FvH4_3g13690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010003
Physical Location & Seq
Forward (+)
8223450 .. 8225978
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13690.t1

Sequence Viewer

Length: 2529 bp
ATGTGGGTTCCTTTAGTTAGATTGAGTTTTCCCAGAAAGCTCGTTCAATCTTCAAGAAATAATCTCAACCAGTTTAGATTCATCAATTGGTTTTCAAGTTGCTCAATTTCTGATGATGATGATGTTTGCGCTACAAACACTAAGAAAAGCACCCAAGAGATTTATGGTGGTGGGATTGTGTGTGGGTTCAAGTGGGCATCTAAGTCTGCTGATGTTGATTCAGTTACCACAGACATTACCAATACCAATAGGAACCGTTTGGTTGCGGATTCGGAGACATTGGAGGTTGTTAACAAGCTGAACAGCTGTAAAACTAAACCCAATTCGGCGTTTTTGTTGTTTTGCAAGTTGAAGGAAGATGGGTTCCGGCACAATGTTTTGACATACTGTGCGCTTGTTAGGATATTGTGTTATTGGCGTTTGGATAGGAAGTTGGATTCTTTGTTCTTGGAGCTCATTAAGGGCTCTGGAGATGTTGGATTTGGATTAAAGGATTTGTTGGAAGCTATGGAGGAGGAAGTTGAGGTTTCCCCGTCAATAGTTCGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGACGCTATTGATGTTTTGTTCCATACCAGACGGCGTGGATTTGTGCAGCATATCTTTACAATTAATTATCTGATGAATCGGTTGATTGAGTGTGGTGAACTGGGTGCGGCTTTGTCTATTTACAAGCAGTTGAAAGGGATTGGTTTGGTCCCTAATGATTACACATATGCAATTGTCATCAAGGGATTTTGTATGGAGGGTAGGTTGGAAGAGGCTGGGGAAGTGTTTGAGGAGATGGAGTTAGCCGGGGTAGCCCCCAGCGTTTTTGCCTACACAGCATATATTGAAGGGCTTTGCAACAAGGGGCGTTCTGATGTAGGATGTCAAGTGCTCCAATATTGCAAAAGGGAAAATATACTTCTCGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAGATGAAATTTGATGAAGCAGAAAGTCTCTTTCTTGACATGGAAAAGCAAGGCATGGTGCCTGATTCATGCATCTACAGTGCAATGATTGGTGGCTACTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGCGTCATTGTTGGTTTTATTCTTCAGTGCCTCTGTAAGATTGGTATGGCTACTGAAGCGGTGGATCAATTCTTAGAATTTAAGAGCATGGGGATCTATCTTGACGAGGTTACCTACAATATTGCGGTTGATGCTTTATGCAGACTGAGCAGGGTGGAAGAAGCCTCTGAATTGCTGGAAGAGATGAAGCTAAAGAATATGAGCTTGGATATTATGCATTACACCACGTTGATTAAAGGGTACTGCCTCCTAGGGAAAGTTGTTGATGCCTCAAATATTTTGGAGGAAATGCACGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTGCTAGAAATGGCCTGGTATCTCAGGTGCTTGACCTTTTGGTTTATATAGAGGCACAGGGTTTAAGACCAGACTCTGTTACACACAGCATGGTAATTGAAAATCTATGCATAGGAGGAAAAGTCAAAGAAGCTAAAGCATTTTTAAATAATTTGGTAGATAAGAGTGAGGAGACCTACACTGCTCTGGTCCGTGGATACTGTGAAGCTAACAAAACAAGGAAGGCCTATGAACTTATCTCTAAGCTGGCAAAGCACGGAACCATTAACAAAGGTGCTTGCTTTAAAGTACTCAGTAATCTTTGTATGGAAGGTGATAATGTCAGAGCTATCTTGTTGTTTCAGAGAATGTTTGCCTTAAATGTGGAACCGAAGACAATTATGTATAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGCAAAAGGCCCGCCAGTTTTTTTATTCTTCAGTAGAGAGAGGGTTTACTCCTGATGCGGTTGACTACACAGTGATGATAAATAGCTACTGTAGGGAGAATTCCTTGCGGGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTTGATGGGTTTTCAAAAAGAAACATACGAAGGGTTCGTTCCCCTCTAGATGCAAGGGGAAATAGGGAAGAAATGGCGGATGCTTCTACTATACTTTGGACTGAGATGAAACAACTGGGAATACAACCTGATGCCATTTGTTACACTGTTTTGGTAGACAGACATTGTAAAGCAGACAACCTTCGGGATGCTATTGCACTCTTTGATGTAATGATTGAAAGAGGATTAAAACCTGATACAGTGACATACACAGCTCTTCTGTCTGGCTGTTGCAAAAGAGGAGATGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCTTCGAGGGGAATACAGCCAGATGCCTATACACTGTCAGTTCTACAGCATGGAATCTTAAAAGCCAAAAAAGTGCAGTTTCGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

843

Amino Acids

94.7

Weight (kDa)

6.38

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 216 - 262 3.2e-09 PPR repeat family
PPR_1 PF12854 246 - 278 7.1e-11 PPR repeat
PPR PF01535 252 - 282 5.2e-06 PPR repeat
PPR_2 PF13041 256 - 298 8.6e-10 PPR repeat family
PPR_2 PF13041 284 - 333 8.1e-08 PPR repeat family
PPR_3 PF13812 308 - 368 1e-05 Pentatricopeptide repeat domain
PPR_2 PF13041 320 - 368 3e-10 PPR repeat family
PPR_1 PF12854 351 - 383 6.1e-06 PPR repeat
PPR_2 PF13041 354 - 403 6.7e-08 PPR repeat family
PPR PF01535 358 - 387 4.7e-06 PPR repeat
PPR_2 PF13041 396 - 438 1.1e-06 PPR repeat family
PPR_1 PF12854 420 - 453 3e-09 PPR repeat
PPR_2 PF13041 425 - 472 1.6e-10 PPR repeat family
PPR PF01535 427 - 456 4.6e-06 PPR repeat
PPR_3 PF13812 448 - 502 1.4e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 455 - 487 1.2e-07 PPR repeat
PPR_2 PF13041 460 - 508 3.1e-12 PPR repeat family
PPR PF01535 463 - 492 4.4e-06 PPR repeat
PPR_2 PF13041 629 - 677 2.5e-07 PPR repeat family
PPR_3 PF13812 658 - 712 1.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 660 - 693 7.2e-09 PPR repeat
PPR_2 PF13041 664 - 713 1.5e-18 PPR repeat family
PPR_long PF17177 667 - 828 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR PF01535 669 - 697 4.4e-08 PPR repeat
PPR_3 PF13812 740 - 799 3.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 747 - 778 9.9e-08 PPR repeat
PPR_2 PF13041 750 - 799 3.1e-15 PPR repeat family
PPR_3 PF13812 774 - 827 1.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 781 - 814 4.1e-13 PPR repeat
PPR_2 PF13041 785 - 831 2.2e-15 PPR repeat family
PPR PF01535 788 - 818 4.7e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1057
AccI GTMKAC 1 cut(s) 2277
AciI CCGC 8 cut(s) 266, 701, 1229, 1295, 1951, 1997, 2047, 2198
AclWI GGATC 2 cut(s) 1242, 1271
AcsI RAATTY 3 cut(s) 1007, 1247, 2038
AcuI CTGAAG 3 cut(s) 1178, 1245, 1953
AfaI GTAC 2 cut(s) 1412, 1806
AflIII ACRYGT 1 cut(s) 585
AhdI GACNNNNNGTC 1 cut(s) 1147
AjnI CCWGG 2 cut(s) 1530, 1926
AjuI GAANNNNNNNTTGG 2 cut(s) 1358, 1390
AloI GAACNNNNNNTCC 4 cut(s) 347, 379, 428, 460
Alw21I GWGCWC 2 cut(s) 456, 927
Alw26I GTCTC 4 cut(s) 269, 573, 1031, 1682
AlwI GGATC 2 cut(s) 1242, 1271
AlwNI CAGNNNCTG 1 cut(s) 1592
AoxI GGCC 3 cut(s) 1528, 1740, 1947
ApeKI GCWGC 2 cut(s) 640, 1508
ApoI RAATTY 3 cut(s) 1007, 1247, 2038
AseI ATTAAT 1 cut(s) 657
AspA2I CCTAGG 1 cut(s) 1420
AspLEI GCGC 2 cut(s) 131, 394
AspS9I GGNCC 3 cut(s) 742, 1705, 1948
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 2 cut(s) 701, 1841
AvaII GGWCC 2 cut(s) 742, 1705
AvrII CCTAGG 1 cut(s) 1420
BanI GGYRCC 1 cut(s) 1057
BanII GRGCYC 2 cut(s) 456, 467
BauI CACGAG 1 cut(s) 1463
BbsI GAAGAC 2 cut(s) 1895, 2433
Bbv12I GWGCWC 2 cut(s) 456, 927
BbvI GCAGC 2 cut(s) 652, 1495
BccI CCATC 3 cut(s) 353, 823, 2120
BceAI ACGGC 1 cut(s) 641
BcgI CGANNNNNNTGC 2 cut(s) 947, 981
BciT130I CCWGG 2 cut(s) 1532, 1928
BciVI GTATCC 1 cut(s) 1706
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 4 cut(s) 269, 573, 1031, 1682
BfaI CTAG 4 cut(s) 1421, 1521, 2168, 2426
BfmI CTRYAG 4 cut(s) 1075, 1509, 2029, 2483
BfuI GTATCC 1 cut(s) 1706
BisI GCNGC 3 cut(s) 641, 702, 1509
BlnI CCTAGG 1 cut(s) 1420
BlsI GCNGC 3 cut(s) 642, 703, 1510
BmcAI AGTACT 1 cut(s) 1806
Bme1390I CCNGG 3 cut(s) 841, 1532, 1928
Bme18I GGWCC 2 cut(s) 742, 1705
BmeRI GACNNNNNGTC 1 cut(s) 1147
BmgT120I GGNCC 3 cut(s) 742, 1705, 1948
BmiI GGNNCC 7 cut(s) 9, 254, 365, 744, 1059, 1777, 1884
BmrFI CCNGG 3 cut(s) 841, 1532, 1928
BmrI ACTGGG 2 cut(s) 704, 2246
BmuI ACTGGG 2 cut(s) 704, 2246
BpiI GAAGAC 2 cut(s) 1895, 2433
BpmI CTGGAG 2 cut(s) 489, 1953
BpuMI CCSGG 1 cut(s) 841
BsaI GGTCTC 1 cut(s) 1682
BsaJI CCNNGG 3 cut(s) 840, 1420, 1708
BsaXI ACNNNNNCTCC 6 cut(s) 782, 812, 818, 848, 1623, 1653
Bse1I ACTGG 4 cut(s) 70, 699, 1954, 2241
Bse3DI GCAATG 1 cut(s) 1089
BseBI CCWGG 2 cut(s) 1532, 1928
BseDI CCNNGG 3 cut(s) 840, 1420, 1708
BseGI GGATG 3 cut(s) 920, 2206, 2314
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 4 cut(s) 1307, 1553, 1822, 2214
BseNI ACTGG 4 cut(s) 70, 699, 1954, 2241
BseRI GAGGAG 4 cut(s) 527, 839, 1700, 2415
BseXI GCAGC 2 cut(s) 652, 1495
BseYI CCCAGC 2 cut(s) 809, 851
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 3 cut(s) 1530, 1742, 1949
BshNI GGYRCC 1 cut(s) 1057
BsiHKAI GWGCWC 2 cut(s) 456, 927
BsiSI CCGG 2 cut(s) 367, 840
BslFI GGGAC 1 cut(s) 728
BsmAI GTCTC 4 cut(s) 269, 573, 1031, 1682
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 3 cut(s) 1530, 1742, 1949
Bso31I GGTCTC 1 cut(s) 1682
Bsp1286I GDGCHC 3 cut(s) 456, 467, 927
Bsp143I GATC 3 cut(s) 1234, 1263, 2059
BspACI CCGC 8 cut(s) 266, 701, 1229, 1295, 1951, 1997, 2047, 2198
BspANI GGCC 3 cut(s) 1530, 1742, 1949
BspCNI CTCAG 4 cut(s) 1308, 1552, 1821, 2215
BspLI GGNNCC 7 cut(s) 9, 254, 365, 744, 1059, 1777, 1884
BspMAI CTGCAG 1 cut(s) 1513
BspPI GGATC 2 cut(s) 1242, 1271
BspQI GCTCTTC 1 cut(s) 2382
BspT107I GGYRCC 1 cut(s) 1057
BspTNI GGTCTC 1 cut(s) 1682
BsrDI GCAATG 1 cut(s) 1089
BsrI ACTGG 4 cut(s) 70, 699, 1954, 2241
BssECI CCNNGG 3 cut(s) 840, 1420, 1708
BssMI GATC 3 cut(s) 1234, 1263, 2059
BssSI CACGAG 1 cut(s) 1463
BssT1I CCWWGG 1 cut(s) 1420
Bst2BI CACGAG 1 cut(s) 1463
Bst2UI CCWGG 2 cut(s) 1532, 1928
Bst6I CTCTTC 4 cut(s) 798, 1344, 2069, 2382
BstAPI GCANNNNNTGC 1 cut(s) 1517
BstC8I GCNNGC 3 cut(s) 1764, 1795, 1951
BstDEI CTNAG 8 cut(s) 141, 201, 1243, 1316, 1539, 1758, 1808, 2223
BstDSI CCRYGG 1 cut(s) 1708
BstEII GGTNACC 1 cut(s) 1279
BstF5I GGATG 3 cut(s) 920, 2206, 2314
BstHHI GCGC 2 cut(s) 131, 394
BstKTI GATC 3 cut(s) 1237, 1266, 2062
BstMAI GTCTC 4 cut(s) 269, 573, 1031, 1682
BstMBI GATC 3 cut(s) 1234, 1263, 2059
BstMWI GCNNNNNNNGC 8 cut(s) 845, 869, 974, 1226, 1301, 1317, 1517, 1768
BstNI CCWGG 2 cut(s) 1532, 1928
BstNSI RCATGY 1 cut(s) 589
BstPI GGTNACC 1 cut(s) 1279
BstSCI CCNGG 3 cut(s) 839, 1530, 1926
BstSFI CTRYAG 4 cut(s) 1075, 1509, 2029, 2483
BstV1I GCAGC 2 cut(s) 652, 1495
BstV2I GAAGAC 2 cut(s) 1895, 2433
BstX2I RGATCY 1 cut(s) 1263
BstYI RGATCY 1 cut(s) 1263
BsuI GTATCC 1 cut(s) 1706
BsuRI GGCC 3 cut(s) 1530, 1742, 1949
BtgI CCRYGG 1 cut(s) 1708
BtsCI GGATG 3 cut(s) 920, 2206, 2314
BtsI GCAGTG 1 cut(s) 1695
BtsIMutI CAGTG 7 cut(s) 1084, 1202, 1695, 2016, 2265, 2367, 2471
Cac8I GCNNGC 3 cut(s) 1764, 1795, 1951
CaiI CAGNNNCTG 1 cut(s) 1592
CfoI GCGC 2 cut(s) 131, 394
Cfr13I GGNCC 3 cut(s) 742, 1705, 1948
CseI GACGC 2 cut(s) 605, 1162
Csp6I GTAC 2 cut(s) 1411, 1805
CviQI GTAC 2 cut(s) 1411, 1805
DdeI CTNAG 8 cut(s) 141, 201, 1243, 1316, 1539, 1758, 1808, 2223
DpnI GATC 3 cut(s) 1236, 1265, 2061
DpnII GATC 3 cut(s) 1234, 1263, 2059
DraI TTTAAA 2 cut(s) 1662, 1801
DriI GACNNNNNGTC 1 cut(s) 1147
Eam1104I CTCTTC 4 cut(s) 798, 1344, 2069, 2382
Eam1105I GACNNNNNGTC 1 cut(s) 1147
EarI CTCTTC 4 cut(s) 798, 1344, 2069, 2382
EciI GGCGGA 1 cut(s) 2213
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 1420
Eco147I AGGCCT 1 cut(s) 1742
Eco24I GRGCYC 2 cut(s) 456, 467
Eco31I GGTCTC 1 cut(s) 1682
Eco32I GATATC 1 cut(s) 2101
Eco47I GGWCC 2 cut(s) 742, 1705
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 3 cut(s) 1178, 1245, 1953
Eco91I GGTNACC 1 cut(s) 1279
EcoICRI GAGCTC 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 1279
EcoRI GAATTC 1 cut(s) 2038
EcoRII CCWGG 2 cut(s) 1530, 1926
EcoRV GATATC 1 cut(s) 2101
EcoT14I CCWWGG 1 cut(s) 1420
EcoT22I ATGCAT 5 cut(s) 559, 970, 1073, 1389, 1628
EcoT38I GRGCYC 2 cut(s) 456, 467
ErhI CCWWGG 1 cut(s) 1420
FaqI GGGAC 1 cut(s) 728
FauI CCCGC 2 cut(s) 1958, 2040
FauNDI CATATG 1 cut(s) 760
FblI GTMKAC 1 cut(s) 2277
Fnu4HI GCNGC 3 cut(s) 641, 702, 1509
FokI GGATG 3 cut(s) 927, 2213, 2321
FriOI GRGCYC 2 cut(s) 456, 467
Fsp4HI GCNGC 3 cut(s) 641, 702, 1509
FspBI CTAG 4 cut(s) 1421, 1521, 2168, 2426
GlaI GCGC 2 cut(s) 130, 393
GluI GCNGC 3 cut(s) 641, 702, 1509
GsaI CCCAGC 2 cut(s) 813, 855
GsuI CTGGAG 2 cut(s) 489, 1953
HaeIII GGCC 3 cut(s) 1530, 1742, 1949
HapII CCGG 2 cut(s) 367, 840
HgaI GACGC 2 cut(s) 605, 1162
HhaI GCGC 2 cut(s) 131, 394
Hin6I GCGC 2 cut(s) 129, 392
HinP1I GCGC 2 cut(s) 129, 392
HincII GTYRAC 2 cut(s) 292, 2002
HindII GTYRAC 2 cut(s) 292, 2002
HinfI GANTC 9 cut(s) 78, 218, 269, 437, 670, 1064, 1589, 2089, 2493
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 367, 840
HphI GGTGA 2 cut(s) 701, 1841
Hpy166II GTNNAC 5 cut(s) 292, 692, 1986, 2002, 2278
Hpy188I TCNGA 8 cut(s) 112, 274, 666, 907, 1339, 1841, 1860, 2523
Hpy188III TCNNGA 8 cut(s) 54, 468, 956, 1034, 1271, 1991, 2168, 2306
Hpy8I GTNNAC 5 cut(s) 292, 692, 1986, 2002, 2278
HpyAV CCTTC 7 cut(s) 346, 875, 1462, 1732, 1820, 2145, 2312
HpyCH4IV ACGT 1 cut(s) 1397
HpyF10VI GCNNNNNNNGC 8 cut(s) 845, 869, 974, 1226, 1301, 1317, 1517, 1768
HpyF3I CTNAG 8 cut(s) 141, 201, 1243, 1316, 1539, 1758, 1808, 2223
HpySE526I ACGT 1 cut(s) 1397
HspAI GCGC 2 cut(s) 129, 392
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 1234, 1263, 2059
LguI GCTCTTC 1 cut(s) 2382
LmnI GCTCC 2 cut(s) 451, 930
Lsp1109I GCAGC 2 cut(s) 652, 1495
MaeI CTAG 4 cut(s) 1421, 1521, 2168, 2426
MaeII ACGT 1 cut(s) 1397
MaeIII GTNAC 6 cut(s) 223, 1279, 1594, 2261, 2362, 2419
MalI GATC 3 cut(s) 1236, 1265, 2061
MboI GATC 3 cut(s) 1234, 1263, 2059
MfeI CAATTG 2 cut(s) 85, 765
MflI RGATCY 1 cut(s) 1263
MhlI GDGCHC 3 cut(s) 456, 467, 927
MlyI GAGTC 1 cut(s) 1583
MmeI TCCRAC 4 cut(s) 414, 457, 480, 780
Mph1103I ATGCAT 5 cut(s) 559, 970, 1073, 1389, 1628
MslI CAYNNNNRTG 1 cut(s) 2012
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 367, 840
MspR9I CCNGG 3 cut(s) 841, 1532, 1928
MunI CAATTG 2 cut(s) 85, 765
MvaI CCWGG 2 cut(s) 1532, 1928
MwoI GCNNNNNNNGC 8 cut(s) 845, 869, 974, 1226, 1301, 1317, 1517, 1768
NciI CCSGG 1 cut(s) 841
NdeI CATATG 1 cut(s) 760
NdeII GATC 3 cut(s) 1234, 1263, 2059
NlaIV GGNNCC 7 cut(s) 9, 254, 365, 744, 1059, 1777, 1884
NmuCI GTSAC 1 cut(s) 2362
NsiI ATGCAT 5 cut(s) 559, 970, 1073, 1389, 1628
NspI RCATGY 1 cut(s) 589
PceI AGGCCT 1 cut(s) 1742
PciI ACATGT 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 2382
PcsI WCGNNNNNNNCGW 1 cut(s) 2155
PfeI GAWTC 8 cut(s) 78, 218, 269, 437, 670, 1064, 2089, 2493
PkrI GCNGC 3 cut(s) 642, 703, 1510
PleI GAGTC 1 cut(s) 1583
PpsI GAGTC 1 cut(s) 1583
PscI ACATGT 1 cut(s) 585
PshBI ATTAAT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 1530, 1926
PspEI GGTNACC 1 cut(s) 1279
PspFI CCCAGC 2 cut(s) 809, 851
PspGI CCWGG 2 cut(s) 1530, 1926
PspN4I GGNNCC 7 cut(s) 9, 254, 365, 744, 1059, 1777, 1884
PspPI GGNCC 3 cut(s) 742, 1705, 1948
PstI CTGCAG 1 cut(s) 1513
PstNI CAGNNNCTG 1 cut(s) 1592
PsuI RGATCY 1 cut(s) 1263
PvuII CAGCTG 1 cut(s) 306
RsaI GTAC 2 cut(s) 1412, 1806
RsaNI GTAC 2 cut(s) 1411, 1805
RseI CAYNNNNRTG 1 cut(s) 2012
SacI GAGCTC 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 2382
SatI GCNGC 3 cut(s) 641, 702, 1509
Sau3AI GATC 3 cut(s) 1234, 1263, 2059
Sau96I GGNCC 3 cut(s) 742, 1705, 1948
ScaI AGTACT 1 cut(s) 1806
SchI GAGTC 1 cut(s) 1583
ScrFI CCNGG 3 cut(s) 841, 1532, 1928
SduI GDGCHC 3 cut(s) 456, 467, 927
SfcI CTRYAG 4 cut(s) 1075, 1509, 2029, 2483
SinI GGWCC 2 cut(s) 742, 1705
SmiMI CAYNNNNRTG 1 cut(s) 2012
SseBI AGGCCT 1 cut(s) 1742
SsiI CCGC 8 cut(s) 266, 701, 1229, 1295, 1951, 1997, 2047, 2198
SspI AATATT 3 cut(s) 932, 1291, 1447
SspMI CTAG 4 cut(s) 1421, 1521, 2168, 2426
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 1 cut(s) 1742
StyD4I CCNGG 3 cut(s) 839, 1530, 1926
StyI CCWWGG 1 cut(s) 1420
TaiI ACGT 1 cut(s) 1400
TaqI TCGA 2 cut(s) 957, 2444
TatI WGTACW 1 cut(s) 1804
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 8 cut(s) 78, 218, 269, 437, 670, 1064, 2089, 2493
TscAI CASTG 7 cut(s) 1084, 1202, 1702, 2016, 2272, 2367, 2478
TseFI GTSAC 1 cut(s) 2362
TseI GCWGC 2 cut(s) 640, 1508
Tsp45I GTSAC 1 cut(s) 2362
TspDTI ATGAA 9 cut(s) 70, 683, 1019, 1029, 1056, 1370, 1761, 2090, 2243
TspGWI ACGGA 2 cut(s) 1697, 1788
TspRI CASTG 7 cut(s) 1084, 1202, 1702, 2016, 2272, 2367, 2478
VpaK11BI GGWCC 2 cut(s) 742, 1705
VspI ATTAAT 1 cut(s) 657
XapI RAATTY 3 cut(s) 1007, 1247, 2038
XbaI TCTAGA 1 cut(s) 2167
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XmaJI CCTAGG 1 cut(s) 1420
XmiI GTMKAC 1 cut(s) 2277
XspI CTAG 4 cut(s) 1421, 1521, 2168, 2426
ZrmI AGTACT 1 cut(s) 1806
Zsp2I ATGCAT 5 cut(s) 559, 970, 1073, 1389, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.