pycom13g04040

Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
2677045 .. 2680309
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04040.9

Sequence Viewer

Length: 1227 bp
ATGGTCGAGGCCCAGTATATTTTTCAAACCAACCCAAAACGCCCCTTATTCTGTTGCGTTATCCACTCTCTCTCCCACTTCCCTCTTCCTCTCTGTGCTAGTAGCAAGAGCAAGAGTTACAGAGAGAAAATGGCAGTCGCCGGAGGTCTGCAACTCTCAGCTCCTTCTCATGGCTGCCAAGGCCAAGTCTTACTAAGTTCAACGAAGTCAACTCTCTTCGTCGGGTCCCCACTCAGCTTCTCCCTCTCCACCTATGGAAAAGAATCGTTTTATCGGAAGAACCTCGTTGTGTTTGCTCGGAGACTTTCGGGGTTGGAGGAGGCCATGAGAATTAAAAGAGAGCGTGAGACTCGGCAGCTTGCGCCAAAGATTGGAAGAAGGCCGCCATTGAGGCGTGGAAGGGTGTCGCCACAACTTCCCGTTCCTGATCACATTCCGAGGCCTCCTTATGTTGGCTCATCTATATTGCCAGAAATTGCCAATGAACATCAATTTCCTAGTTCTGAAGGCATTGCTGATATGCGAGCTGCGTGCGAGCTTGCTGCTCGCGTCTTAGAATCTGCAGGAAAGTTGGTTAGGCCGTCAGTAACAACTAATGAAATTGACATAGCAGTGCACCAGATGATTATTGATGCTGGTGCCTATCCCTCACCACTTGGCTATGGAGGATTTCCGAAGAGTGTATGCACATCTGTTAACGAGTGCATGTGCCACGGAATTCCTGATTCTCGACAGTTACAGAGTGGAGACATTATCAACATAGATGTGACGGTCTACCTAAATGGATATCATGGAGACACATCAAAGACCTTTCTTTGTGGGGATGTCACTGAATCAATCCAACGACTAGTGAAGGTAACCGAAGAGTGCTTGGAAAAAGGCATAGCGGTTTGCAAGGATGGTGCTAGCTTCAAGAAAATTGGAAAAAGAATTAGTGAACATGCTGAAAAATACGGTTATGGCGTAGTAGAGCGCTTTGTTGGGCACGGTGTAGGGACTGTATTTCATTCTGAACCATTAATACTACATCACCGTAATGACCAGTCTGGTTCCATGGTTGAAGGTCAAACATTTACCATTGAACCCATCCTTACAATGGGAAGCATCGAGTGTAAAACGTGGCCGGACAATTGGACGACGCTGACCGCGGATGGTAGCCCGGCTGCGCAGTTTGAACATACCATTCTGATTACGAGAACCGGCGCTGAAATTTTGACAACATGTTAA

Protein Analysis

409

Amino Acids

44.69

Weight (kDa)

8.36

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1167
AccB1I GGYRCC 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 774
AccII CGCG 2 cut(s) 549, 1148
AciI CCGC 4 cut(s) 383, 887, 1146, 1148
AcoI YGGCCR 1 cut(s) 1121
AcsI RAATTY 2 cut(s) 717, 1209
AcuI CTGAAG 1 cut(s) 525
AfeI AGCGCT 1 cut(s) 974
AfiI CCNNNNNNNGG 4 cut(s) 170, 371, 452, 1096
AflIII ACRYGT 1 cut(s) 1220
AgsI TTSAA 6 cut(s) 26, 201, 913, 1061, 1082, 1175
AhlI ACTAGT 1 cut(s) 847
AluBI AGCT 6 cut(s) 161, 237, 358, 527, 538, 909
AluI AGCT 6 cut(s) 161, 237, 358, 527, 538, 909
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 4 cut(s) 295, 341, 741, 789
Alw44I GTGCAC 1 cut(s) 614
Aor51HI AGCGCT 1 cut(s) 974
AoxI GGCC 7 cut(s) 9, 181, 321, 380, 440, 578, 1121
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 5 cut(s) 174, 355, 527, 542, 1163
ApoI RAATTY 2 cut(s) 717, 1209
AseI ATTAAT 1 cut(s) 1019
AspLEI GCGC 4 cut(s) 364, 975, 1168, 1205
AspS9I GGNCC 2 cut(s) 10, 225
AsuC2I CCSGG 1 cut(s) 1160
AsuHPI GGTGA 2 cut(s) 642, 1022
AsuNHI GCTAGC 1 cut(s) 905
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 2 cut(s) 618, 987
BanI GGYRCC 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 5 cut(s) 161, 367, 514, 529, 1150
BccI CCATC 3 cut(s) 893, 1094, 1145
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 4 cut(s) 513, 524, 547, 558
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 1160
BcoDI GTCTC 4 cut(s) 295, 341, 741, 789
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 4 cut(s) 99, 498, 848, 906
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 2 cut(s) 976, 1206
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 6 cut(s) 175, 356, 383, 528, 543, 1164
BlsI GCNGC 6 cut(s) 176, 357, 384, 529, 544, 1165
Bme1390I CCNGG 1 cut(s) 1160
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 10, 225
BmiI GGNNCC 4 cut(s) 226, 227, 640, 1051
BmrFI CCNGG 1 cut(s) 1160
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 622, 1113
BmtI GCTAGC 1 cut(s) 909
BmuI ACTGGG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 1160
BsaJI CCNNGG 5 cut(s) 178, 437, 712, 1053, 1146
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 371, 452, 1096
Bse118I RCCGGY 1 cut(s) 1199
Bse1I ACTGG 2 cut(s) 13, 1042
Bse3DI GCAATG 1 cut(s) 510
BseDI CCNNGG 5 cut(s) 178, 437, 712, 1053, 1146
BseGI GGATG 4 cut(s) 829, 904, 1086, 1156
BseLI CCNNNNNNNGG 4 cut(s) 170, 371, 452, 1096
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 171, 247
BseNI ACTGG 2 cut(s) 13, 1042
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 2 cut(s) 618, 987
BseXI GCAGC 5 cut(s) 161, 367, 514, 529, 1150
Bsh1236I CGCG 2 cut(s) 549, 1148
BshFI GGCC 7 cut(s) 11, 183, 323, 382, 442, 580, 1123
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 618
BsiSI CCGG 4 cut(s) 141, 1124, 1160, 1200
BslFI GGGAC 2 cut(s) 211, 1009
BslI CCNNNNNNNGG 4 cut(s) 170, 371, 452, 1096
BsmAI GTCTC 4 cut(s) 295, 341, 741, 789
BsmFI GGGAC 2 cut(s) 211, 1009
BsnI GGCC 7 cut(s) 11, 183, 323, 382, 442, 580, 1123
Bsp1286I GDGCHC 2 cut(s) 618, 987
Bsp143I GATC 1 cut(s) 427
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 4 cut(s) 383, 887, 1146, 1148
BspANI GGCC 7 cut(s) 11, 183, 323, 382, 442, 580, 1123
BspCNI CTCAG 2 cut(s) 170, 246
BspFNI CGCG 2 cut(s) 549, 1148
BspLI GGNNCC 4 cut(s) 226, 227, 640, 1051
BspMAI CTGCAG 1 cut(s) 565
BspOI GCTAGC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 1199
BsrI ACTGG 2 cut(s) 13, 1042
BssAI RCCGGY 1 cut(s) 1199
BssECI CCNNGG 5 cut(s) 178, 437, 712, 1053, 1146
BssMI GATC 1 cut(s) 427
BssT1I CCWWGG 2 cut(s) 178, 1053
Bst4CI ACNGT 6 cut(s) 735, 772, 956, 989, 1000, 1034
Bst6I CTCTTC 4 cut(s) 90, 221, 671, 858
BstC8I GCNNGC 7 cut(s) 360, 525, 532, 536, 540, 547, 907
BstDEI CTNAG 4 cut(s) 157, 194, 233, 553
BstDSI CCRYGG 3 cut(s) 712, 1053, 1146
BstEII GGTNACC 1 cut(s) 856
BstF5I GGATG 4 cut(s) 829, 904, 1086, 1156
BstFNI CGCG 2 cut(s) 549, 1148
BstH2I RGCGCY 2 cut(s) 976, 1206
BstHHI GCGC 4 cut(s) 364, 975, 1168, 1205
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 4 cut(s) 295, 341, 741, 789
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 3 cut(s) 180, 361, 391
BstNSI RCATGY 3 cut(s) 709, 944, 1224
BstPI GGTNACC 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 1158
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 2 cut(s) 618, 987
BstUI CGCG 2 cut(s) 549, 1148
BstV1I GCAGC 5 cut(s) 161, 367, 514, 529, 1150
BsuRI GGCC 7 cut(s) 11, 183, 323, 382, 442, 580, 1123
BtgI CCRYGG 3 cut(s) 712, 1053, 1146
BtsCI GGATG 4 cut(s) 829, 904, 1086, 1156
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 618, 828
Cac8I GCNNGC 7 cut(s) 360, 525, 532, 536, 540, 547, 907
CfoI GCGC 4 cut(s) 364, 975, 1168, 1205
Cfr10I RCCGGY 1 cut(s) 1199
Cfr13I GGNCC 2 cut(s) 10, 225
Cfr42I CCGCGG 1 cut(s) 1149
CseI GACGC 2 cut(s) 538, 1147
CviAII CATG 7 cut(s) 170, 325, 706, 791, 941, 1054, 1221
DdeI CTNAG 4 cut(s) 157, 194, 233, 553
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 1121
Eam1104I CTCTTC 4 cut(s) 90, 221, 671, 858
EarI CTCTTC 4 cut(s) 90, 221, 671, 858
Eco130I CCWWGG 2 cut(s) 178, 1053
Eco147I AGGCCT 1 cut(s) 442
Eco32I GATATC 1 cut(s) 788
Eco47I GGWCC 1 cut(s) 225
Eco47III AGCGCT 1 cut(s) 974
Eco57I CTGAAG 1 cut(s) 525
Eco91I GGTNACC 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 717
EcoRV GATATC 1 cut(s) 788
EcoT14I CCWWGG 2 cut(s) 178, 1053
ErhI CCWWGG 2 cut(s) 178, 1053
FaeI CATG 7 cut(s) 173, 328, 709, 794, 944, 1057, 1224
FaqI GGGAC 2 cut(s) 211, 1009
FatI CATG 7 cut(s) 169, 324, 705, 790, 940, 1053, 1220
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 6 cut(s) 175, 356, 383, 528, 543, 1164
FokI GGATG 4 cut(s) 836, 911, 1073, 1163
Fsp4HI GCNGC 6 cut(s) 175, 356, 383, 528, 543, 1164
FspBI CTAG 4 cut(s) 99, 498, 848, 906
FspI TGCGCA 1 cut(s) 1167
GlaI GCGC 4 cut(s) 363, 974, 1167, 1204
GluI GCNGC 6 cut(s) 175, 356, 383, 528, 543, 1164
HaeII RGCGCY 2 cut(s) 976, 1206
HaeIII GGCC 7 cut(s) 11, 183, 323, 382, 442, 580, 1123
HapII CCGG 4 cut(s) 141, 1124, 1160, 1200
HgaI GACGC 2 cut(s) 538, 1147
HhaI GCGC 4 cut(s) 364, 975, 1168, 1205
Hin1II CATG 7 cut(s) 173, 328, 709, 794, 944, 1057, 1224
Hin6I GCGC 4 cut(s) 362, 973, 1166, 1203
HinP1I GCGC 4 cut(s) 362, 973, 1166, 1203
HincII GTYRAC 2 cut(s) 210, 697
HindII GTYRAC 2 cut(s) 210, 697
HinfI GANTC 5 cut(s) 263, 349, 557, 725, 833
HpaI GTTAAC 1 cut(s) 697
HpaII CCGG 4 cut(s) 141, 1124, 1160, 1200
HphI GGTGA 2 cut(s) 642, 1022
Hpy166II GTNNAC 5 cut(s) 210, 616, 697, 775, 938
Hpy188I TCNGA 7 cut(s) 276, 300, 438, 505, 675, 1012, 1188
Hpy188III TCNNGA 4 cut(s) 425, 722, 729, 913
Hpy8I GTNNAC 5 cut(s) 210, 616, 697, 775, 938
Hpy99I CGWCG 2 cut(s) 224, 1141
HpyAV CCTTC 6 cut(s) 174, 372, 393, 500, 847, 1055
HpyCH4III ACNGT 6 cut(s) 735, 772, 956, 989, 1000, 1034
HpyCH4IV ACGT 1 cut(s) 1118
HpyCH4V TGCA 6 cut(s) 151, 563, 616, 687, 705, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 361, 391
HpyF3I CTNAG 4 cut(s) 157, 194, 233, 553
HpySE526I ACGT 1 cut(s) 1118
Hsp92II CATG 7 cut(s) 173, 328, 709, 794, 944, 1057, 1224
HspAI GCGC 4 cut(s) 362, 973, 1166, 1203
KflI GGGWCCC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 427
KspAI GTTAAC 1 cut(s) 697
KspI CCGCGG 1 cut(s) 1149
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 5 cut(s) 161, 367, 514, 529, 1150
LweI GCATC 2 cut(s) 622, 1113
MaeI CTAG 4 cut(s) 99, 498, 848, 906
MaeII ACGT 1 cut(s) 1118
MaeIII GTNAC 6 cut(s) 116, 586, 735, 766, 826, 856
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 6 cut(s) 77, 208, 289, 387, 688, 875
MfeI CAATTG 1 cut(s) 1129
MhlI GDGCHC 2 cut(s) 618, 987
MluCI AATT 9 cut(s) 330, 474, 491, 600, 717, 918, 930, 1129, 1209
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 294, 865
MseI TTAA 4 cut(s) 333, 696, 1019, 1225
MslI CAYNNNNRTG 3 cut(s) 611, 764, 1035
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 4 cut(s) 141, 1124, 1160, 1200
MspR9I CCNGG 1 cut(s) 1160
MunI CAATTG 1 cut(s) 1129
MvnI CGCG 2 cut(s) 549, 1148
MwoI GCNNNNNNNGC 3 cut(s) 180, 361, 391
NciI CCSGG 1 cut(s) 1160
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 1 cut(s) 427
NheI GCTAGC 1 cut(s) 905
NlaIII CATG 7 cut(s) 173, 328, 709, 794, 944, 1057, 1224
NlaIV GGNNCC 4 cut(s) 226, 227, 640, 1051
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 766, 826
NsbI TGCGCA 1 cut(s) 1167
NspI RCATGY 3 cut(s) 709, 944, 1224
PceI AGGCCT 1 cut(s) 442
PciI ACATGT 1 cut(s) 1220
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PfeI GAWTC 4 cut(s) 263, 557, 725, 833
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 6 cut(s) 176, 357, 384, 529, 544, 1165
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 225
PscI ACATGT 1 cut(s) 1220
PshBI ATTAAT 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 226, 227, 640, 1051
PspPI GGNCC 2 cut(s) 10, 225
PspPPI RGGWCCY 1 cut(s) 225
PsrI GAACNNNNNNTAC 2 cut(s) 1005, 1037
PstI CTGCAG 1 cut(s) 565
RseI CAYNNNNRTG 3 cut(s) 611, 764, 1035
SacII CCGCGG 1 cut(s) 1149
SaqAI TTAA 4 cut(s) 333, 696, 1019, 1225
SatI GCNGC 6 cut(s) 175, 356, 383, 528, 543, 1164
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 2 cut(s) 10, 225
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 1160
SduI GDGCHC 2 cut(s) 618, 987
SfaNI GCATC 2 cut(s) 622, 1113
SfcI CTRYAG 1 cut(s) 561
Sfr303I CCGCGG 1 cut(s) 1149
SgrBI CCGCGG 1 cut(s) 1149
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 3 cut(s) 611, 764, 1035
SpeI ACTAGT 1 cut(s) 847
Sse9I AATT 9 cut(s) 330, 474, 491, 600, 717, 918, 930, 1129, 1209
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 4 cut(s) 383, 887, 1146, 1148
SspMI CTAG 4 cut(s) 99, 498, 848, 906
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 1158
StyI CCWWGG 2 cut(s) 178, 1053
TaaI ACNGT 6 cut(s) 735, 772, 956, 989, 1000, 1034
TaiI ACGT 1 cut(s) 1121
TaqI TCGA 3 cut(s) 6, 730, 1107
TasI AATT 9 cut(s) 330, 474, 491, 600, 717, 918, 930, 1129, 1209
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 4 cut(s) 263, 557, 725, 833
Tru1I TTAA 4 cut(s) 333, 696, 1019, 1225
Tru9I TTAA 4 cut(s) 333, 696, 1019, 1225
TscAI CASTG 2 cut(s) 618, 835
TseFI GTSAC 2 cut(s) 766, 826
TseI GCWGC 5 cut(s) 174, 355, 527, 542, 1163
Tsp45I GTSAC 2 cut(s) 766, 826
TspDTI ATGAA 3 cut(s) 498, 612, 995
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 618, 835
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 1019
XapI RAATTY 2 cut(s) 717, 1209
XceI RCATGY 3 cut(s) 709, 944, 1224
XcmI CCANNNNNNNNNTGG 1 cut(s) 1093
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 4 cut(s) 99, 498, 848, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.