Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010003

Physical Location & Seq

Genomic Coordinates Reverse (-)

4730395 .. 4733869

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGCGGGTTTTTCCGATTCCATTACTCTCACATGTGAGAGGATTGATTCGACAAGGACCCTCTTCGCGATTCTACGTGGTTCCTGCACTTGCCCGGACAAACCTTACAATCTCACACTCTGAGCAAGTAAAAGAAGGTACTTTTGATTATAAAGCATTGGAGTTAAATGACATTGGGGTTCTTCGTGTGTTGAATAGTATGAAAGATGATCCTTATCTTGCTTTATCGTTTCTCAAACGAATTGAAGGAAATGTGACTTTGCCTAGTGTCCAAGCTTATGCAACTGTTATCAGAATCGTTTGTGGTTGGGGTTTGGATAAGAAATTGGATACTTTTCTATTTGAACTCGTTAGAAGAGGAGATGAGGGACGCGGTTTCAGTGTAATGGATTTGTTAAAGGCCATTGGAGAAATGGAACAGTCATTGGTGTTGTTGATTCGAGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTGATATGTTTGACGAAGCTATTGATATTTTCTTCCGAGCTTACTATTCTCTAGGACGTGCTCCGGATATAAAGGCATTGAATTTTTTGATCAGCCGTATGATTGCATCTGGGAGAAGTGATATGGTGGTTGGTTTTTTCTGGGAAATAGAGCGTCTCGGGTTGGATGCAGATGCACATACTTATGTTCTTGTGGTTCAAGCATTGTGGAGGAATGATGATAAGGAAGAATTAGAGAAGCTTCTTAGTAGACTGTTAATCTCAGAGACTAGGAACCCTTGCGTATTTTATTTGAATTTTATTGAAGGACTGTGTTTGAATCAGATGACAGATATAGCTTATTTTCTACTCCAACCATTGAGGGATGCAAATATTCTGGTGGATAAGAGTGATCTTGGAATTGCATATCGCAAAGTGGTGCGTGGTTTATGTTATGAGATGAGAATAGAAGACGCTGAAAGTGTTGTTCTTGACATGGAGAAACATGGGATTGATCCGGATGTCTATGTTTACTCGGCGATAATTGAGGGACATCGCAAGAATATGAATATACCTAAAGCTGTGGATGTTTTTAACAAAATGTTGAAGAAAAGAAAAAGAATAAACTGTGTGATTGTAAGCTCAATCCTTCAATGCTATTGTCAGATGGGAAATTTCTCGGAAGCTTATGATCTATTTAAAGAGTTTAGAGAGACGAACATTTCTCTTGATAGAGTTTGCTACAATGTTGCATTTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGTTGTTCAGAGAAATGACGGGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACTTTGATAGGGGGTTGCTGTCTACAAGGTAAATGTTCTGATGCCTTTGATTTGATGATTGAAATGGACGGAACAGGTAAAACACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTACGAATGGTCTTGCACAAGAGGCATTCGAAACTCTGAAAATGATGGAAAATCGGGGTGTAAAACCCACTTATGTTACACACAACATGGTCATTGAAGGCCTGATTGATGCAGGTGAACTAGACAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAATCTCGGGAAAACGATGCAAGTATGGTGAAGGGTTTTTGTGCCGCTGGCTGTCTTGATCATGCCTTTGAACGATTCATTAGACTGGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCGCCGAGAAAGATTATATCAGCAAAGCTCAAGACTTACTGGATAGAATGTGGAAACTTGGAGTCGAACCTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCTTGGTGTCGAGTTAATAATGTGAGAAAAGCCCGGGAGTTTTTTGAAATTTTAGTTACTAAAAAGATTGTCCCTGATTTGTTCACTTATACAATCATGATTAACACCTATTGCCGGTTAAACGAGCCGAAGCAAGCCTATGCTCTTTTTGAAGACATGAAGAGGAGAGATGTCAAACCTGATGTGGTAACATACTCAGTTTTACTCAATAGCGATCCAGAGTTGGATATGAAGAGGGAAATGGAAGCCTTTGATGTTATTCCAGACGTCGTCTACTACACAATCATGATTAACAGATATTGCCATTTAAACGACCTGAAGAAAGTCTATGCTCTTTTTAAAGACATGAAGAGGAGAGAAATCGTACCTGATGTGGTAACATACACAGTTTTACTCAAAAACAAACCAGAACGGAATCTTTCAAGGGAAATGAAAGCCTTTGATGTTAAACCAGACGTTTTCTACTACACGGTTTTGATTGATTGGCAGTGCAAGATTGGGGATCTTGGAGAGGCGAAAAGAATTTTTGATCAAATGATCGAGAGTGGGGTGGATCCTGATGCTGCGCCTTACACAGCACTAATAGCTTGTTGCTGTAAGATGGGATATCTTAAAGAGGCAAAAATGATCTTTGATCGAATGATTGAAAGTGGGGTAAAGCCTGATGTTGTGCCTTACACAGCGTTAATAGCTGGTTGTTGTAGGAATGGATTTGTACTTAAGGCAGTCAAACTTGTGAAAGAGATGTTGGAAAAGGGGATTAAGCCGACTAAAGCTTCTCTGTCTGCAGTACACTATGCTAAATTAAAGGCCAAGGGACTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

883

Amino Acids

100.52

Weight (kDa)

6.62

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	293 - 336	3.5e-06	PPR repeat family
PPR_2	PF13041	362 - 408	3e-07	PPR repeat family
PPR_2	PF13041	396 - 442	7.6e-13	PPR repeat family
PPR	PF01535	397 - 427	5.3e-07	PPR repeat
PPR_3	PF13812	418 - 472	1.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	425 - 457	3.8e-08	PPR repeat
PPR_2	PF13041	429 - 465	1e-05	PPR repeat family
PPR_3	PF13812	454 - 509	3.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	464 - 511	2.9e-09	PPR repeat family
PPR_2	PF13041	603 - 647	7.7e-10	PPR repeat family
PPR_1	PF12854	631 - 662	4.2e-09	PPR repeat
PPR	PF01535	636 - 666	1.4e-06	PPR repeat
PPR_2	PF13041	640 - 678	7.4e-13	PPR repeat family
PPR_3	PF13812	685 - 741	9.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	696 - 741	5.7e-15	PPR repeat family
PPR_3	PF13812	748 - 808	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	756 - 787	2.2e-06	PPR repeat
PPR_2	PF13041	759 - 808	4e-12	PPR repeat family
PPR_long	PF17177	777 - 872	3.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	791 - 822	4.7e-06	PPR repeat
PPR	PF01535	799 - 827	1.1e-07	PPR repeat
PPR_2	PF13041	799 - 843	5.4e-12	PPR repeat family
PPR_3	PF13812	818 - 866	2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	826 - 857	9.9e-10	PPR repeat
PPR_2	PF13041	829 - 869	4.2e-09	PPR repeat family
PPR	PF01535	833 - 862	4.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca	FvH4_3g13690
malus_domestica	MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica	Prupe.4G124300_v2.0.a1
pyrus_communis	pycom10g18530 pycom10g18570
rosa_chinensis	RchiOBHm_Chr5g0022931
rosa_laevigata	RLG00000032683
rosa_multiflora	Rmu_sc0000401.1_g000029
rosa_roxburghii	Rroxscaffold_1G00056410
rosa_rugosa	Rorug05G0075600 Rorug05G0075700
rosa_samantha	Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana	Rw5G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AarI	CACCTGC	1 cut(s)	1532
AatII	GACGTC	1 cut(s)	2094
Acc36I	ACCTGC	1 cut(s)	1532
AccI	GTMKAC	3 cut(s)	724, 1327, 2097
AccII	CGCG	2 cut(s)	67, 372
AccIII	TCCGGA	2 cut(s)	538, 970
AciI	CCGC	3 cut(s)	4, 372, 1632
AclWI	GGATC	6 cut(s)	203, 962, 2033, 2334, 2372, 2385
AcsI	RAATTY	6 cut(s)	556, 769, 1126, 1676, 1872, 2346
AcuI	CTGAAG	2 cut(s)	1581, 2162
AcyI	GRCGYC	1 cut(s)	2091
AfaI	GTAC	5 cut(s)	139, 1413, 2190, 2541, 2616
AfiI	CCNNNNNNNGG	1 cut(s)	1938
AflII	CTTAAG	1 cut(s)	2543
AflIII	ACRYGT	1 cut(s)	31
AhlI	ACTAGT	1 cut(s)	1715
AjiI	CACGTC	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	2555, 2587
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	4 cut(s)	448, 635, 734, 1160
AlwI	GGATC	6 cut(s)	203, 962, 2033, 2334, 2372, 2385
Ama87I	CYCGRG	3 cut(s)	632, 1593, 1857
Aor13HI	TCCGGA	2 cut(s)	538, 970
AoxI	GGCC	3 cut(s)	399, 1528, 2634
ApeKI	GCWGC	1 cut(s)	2387
ApoI	RAATTY	6 cut(s)	556, 769, 1126, 1676, 1872, 2346
AspLEI	GCGC	2 cut(s)	1727, 2392
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	3 cut(s)	94, 1858, 1859
AsuHPI	GGTGA	2 cut(s)	1556, 1627
AsuII	TTCGAA	1 cut(s)	1458
AvaI	CYCGRG	3 cut(s)	632, 1593, 1857
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	2377
BbsI	GAAGAC	2 cut(s)	930, 1983
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	2374
BccI	CCATC	3 cut(s)	1114, 1468, 2419
BceAI	ACGGC	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	3 cut(s)	564, 1645, 2353
BcnI	CCSGG	3 cut(s)	94, 1858, 1859
BcoDI	GTCTC	4 cut(s)	448, 635, 734, 1160
BcuI	ACTAGT	1 cut(s)	1715
BfaI	CTAG	5 cut(s)	264, 527, 744, 1550, 1716
BfmI	CTRYAG	1 cut(s)	2610
BfrI	CTTAAG	1 cut(s)	2543
BfuAI	ACCTGC	1 cut(s)	1532
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	1632, 2388
BlsI	GCNGC	2 cut(s)	1633, 2389
Bme1390I	CCNGG	3 cut(s)	94, 1858, 1859
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	3 cut(s)	632, 1593, 1857
BmgBI	CACGTC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	4 cut(s)	58, 81, 749, 2379
BmrFI	CCNGG	3 cut(s)	94, 1858, 1859
BmsI	GCATC	9 cut(s)	590, 631, 637, 829, 1201, 1336, 1528, 1594, 2374
BpiI	GAAGAC	2 cut(s)	930, 1983
Bpu14I	TTCGAA	1 cut(s)	1458
BpuEI	CTTGAG	1 cut(s)	1737
BpuMI	CCSGG	3 cut(s)	94, 1858, 1859
BsaAI	YACGTR	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	2091
BsaJI	CCNNGG	2 cut(s)	1857, 2637
BsaWI	WCCGGW	2 cut(s)	538, 970
Bsc4I	CCNNNNNNNGG	1 cut(s)	1938
Bse118I	RCCGGY	1 cut(s)	1938
Bse1I	ACTGG	2 cut(s)	1677, 1767
Bse8I	GATNNNNATC	1 cut(s)	213
BseAI	TCCGGA	2 cut(s)	538, 970
BseDI	CCNNGG	2 cut(s)	1857, 2637
BseGI	GGATG	4 cut(s)	646, 844, 979, 1045
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	1938
BseMII	CTCAG	4 cut(s)	111, 750, 1785, 2034
BseNI	ACTGG	2 cut(s)	1677, 1767
BseRI	GAGGAG	3 cut(s)	372, 2002, 2191
BseXI	GCAGC	1 cut(s)	2374
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	67, 372
BshFI	GGCC	3 cut(s)	401, 1530, 2636
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	3 cut(s)	632, 1593, 1857
BsiSI	CCGG	5 cut(s)	94, 539, 971, 1858, 1939
BslFI	GGGAC	3 cut(s)	381, 1017, 1880
BslI	CCNNNNNNNGG	1 cut(s)	1938
BsmAI	GTCTC	4 cut(s)	448, 635, 734, 1160
BsmBI	CGTCTC	2 cut(s)	635, 1160
BsmFI	GGGAC	3 cut(s)	381, 1017, 1880
BsmI	GAATGC	1 cut(s)	1454
BsnI	GGCC	3 cut(s)	401, 1530, 2636
BsoBI	CYCGRG	3 cut(s)	632, 1593, 1857
Bsp119I	TTCGAA	1 cut(s)	1458
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp13I	TCCGGA	2 cut(s)	538, 970
Bsp68I	TCGCGA	1 cut(s)	67
BspACI	CCGC	3 cut(s)	4, 372, 1632
BspANI	GGCC	3 cut(s)	401, 1530, 2636
BspCNI	CTCAG	4 cut(s)	112, 749, 1786, 2033
BspEI	TCCGGA	2 cut(s)	538, 970
BspFNI	CGCG	2 cut(s)	67, 372
BspHI	TCATGA	2 cut(s)	1920, 2109
BspLI	GGNNCC	4 cut(s)	58, 81, 749, 2379
BspMAI	CTGCAG	1 cut(s)	2614
BspMI	ACCTGC	1 cut(s)	1532
BspPI	GGATC	6 cut(s)	203, 962, 2033, 2334, 2372, 2385
BspQI	GCTCTTC	1 cut(s)	1793
BspT104I	TTCGAA	1 cut(s)	1458
BspTI	CTTAAG	1 cut(s)	2543
BsrFI	RCCGGY	1 cut(s)	1938
BsrI	ACTGG	2 cut(s)	1677, 1767
BssAI	RCCGGY	1 cut(s)	1938
BssECI	CCNNGG	2 cut(s)	1857, 2637
BssNI	GRCGYC	1 cut(s)	2091
BssT1I	CCWWGG	1 cut(s)	2637
Bst4CI	ACNGT	7 cut(s)	286, 420, 729, 786, 1082, 2212, 2296
Bst6I	CTCTTC	6 cut(s)	67, 349, 1793, 1979, 2051, 2168
BstACI	GRCGYC	1 cut(s)	2091
BstAFI	CTTAAG	1 cut(s)	2543
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstBAI	YACGTR	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	1458
BstC8I	GCNNGC	2 cut(s)	1636, 1959
BstDEI	CTNAG	5 cut(s)	120, 719, 736, 1794, 2020
BstF5I	GGATG	4 cut(s)	646, 844, 979, 1045
BstFNI	CGCG	2 cut(s)	67, 372
BstHHI	GCGC	2 cut(s)	1727, 2392
BstMAI	GTCTC	4 cut(s)	448, 635, 734, 1160
BstMWI	GCNNNNNNNGC	4 cut(s)	1211, 1451, 2408, 2513
BstNSI	RCATGY	2 cut(s)	35, 1807
BstSCI	CCNGG	3 cut(s)	92, 1856, 1857
BstSFI	CTRYAG	1 cut(s)	2610
BstUI	CGCG	2 cut(s)	67, 372
BstV1I	GCAGC	1 cut(s)	2374
BstV2I	GAAGAC	2 cut(s)	930, 1983
BstX2I	RGATCY	2 cut(s)	2326, 2377
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	2 cut(s)	2326, 2377
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	401, 1530, 2636
BtgZI	GCGATG	1 cut(s)	992
BtrI	CACGTC	1 cut(s)	533
BtsCI	GGATG	4 cut(s)	646, 844, 979, 1045
BtsI	GCAGTG	2 cut(s)	447, 2318
BtsIMutI	CAGTG	3 cut(s)	385, 447, 2318
BtuMI	TCGCGA	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	1532
Cac8I	GCNNGC	2 cut(s)	1636, 1959
CciI	TCATGA	2 cut(s)	1920, 2109
CfoI	GCGC	2 cut(s)	1727, 2392
Cfr10I	RCCGGY	1 cut(s)	1938
Cfr13I	GGNCC	1 cut(s)	56
Cfr9I	CCCGGG	1 cut(s)	1857
CseI	GACGC	3 cut(s)	378, 617, 935
Csp6I	GTAC	5 cut(s)	138, 1412, 2189, 2540, 2615
CspCI	CAANNNNNGTGG	2 cut(s)	662, 697
CviQI	GTAC	5 cut(s)	138, 1412, 2189, 2540, 2615
DdeI	CTNAG	5 cut(s)	120, 719, 736, 1794, 2020
DraI	TTTAAA	3 cut(s)	1153, 2133, 2164
Eam1104I	CTCTTC	6 cut(s)	67, 349, 1793, 1979, 2051, 2168
EarI	CTCTTC	6 cut(s)	67, 349, 1793, 1979, 2051, 2168
Eco130I	CCWWGG	1 cut(s)	2637
Eco147I	AGGCCT	1 cut(s)	1530
Eco32I	GATATC	1 cut(s)	2432
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	1581, 2162
Eco88I	CYCGRG	3 cut(s)	632, 1593, 1857
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	2432
EcoT14I	CCWWGG	1 cut(s)	2637
ErhI	CCWWGG	1 cut(s)	2637
Esp3I	CGTCTC	2 cut(s)	635, 1160
FaqI	GGGAC	3 cut(s)	381, 1017, 1880
FbaI	TGATCA	3 cut(s)	564, 1645, 2353
FblI	GTMKAC	3 cut(s)	724, 1327, 2097
Fnu4HI	GCNGC	2 cut(s)	1632, 2388
FokI	GGATG	4 cut(s)	653, 851, 986, 1052
Fsp4HI	GCNGC	2 cut(s)	1632, 2388
FspBI	CTAG	5 cut(s)	264, 527, 744, 1550, 1716
GlaI	GCGC	2 cut(s)	1726, 2391
GluI	GCNGC	2 cut(s)	1632, 2388
HaeIII	GGCC	3 cut(s)	401, 1530, 2636
HapII	CCGG	5 cut(s)	94, 539, 971, 1858, 1939
HgaI	GACGC	3 cut(s)	378, 617, 935
HhaI	GCGC	2 cut(s)	1727, 2392
Hin1I	GRCGYC	1 cut(s)	2091
Hin6I	GCGC	2 cut(s)	1725, 2390
HinP1I	GCGC	2 cut(s)	1725, 2390
HindIII	AAGCTT	6 cut(s)	273, 713, 1137, 1223, 1563, 2598
HpaII	CCGG	5 cut(s)	94, 539, 971, 1858, 1939
HphI	GGTGA	2 cut(s)	1556, 1627
Hpy166II	GTNNAC	7 cut(s)	725, 985, 1328, 1547, 1908, 2098, 2617
Hpy8I	GTNNAC	7 cut(s)	725, 985, 1328, 1547, 1908, 2098, 2617
Hpy99I	CGWCG	1 cut(s)	2096
HpyAV	CCTTC	6 cut(s)	128, 239, 773, 1112, 1520, 1612
HpyCH4III	ACNGT	7 cut(s)	286, 420, 729, 786, 1082, 2212, 2296
HpyCH4IV	ACGT	5 cut(s)	75, 532, 1410, 2091, 2280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1211, 1451, 2408, 2513
HpyF3I	CTNAG	5 cut(s)	120, 719, 736, 1794, 2020
HpySE526I	ACGT	5 cut(s)	75, 532, 1410, 2091, 2280
Hsp92I	GRCGYC	1 cut(s)	2091
HspAI	GCGC	2 cut(s)	1725, 2390
Kpn2I	TCCGGA	2 cut(s)	538, 970
Ksp22I	TGATCA	3 cut(s)	564, 1645, 2353
LguI	GCTCTTC	1 cut(s)	1793
LmnI	GCTCC	2 cut(s)	541, 1288
Lsp1109I	GCAGC	1 cut(s)	2374
LweI	GCATC	9 cut(s)	590, 631, 637, 829, 1201, 1336, 1528, 1594, 2374
MaeI	CTAG	5 cut(s)	264, 527, 744, 1550, 1716
MaeII	ACGT	5 cut(s)	75, 532, 1410, 2091, 2280
MaeIII	GTNAC	5 cut(s)	253, 1504, 1879, 2011, 2200
MflI	RGATCY	2 cut(s)	2326, 2377
MhlI	GDGCHC	1 cut(s)	538
MlyI	GAGTC	3 cut(s)	450, 1794, 2637
MmeI	TCCRAC	4 cut(s)	618, 850, 2028, 2553
MroI	TCCGGA	2 cut(s)	538, 970
MslI	CAYNNNNRTG	2 cut(s)	657, 2108
MspA1I	CMGCKG	1 cut(s)	1634
MspCI	CTTAAG	1 cut(s)	2543
MspI	CCGG	5 cut(s)	94, 539, 971, 1858, 1939
MspR9I	CCNGG	3 cut(s)	94, 1858, 1859
Mva1269I	GAATGC	1 cut(s)	1454
MvnI	CGCG	2 cut(s)	67, 372
MwoI	GCNNNNNNNGC	4 cut(s)	1211, 1451, 2408, 2513
NciI	CCSGG	3 cut(s)	94, 1858, 1859
NlaIV	GGNNCC	4 cut(s)	58, 81, 749, 2379
NmeAIII	GCCGAG	2 cut(s)	968, 1753
NmuCI	GTSAC	1 cut(s)	253
NruI	TCGCGA	1 cut(s)	67
NspI	RCATGY	2 cut(s)	35, 1807
NspV	TTCGAA	1 cut(s)	1458
PagI	TCATGA	2 cut(s)	1920, 2109
PaqCI	CACCTGC	1 cut(s)	1532
PceI	AGGCCT	1 cut(s)	1530
PciI	ACATGT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	1793
PctI	GAATGC	1 cut(s)	1454
PfeI	GAWTC	8 cut(s)	16, 46, 69, 294, 436, 793, 1662, 2239
PflFI	GACNNNGTC	1 cut(s)	2093
PkrI	GCNGC	2 cut(s)	1633, 2389
PleI	GAGTC	3 cut(s)	449, 1793, 2637
PpsI	GAGTC	3 cut(s)	449, 1793, 2637
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	58, 81, 749, 2379
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	2614
PsuI	RGATCY	2 cut(s)	2326, 2377
PsyI	GACNNNGTC	1 cut(s)	2093
RruI	TCGCGA	1 cut(s)	67
RsaI	GTAC	5 cut(s)	139, 1413, 2190, 2541, 2616
RsaNI	GTAC	5 cut(s)	138, 1412, 2189, 2540, 2615
RseI	CAYNNNNRTG	2 cut(s)	657, 2108
SapI	GCTCTTC	1 cut(s)	1793
SatI	GCNGC	2 cut(s)	1632, 2388
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	3 cut(s)	450, 1794, 2637
ScrFI	CCNGG	3 cut(s)	94, 1858, 1859
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	9 cut(s)	590, 631, 637, 829, 1201, 1336, 1528, 1594, 2374
SfcI	CTRYAG	1 cut(s)	2610
SfuI	TTCGAA	1 cut(s)	1458
SinI	GGWCC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	1859
SmiMI	CAYNNNNRTG	2 cut(s)	657, 2108
SmlI	CTYRAG	2 cut(s)	1752, 2543
SmoI	CTYRAG	2 cut(s)	1752, 2543
SpeI	ACTAGT	1 cut(s)	1715
SseBI	AGGCCT	1 cut(s)	1530
SsiI	CCGC	3 cut(s)	4, 372, 1632
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	5 cut(s)	264, 527, 744, 1550, 1716
StuI	AGGCCT	1 cut(s)	1530
StyD4I	CCNGG	3 cut(s)	92, 1856, 1857
StyI	CCWWGG	1 cut(s)	2637
TaaI	ACNGT	7 cut(s)	286, 420, 729, 786, 1082, 2212, 2296
TaiI	ACGT	5 cut(s)	78, 535, 1413, 2094, 2283
TaqI	TCGA	7 cut(s)	49, 439, 1458, 1788, 1834, 2364, 2461
TatI	WGTACW	2 cut(s)	2539, 2614
TauI	GCSGC	1 cut(s)	1634
TfiI	GAWTC	8 cut(s)	16, 46, 69, 294, 436, 793, 1662, 2239
TscAI	CASTG	3 cut(s)	385, 454, 2318
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	2387
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	7 cut(s)	215, 1034, 1654, 1997, 2069, 2186, 2270
TspGWI	ACGGA	2 cut(s)	1389, 2251
TspMI	CCCGGG	1 cut(s)	1857
TspRI	CASTG	3 cut(s)	385, 454, 2318
Tth111I	GACNNNGTC	1 cut(s)	2093
Vha464I	CTTAAG	1 cut(s)	2543
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	6 cut(s)	556, 769, 1126, 1676, 1872, 2346
XceI	RCATGY	2 cut(s)	35, 1807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmaI	CCCGGG	1 cut(s)	1857
XmiI	GTMKAC	3 cut(s)	724, 1327, 2097
XspI	CTAG	5 cut(s)	264, 527, 744, 1550, 1716
ZraI	GACGTC	1 cut(s)	2092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.