Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Reverse (-)

3316458 .. 3319736

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1047600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCAGTCGCCGGCGGTCTGCAACTCTCAGCTCCCTCTCATGGCGGCCAAGGCCACGTCTTACTAAGTTCTACGAAGTCAACTATCTTCGCCGGGGCCCCACTCAGCTTCTCATTCTCCACCTCTGGAAAAGAATCGTTTTCTCGGAAAAACCTCGTTGTGTTTGCTCGGAAACTGTCGGGGTTGGAGGAGGCCATGAGAATCAAAAGAGAGCGTGAGAGTCGGCAGCTTGCGCCAAAGGTCGGAAGAAGGCCGCCATTGAGGCGTGGAAGGGTATCACCGCAACTTCCTGTACCCGATCACATTCCAAGGCCTCCTTATGTTGGGTCATCTTTGTTGCCAGAAATTGCCTGTGAACGTCAATTTCCTGGTTCTGAGGGCATTGATGATATGCGAGCTGCGTGCGAGCTTGCTGCTCGCGTCTTAGAGTCTGCGGGAAAGTTGGTTAAGCCGTCAATAACAACTAATGAAATTGACAAAGCAGTGCACCAGATGATTATTGATGCTGGTGCCTATCCCTCACCACTTGGCTATGGAGGATTTCCAAAGAGTGTATGCACATCAGTTAATGAGTGCATGTGCCATGGAATTCCTGATTCTCGACAGTTACAGAGTGGAGACATTATCAACATAGATGTGACGGTCTACCTAAATGGATATCATGGAGACACATCAAAGACCTTTCTTTGTGGGGATGTCAGTGAACGAATCCAACGACTAGTGAAGGTAACCGAAGAGTGCTTGGAAAAAGGCATAGCAGTTTGTAAGGACGGTGCTAGCTTCAAGAAAATTGGAAAGAGAATTAGTGAGCATGCTGAAAAATATGGTTATGGCGTTGTGGAGCGCTTTGTTGGGCATGGTGTAGGGACTGTATTTCATTCCGAACCATTGATATTACATCACCGTAACGACCAGTCTGGTTCCATGGTTGAAGGTCAAACATTTACCATTGAACCCATCCTTACAATGGGAAGCATCGAGTGCAAAACATGGCCGGACAATTGGACGACTCTGGCCGCGGACGGTAGCCCGGCTGCTCAGTTTGAACATACCATTCTGATTACTAGAACCGGTGCTGAAATTTTGACAACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

366

Amino Acids

39.52

Weight (kDa)

8.01

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	130 - 355	1.4e-52	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	420, 1019
AciI	CCGC	7 cut(s)	15, 45, 254, 281, 434, 1017, 1019
AcoI	YGGCCR	3 cut(s)	46, 992, 1014
AcsI	RAATTY	2 cut(s)	588, 1080
AfaI	GTAC	1 cut(s)	294
AfeI	AGCGCT	1 cut(s)	845
AfiI	CCNNNNNNNGG	4 cut(s)	41, 242, 323, 967
AflIII	ACRYGT	1 cut(s)	1091
AgeI	ACCGGT	1 cut(s)	1070
AgsI	TTSAA	4 cut(s)	784, 932, 953, 1046
AhlI	ACTAGT	1 cut(s)	718
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	6 cut(s)	32, 108, 229, 398, 409, 780
AluI	AGCT	6 cut(s)	32, 108, 229, 398, 409, 780
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	612, 660
Alw44I	GTGCAC	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	845
AoxI	GGCC	8 cut(s)	46, 52, 96, 192, 251, 311, 992, 1014
ApaI	GGGCCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	4 cut(s)	226, 398, 413, 1034
ApoI	RAATTY	2 cut(s)	588, 1080
AsiGI	ACCGGT	1 cut(s)	1070
AspLEI	GCGC	2 cut(s)	235, 846
AspS9I	GGNCC	2 cut(s)	96, 97
AsuC2I	CCSGG	2 cut(s)	94, 1031
AsuHPI	GGTGA	3 cut(s)	270, 513, 893
AsuNHI	GCTAGC	1 cut(s)	776
BaeGI	GKGCMC	2 cut(s)	100, 489
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	238, 385, 400, 1021
BccI	CCATC	1 cut(s)	965
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	4 cut(s)	384, 395, 418, 429
BciT130I	CCWGG	1 cut(s)	369
BcnI	CCSGG	2 cut(s)	94, 1031
BcoDI	GTCTC	2 cut(s)	612, 660
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	3 cut(s)	719, 777, 1065
BfoI	RGCGCY	1 cut(s)	847
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	7 cut(s)	46, 227, 254, 399, 414, 1017, 1035
BlsI	GCNGC	7 cut(s)	47, 228, 255, 400, 415, 1018, 1036
Bme1390I	CCNGG	3 cut(s)	94, 369, 1031
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	96, 97
BmiI	GGNNCC	5 cut(s)	97, 98, 99, 511, 922
BmrFI	CCNGG	3 cut(s)	94, 369, 1031
BmsI	GCATC	2 cut(s)	493, 984
BmtI	GCTAGC	1 cut(s)	780
BpuMI	CCSGG	2 cut(s)	94, 1031
BsaJI	CCNNGG	6 cut(s)	49, 93, 308, 583, 924, 1017
BsaWI	WCCGGW	1 cut(s)	1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 242, 323, 967
Bse118I	RCCGGY	2 cut(s)	11, 1070
Bse1I	ACTGG	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	6 cut(s)	49, 93, 308, 583, 924, 1017
BseGI	GGATG	2 cut(s)	700, 957
BseLI	CCNNNNNNNGG	4 cut(s)	41, 242, 323, 967
BseMII	CTCAG	4 cut(s)	42, 118, 366, 1052
BseNI	ACTGG	1 cut(s)	913
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	2 cut(s)	100, 489
BseXI	GCAGC	4 cut(s)	238, 385, 400, 1021
Bsh1236I	CGCG	2 cut(s)	420, 1019
BshFI	GGCC	8 cut(s)	48, 54, 98, 194, 253, 313, 994, 1016
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	1070
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	5 cut(s)	12, 93, 995, 1031, 1071
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	4 cut(s)	41, 242, 323, 967
BsmAI	GTCTC	2 cut(s)	612, 660
BsmFI	GGGAC	1 cut(s)	880
BsnI	GGCC	8 cut(s)	48, 54, 98, 194, 253, 313, 994, 1016
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	100, 489
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	2 cut(s)	583, 924
BspACI	CCGC	7 cut(s)	15, 45, 254, 281, 434, 1017, 1019
BspANI	GGCC	8 cut(s)	48, 54, 98, 194, 253, 313, 994, 1016
BspCNI	CTCAG	4 cut(s)	41, 117, 367, 1051
BspFNI	CGCG	2 cut(s)	420, 1019
BspLI	GGNNCC	5 cut(s)	97, 98, 99, 511, 922
BspOI	GCTAGC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	11, 1070
BsrI	ACTGG	1 cut(s)	913
BssAI	RCCGGY	2 cut(s)	11, 1070
BssECI	CCNNGG	6 cut(s)	49, 93, 308, 583, 924, 1017
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	4 cut(s)	49, 308, 583, 924
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	7 cut(s)	177, 606, 643, 773, 871, 905, 1025
Bst6I	CTCTTC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	981
BstC8I	GCNNGC	9 cut(s)	13, 231, 396, 403, 407, 411, 418, 778, 813
BstDEI	CTNAG	6 cut(s)	28, 65, 104, 375, 424, 1038
BstDSI	CCRYGG	3 cut(s)	583, 924, 1017
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	2 cut(s)	700, 957
BstFNI	CGCG	2 cut(s)	420, 1019
BstH2I	RGCGCY	1 cut(s)	847
BstHHI	GCGC	2 cut(s)	235, 846
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	612, 660
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 232, 262, 981
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	3 cut(s)	580, 815, 1095
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	92, 367, 1029
BstSLI	GKGCMC	2 cut(s)	100, 489
BstUI	CGCG	2 cut(s)	420, 1019
BstV1I	GCAGC	4 cut(s)	238, 385, 400, 1021
BsuRI	GGCC	8 cut(s)	48, 54, 98, 194, 253, 313, 994, 1016
BtgI	CCRYGG	3 cut(s)	583, 924, 1017
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	700, 957
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	489, 706
Cac8I	GCNNGC	9 cut(s)	13, 231, 396, 403, 407, 411, 418, 778, 813
CfoI	GCGC	2 cut(s)	235, 846
Cfr10I	RCCGGY	2 cut(s)	11, 1070
Cfr13I	GGNCC	2 cut(s)	96, 97
Cfr42I	CCGCGG	1 cut(s)	1020
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	293
CspAI	ACCGGT	1 cut(s)	1070
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	6 cut(s)	28, 65, 104, 375, 424, 1038
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	3 cut(s)	46, 992, 1014
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	4 cut(s)	49, 308, 583, 924
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	659
Eco47III	AGCGCT	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	727
EcoO109I	RGGNCCY	2 cut(s)	96, 97
EcoO65I	GGTNACC	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	659
EcoT14I	CCWWGG	4 cut(s)	49, 308, 583, 924
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	4 cut(s)	49, 308, 583, 924
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	1 cut(s)	880
FauI	CCCGC	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	7 cut(s)	46, 227, 254, 399, 414, 1017, 1035
FokI	GGATG	2 cut(s)	707, 944
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	7 cut(s)	46, 227, 254, 399, 414, 1017, 1035
FspBI	CTAG	3 cut(s)	719, 777, 1065
GlaI	GCGC	2 cut(s)	234, 845
GluI	GCNGC	7 cut(s)	46, 227, 254, 399, 414, 1017, 1035
HaeII	RGCGCY	1 cut(s)	847
HaeIII	GGCC	8 cut(s)	48, 54, 98, 194, 253, 313, 994, 1016
HapII	CCGG	5 cut(s)	12, 93, 995, 1031, 1071
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	235, 846
Hin6I	GCGC	2 cut(s)	233, 844
HinP1I	GCGC	2 cut(s)	233, 844
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	7 cut(s)	134, 201, 220, 428, 596, 708, 1009
HpaII	CCGG	5 cut(s)	12, 93, 995, 1031, 1071
HphI	GGTGA	3 cut(s)	270, 513, 893
Hpy166II	GTNNAC	5 cut(s)	81, 356, 487, 646, 704
Hpy188I	TCNGA	6 cut(s)	147, 171, 245, 376, 883, 1059
Hpy188III	TCNNGA	4 cut(s)	126, 593, 600, 784
Hpy8I	GTNNAC	5 cut(s)	81, 356, 487, 646, 704
HpyAV	CCTTC	4 cut(s)	243, 264, 718, 926
HpyCH4III	ACNGT	7 cut(s)	177, 606, 643, 773, 871, 905, 1025
HpyCH4IV	ACGT	2 cut(s)	57, 358
HpyCH4V	TGCA	5 cut(s)	22, 487, 558, 576, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 232, 262, 981
HpyF3I	CTNAG	6 cut(s)	28, 65, 104, 375, 424, 1038
HpySE526I	ACGT	2 cut(s)	57, 358
HspAI	GCGC	2 cut(s)	233, 844
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	1020
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	37, 841
Lsp1109I	GCAGC	4 cut(s)	238, 385, 400, 1021
LweI	GCATC	2 cut(s)	493, 984
MaeI	CTAG	3 cut(s)	719, 777, 1065
MaeII	ACGT	2 cut(s)	57, 358
MaeIII	GTNAC	4 cut(s)	606, 637, 727, 905
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	79, 258, 746
MfeI	CAATTG	1 cut(s)	1000
MhlI	GDGCHC	2 cut(s)	100, 489
MluCI	AATT	8 cut(s)	345, 362, 471, 588, 789, 801, 1000, 1080
MlyI	GAGTC	3 cut(s)	229, 437, 1003
MmeI	TCCRAC	3 cut(s)	165, 223, 736
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	3 cut(s)	447, 567, 1096
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	5 cut(s)	12, 93, 995, 1031, 1071
MspR9I	CCNGG	3 cut(s)	94, 369, 1031
MunI	CAATTG	1 cut(s)	1000
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	2 cut(s)	420, 1019
MwoI	GCNNNNNNNGC	4 cut(s)	51, 232, 262, 981
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	94, 1031
NcoI	CCATGG	2 cut(s)	583, 924
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	1 cut(s)	11
NheI	GCTAGC	1 cut(s)	776
NlaIV	GGNNCC	5 cut(s)	97, 98, 99, 511, 922
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	3 cut(s)	580, 815, 1095
PaeI	GCATGC	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	313
PciI	ACATGT	1 cut(s)	1091
PcsI	WCGNNNNNNNCGW	1 cut(s)	712
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	4 cut(s)	134, 201, 596, 708
PinAI	ACCGGT	1 cut(s)	1070
PkrI	GCNGC	7 cut(s)	47, 228, 255, 400, 415, 1018, 1036
PleI	GAGTC	3 cut(s)	228, 436, 1003
PpsI	GAGTC	3 cut(s)	228, 436, 1003
PscI	ACATGT	1 cut(s)	1091
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	5 cut(s)	97, 98, 99, 511, 922
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	96, 97
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	635
SacII	CCGCGG	1 cut(s)	1020
SaqAI	TTAA	3 cut(s)	447, 567, 1096
SatI	GCNGC	7 cut(s)	46, 227, 254, 399, 414, 1017, 1035
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	96, 97
SchI	GAGTC	3 cut(s)	229, 437, 1003
ScrFI	CCNGG	3 cut(s)	94, 369, 1031
SduI	GDGCHC	2 cut(s)	100, 489
SfaNI	GCATC	2 cut(s)	493, 984
Sfr303I	CCGCGG	1 cut(s)	1020
SgrAI	CRCCGGYG	1 cut(s)	11
SgrBI	CCGCGG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	718
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	8 cut(s)	345, 362, 471, 588, 789, 801, 1000, 1080
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	7 cut(s)	15, 45, 254, 281, 434, 1017, 1019
SspMI	CTAG	3 cut(s)	719, 777, 1065
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	92, 367, 1029
StyI	CCWWGG	4 cut(s)	49, 308, 583, 924
TaaI	ACNGT	7 cut(s)	177, 606, 643, 773, 871, 905, 1025
TaiI	ACGT	2 cut(s)	60, 361
TaqI	TCGA	2 cut(s)	601, 978
TasI	AATT	8 cut(s)	345, 362, 471, 588, 789, 801, 1000, 1080
TauI	GCSGC	3 cut(s)	48, 256, 1019
TfiI	GAWTC	4 cut(s)	134, 201, 596, 708
Tru1I	TTAA	3 cut(s)	447, 567, 1096
Tru9I	TTAA	3 cut(s)	447, 567, 1096
TscAI	CASTG	2 cut(s)	489, 706
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	4 cut(s)	226, 398, 413, 1034
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	2 cut(s)	483, 866
TspRI	CASTG	2 cut(s)	489, 706
VneI	GTGCAC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	588, 1080
XceI	RCATGY	3 cut(s)	580, 815, 1095
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	3 cut(s)	719, 777, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.