MD10G1219600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010003
Physical Location & Seq
Reverse (-)
31707709 .. 31712747
5039 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1219600.v1.1.491

Sequence Viewer

Length: 2523 bp
ATGTGTATGTGGCTTTCGTCCATTAGACTGGGTTTTCCCAGAAAACGCATTCACCCAACACAAAACAATCGCAGCCGTTCGATCTTCGTCCATGGCGGCGGTGGCGGTGTTGGTGCTTTCAAGTGGGCGTCTTCCCAGGCAGCACTTGCCCTCTGGAACTCCAGTTCCTCCCACTCTGATGAATCGTCTGATGATAATTCTTTCAGTGTCTGCACCACAAACGCAGGCACCAATGCTGCCAATAGAACCCATTTCTTCTCCGAATTAGATACCTCAGGGGTTGTTAACAACCTCAACAGTCTAAGAAACGAACCCAATTTGGCGATTTCATTCTTTCACCGGGTGAAAGGAGATGGCTTTCGACACAATGTCTACACGTATTCTGCGCTTATTAGAATTTTGTGCTATTGGGGTCTGGATAGGAAGTTGGATTCTCTCTTTGTGGACCTTATTAATTGCTCTAAAGACCTTGAATTTGAGTTTTCGGATTTGATGGAAGCGATTGGGGAGGGGATTGAGGTTTCCCCATCGACAGTCCGAGCTTATGATGCATTGCTCAAGTCTTTTGTCAGTTTGAACATGTTCGATGAGGCTATTGATGTTTTATTTCAGACAAAAAGGCGTGGGTTTGTGCCACATATCTTTACTAGCAATTTTCTAATGAACCGCTTGGTTGAGCATGGTAAAGTGGATATGGCTGTGGCTGTATATAAGCAGTTGAAGCGGATTGGTTTGAACCCTAATGATTACACTTACGCAATTATCATCAAGGGACTCTGCAAGAAAGGTAGTTTGGAAGAGGCAGTGGAAGTGTTTCAGGAGATGGAGGAAGCTGGGGTAACCCCTAGCGCCTTTGCCTACACAGCATATATTGAAGGGCTTTGCACCAATCACAGGCCGGATTTAGGGTACCAAGTGCTCCAATCATGCAATGGGGAAAATGTCCTTATCGATGTGTATGCTTATAACGCTGTCATTCGTGGGTTCTGCAACGAGATGAAGTTTGATGAAGCTGAAAGCGTCTTTCTTGACATGGAAAAGCGAGGGCTGGTCCCTGATTCATATACCTACAGTGCAATGATCTGTGGCTACTGCAAGAGTTCCAAGTTGTTAAAAGCTTTGGCTCTCCATAATGACATGGAGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTAGTTTGATTCTTCAGTGTATGTGTAAGATGGGCATGCCTTCTGAAGCGGTGGATCAGTTTAGAGAATATAAGAGCTTAGGTATCTATCTTGATGAGGTTTCGTACAATATCGCAGTGGATGCTTCGTGCAAGCTGGGGAAAATGGACCAAGCCTTAGAATTTCTTGAAGAGATGAAGTGTAAGCATATGGTTTTAGATATTATGCATTACACAACATTGATCAAAGGCTACTGTCTCCAAGGGAATGTTGTTGAGGCCGTAAGTCTGTTGAAGGAAATGAAGGAAAAGGGTCTGAAGCCAGACATCACTACTTACAATGTACTTGCTGCTGGGTTTTGTAGAAATGGCCTGGGAGCCAAGGCGCTTGACCTTTTGGATTATATGGAGGCACATGGTTTTAAACCAGACTCTGTTACACACAACATGATAATTGAAAATTTATGCATAGGAGGAAAAGTCAAAGAAGCTGAAGGTTTTCTAAACAGTTTGGAATATAAGAATGTAGATACCTATTCTGCCATGGTCAGCGGGTACTGTGAAGCCAACCATACAAAAGAGGCGTATGAACTTCTTATTAGGTTGGCAAAGCAAGGAACTTTAGTTAAACAAGGCGTTTGCTTTAAAGTACTCAGTAAACTTTGTGTAGAAGGTGATAATGACAGAGCTATTTTGTTGCTTGAGGCAATGTTGGCGTTAAATGTGGATCCTAAAAGAATTATGTACAACAAAGTCATTGCTTCTCTCTGCCAGGCTGGAGAGGTGAAAAAGGCCCGTTGGGTTTTTGATTCTTTGGTTGAGAGAGGGTTAACTCCTGATGTGATTACCTACACAATGATGATGAATAGCTACTGCAAGGTGGATTGTTTGCAAGAAGCCCGTGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTCGATAGTTTTCCCAAAAGAAACGTAAGAAGGGTTAATTCCTCTCGAGATGCAAGTGGAGATAAGGAAGAAACTTTTGATGCTTGTACTGTTTGGAGTGAGATGAAGGAAATGGAAATAAGACCCGATGTAATTTGTTATACTGTTTTGATAGACAGGCAATGTAAAACTGACAACTTTCAGGATGCTATTGCGCTTTTTGATGAAATGATGAACAGAGGATTAGAGCCTGATACAGTGACATACACAGCACTTCTGGCTGGCTGTTGTAGGAGGGGAGATGTGGATAGGGCTGTAACACTCGCTAATGAGATGTCCTCTAAGGGAATGCTGCCAAATGCCCGGATACTTGCGATTCTACAACATGGAATCCTAAAAGCCACGAAAGTGCAGTTTCGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

841

Amino Acids

94.24

Weight (kDa)

6.09

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 212 - 261 4.6e-13 PPR repeat family
TPR_24 PF23276 226 - 342 1.2e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 238 - 291 1.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 244 - 276 1.9e-12 PPR repeat
PPR PF01535 250 - 280 6.7e-08 PPR repeat
PPR_2 PF13041 254 - 295 2.7e-11 PPR repeat family
PPR_long PF17177 302 - 404 6.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 306 - 362 5.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 318 - 366 2.8e-17 PPR repeat family
PPR PF01535 321 - 350 6.2e-07 PPR repeat
PPR_1 PF12854 348 - 381 1.5e-08 PPR repeat
PPR PF01535 355 - 385 3e-07 PPR repeat
PPR_2 PF13041 357 - 389 8.8e-06 PPR repeat family
PPR_1 PF12854 419 - 451 1.4e-07 PPR repeat
PPR_long PF17177 438 - 529 9.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 455 - 486 2.7e-09 PPR repeat
PPR_3 PF13812 457 - 500 5.8e-10 Pentatricopeptide repeat domain
TPR_24 PF23276 457 - 548 6.7e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 458 - 506 1.1e-15 PPR repeat family
PPR PF01535 461 - 490 1.4e-08 PPR repeat
PPR_3 PF13812 480 - 537 8.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 488 - 521 4.9e-08 PPR repeat
PPR_2 PF13041 503 - 540 3.7e-08 PPR repeat family
PPR_1 PF12854 524 - 553 3e-06 PPR repeat
PPR_2 PF13041 630 - 677 2.2e-12 PPR repeat family
PPR_1 PF12854 659 - 692 7e-08 PPR repeat
PPR_2 PF13041 663 - 710 7.4e-18 PPR repeat family
PPR PF01535 666 - 696 3.2e-08 PPR repeat
PPR_long PF17177 668 - 821 2.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 745 - 776 5.5e-06 PPR repeat
PPR_2 PF13041 748 - 797 1.3e-16 PPR repeat family
PPR_3 PF13812 772 - 819 1.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 779 - 812 5.5e-11 PPR repeat
PPR_2 PF13041 783 - 820 5.7e-10 PPR repeat family
PPR PF01535 786 - 815 7.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
Acc65I GGTACC 1 cut(s) 909
AccB1I GGYRCC 2 cut(s) 227, 909
AccI GTMKAC 1 cut(s) 372
AciI CCGC 7 cut(s) 96, 99, 105, 667, 724, 1223, 1704
AclWI GGATC 3 cut(s) 1236, 1874, 1887
AcsI RAATTY 4 cut(s) 396, 473, 1334, 1612
AcuI CTGAAG 4 cut(s) 1172, 1239, 1490, 1665
AcyI GRCGYC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 7 cut(s) 911, 1280, 1497, 1709, 1803, 1898, 2206
AfiI CCNNNNNNNGG 2 cut(s) 894, 905
AflIII ACRYGT 2 cut(s) 375, 579
AhdI GACNNNNNGTC 2 cut(s) 368, 1141
AjnI CCWGG 3 cut(s) 135, 1524, 1923
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AleI CACNNNNGTG 1 cut(s) 2504
AloI GAACNNNNNNTCC 4 cut(s) 148, 149, 180, 181
AluBI AGCT 9 cut(s) 542, 833, 1013, 1118, 1251, 1309, 1643, 1841, 2022
AluI AGCT 9 cut(s) 542, 833, 1013, 1118, 1251, 1309, 1643, 1841, 2022
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 1 cut(s) 1415
AlwI GGATC 3 cut(s) 1236, 1874, 1887
AlwNI CAGNNNCTG 2 cut(s) 210, 1586
Ama87I CYCGRG 1 cut(s) 2163
AoxI GGCC 4 cut(s) 896, 1431, 1522, 1944
ApeKI GCWGC 5 cut(s) 72, 140, 236, 1502, 2449
ApoI RAATTY 4 cut(s) 396, 473, 1334, 1612
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 3 cut(s) 581, 813, 1650
Asp718I GGTACC 1 cut(s) 909
AspLEI GCGC 4 cut(s) 388, 851, 1540, 2314
AspS9I GGNCC 4 cut(s) 445, 1051, 1321, 1945
AsuC2I CCSGG 2 cut(s) 341, 2461
AsuHPI GGTGA 5 cut(s) 44, 329, 355, 1838, 1948
AvaI CYCGRG 1 cut(s) 2163
AvaII GGWCC 3 cut(s) 445, 1051, 1321
AxyI CCTNAGG 1 cut(s) 274
BamHI GGATCC 1 cut(s) 1879
BanI GGYRCC 2 cut(s) 227, 909
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 5 cut(s) 84, 152, 223, 1489, 2436
BccI CCATC 5 cut(s) 347, 487, 535, 817, 1198
BceAI ACGGC 2 cut(s) 60, 1418
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 3 cut(s) 137, 1526, 1925
BciVI GTATCC 1 cut(s) 2457
BclI TGATCA 1 cut(s) 1395
BcnI CCSGG 2 cut(s) 341, 2461
BcoDI GTCTC 1 cut(s) 1415
BfaI CTAG 2 cut(s) 648, 846
BfmI CTRYAG 1 cut(s) 1069
BfoI RGCGCY 2 cut(s) 852, 1541
BfuI GTATCC 1 cut(s) 2457
BisI GCNGC 6 cut(s) 73, 97, 141, 237, 1503, 2450
BlsI GCNGC 6 cut(s) 74, 98, 142, 238, 1504, 2451
BmcAI AGTACT 1 cut(s) 1803
Bme1390I CCNGG 5 cut(s) 137, 341, 1526, 1925, 2461
Bme18I GGWCC 3 cut(s) 445, 1051, 1321
BmeRI GACNNNNNGTC 2 cut(s) 368, 1141
BmeT110I CYCGRG 1 cut(s) 2163
BmgT120I GGNCC 4 cut(s) 445, 1051, 1321, 1945
BmiI GGNNCC 5 cut(s) 229, 911, 1053, 1531, 1881
BmrFI CCNGG 5 cut(s) 137, 341, 1526, 1925, 2461
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 5 cut(s) 538, 1285, 2158, 2188, 2293
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 2420, 2452
BpmI CTGGAG 2 cut(s) 145, 1950
Bpu10I CCTNAGC 1 cut(s) 1252
BpuEI CTTGAG 2 cut(s) 542, 1874
BpuMI CCSGG 2 cut(s) 341, 2461
Bsa29I ATCGAT 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 6 cut(s) 91, 135, 1414, 1525, 1533, 1695
BsaXI ACNNNNNCTCC 2 cut(s) 1617, 1647
Bsc4I CCNNNNNNNGG 2 cut(s) 894, 905
Bse1I ACTGG 2 cut(s) 33, 162
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 6 cut(s) 551, 937, 1083, 1866, 1908, 2285
BseBI CCWGG 3 cut(s) 137, 1526, 1925
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 6 cut(s) 91, 135, 1414, 1525, 1533, 1695
BseGI GGATG 2 cut(s) 1300, 2308
BseLI CCNNNNNNNGG 2 cut(s) 894, 905
BseMI GCAATG 6 cut(s) 551, 937, 1083, 1866, 1908, 2285
BseMII CTCAG 2 cut(s) 288, 1819
BseNI ACTGG 2 cut(s) 33, 162
BseXI GCAGC 5 cut(s) 84, 152, 223, 1489, 2436
BseYI CCCAGC 3 cut(s) 833, 1309, 1505
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 4 cut(s) 898, 1433, 1524, 1946
BshNI GGYRCC 2 cut(s) 227, 909
BshVI ATCGAT 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 921
BsiHKCI CYCGRG 1 cut(s) 2163
BsiSI CCGG 3 cut(s) 340, 899, 2461
BslFI GGGAC 2 cut(s) 786, 1037
BslI CCNNNNNNNGG 2 cut(s) 894, 905
BsmAI GTCTC 1 cut(s) 1415
BsmFI GGGAC 2 cut(s) 786, 1037
BsmI GAATGC 2 cut(s) 48, 2451
BsnI GGCC 4 cut(s) 898, 1433, 1524, 1946
BsoBI CYCGRG 1 cut(s) 2163
Bsp1286I GDGCHC 1 cut(s) 921
Bsp1407I TGTACA 1 cut(s) 1896
Bsp143I GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
Bsp19I CCATGG 2 cut(s) 91, 1695
BspACI CCGC 7 cut(s) 96, 99, 105, 667, 724, 1223, 1704
BspANI GGCC 4 cut(s) 898, 1433, 1524, 1946
BspCNI CTCAG 2 cut(s) 287, 1818
BspDI ATCGAT 1 cut(s) 951
BspLI GGNNCC 5 cut(s) 229, 911, 1053, 1531, 1881
BspPI GGATC 3 cut(s) 1236, 1874, 1887
BspT107I GGYRCC 2 cut(s) 227, 909
BsrDI GCAATG 6 cut(s) 551, 937, 1083, 1866, 1908, 2285
BsrGI TGTACA 1 cut(s) 1896
BsrI ACTGG 2 cut(s) 33, 162
BssECI CCNNGG 6 cut(s) 91, 135, 1414, 1525, 1533, 1695
BssMI GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 4 cut(s) 91, 1414, 1533, 1695
Bst2UI CCWGG 3 cut(s) 137, 1526, 1925
Bst6I CTCTTC 3 cut(s) 792, 1338, 2066
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 2 cut(s) 146, 1295
BstAUI TGTACA 1 cut(s) 1896
BstBAI YACGTR 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 226, 1211, 1307, 2380
BstDEI CTNAG 6 cut(s) 274, 302, 1252, 1330, 1805, 2439
BstDSI CCRYGG 2 cut(s) 91, 1695
BstEII GGTNACC 1 cut(s) 838
BstF5I GGATG 2 cut(s) 1300, 2308
BstH2I RGCGCY 2 cut(s) 852, 1541
BstHHI GCGC 4 cut(s) 388, 851, 1540, 2314
BstKTI GATC 6 cut(s) 84, 1083, 1231, 1398, 1882, 2059
BstMAI GTCTC 1 cut(s) 1415
BstMBI GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
BstMWI GCNNNNNNNGC 9 cut(s) 102, 146, 548, 721, 863, 968, 1295, 1865, 2375
BstNI CCWGG 3 cut(s) 137, 1526, 1925
BstNSI RCATGY 2 cut(s) 583, 1213
BstPI GGTNACC 1 cut(s) 838
BstSCI CCNGG 5 cut(s) 135, 339, 1524, 1923, 2459
BstSFI CTRYAG 1 cut(s) 1069
BstV1I GCAGC 5 cut(s) 84, 152, 223, 1489, 2436
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 1879
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 1879
Bsu15I ATCGAT 1 cut(s) 951
Bsu36I CCTNAGG 1 cut(s) 274
BsuI GTATCC 1 cut(s) 2457
BsuRI GGCC 4 cut(s) 898, 1433, 1524, 1946
BsuTUI ATCGAT 1 cut(s) 951
BtgI CCRYGG 2 cut(s) 91, 1695
BtsCI GGATG 2 cut(s) 1300, 2308
BtsI GCAGTG 2 cut(s) 810, 1296
BtsIMutI CAGTG 6 cut(s) 211, 810, 1078, 1196, 1296, 2361
Cac8I GCNNGC 4 cut(s) 226, 1211, 1307, 2380
CaiI CAGNNNCTG 2 cut(s) 210, 1586
CfoI GCGC 4 cut(s) 388, 851, 1540, 2314
Cfr13I GGNCC 4 cut(s) 445, 1051, 1321, 1945
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 2 cut(s) 117, 1009
Csp6I GTAC 7 cut(s) 910, 1279, 1496, 1708, 1802, 1897, 2205
CviQI GTAC 7 cut(s) 910, 1279, 1496, 1708, 1802, 1897, 2205
DdeI CTNAG 6 cut(s) 274, 302, 1252, 1330, 1805, 2439
DpnI GATC 6 cut(s) 83, 1082, 1230, 1397, 1881, 2058
DpnII GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
DraI TTTAAA 2 cut(s) 1576, 1798
DraIII CACNNNGTG 1 cut(s) 343
DriI GACNNNNNGTC 2 cut(s) 368, 1141
Eam1104I CTCTTC 3 cut(s) 792, 1338, 2066
Eam1105I GACNNNNNGTC 2 cut(s) 368, 1141
EarI CTCTTC 3 cut(s) 792, 1338, 2066
Eco130I CCWWGG 4 cut(s) 91, 1414, 1533, 1695
Eco32I GATATC 1 cut(s) 2098
Eco47I GGWCC 3 cut(s) 445, 1051, 1321
Eco57I CTGAAG 4 cut(s) 1172, 1239, 1490, 1665
Eco81I CCTNAGG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 2163
Eco91I GGTNACC 1 cut(s) 838
EcoO65I GGTNACC 1 cut(s) 838
EcoRII CCWGG 3 cut(s) 135, 1524, 1923
EcoRV GATATC 1 cut(s) 2098
EcoT14I CCWWGG 4 cut(s) 91, 1414, 1533, 1695
EcoT22I ATGCAT 3 cut(s) 553, 1383, 1622
ErhI CCWWGG 4 cut(s) 91, 1414, 1533, 1695
FaqI GGGAC 2 cut(s) 786, 1037
FauI CCCGC 1 cut(s) 1697
FauNDI CATATG 1 cut(s) 1362
FbaI TGATCA 1 cut(s) 1395
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 6 cut(s) 73, 97, 141, 237, 1503, 2450
FokI GGATG 2 cut(s) 1307, 2315
Fsp4HI GCNGC 6 cut(s) 73, 97, 141, 237, 1503, 2450
FspBI CTAG 2 cut(s) 648, 846
GlaI GCGC 4 cut(s) 387, 850, 1539, 2313
GluI GCNGC 6 cut(s) 73, 97, 141, 237, 1503, 2450
GsaI CCCAGC 3 cut(s) 837, 1313, 1509
GsuI CTGGAG 2 cut(s) 145, 1950
HaeII RGCGCY 2 cut(s) 852, 1541
HaeIII GGCC 4 cut(s) 898, 1433, 1524, 1946
HapII CCGG 3 cut(s) 340, 899, 2461
HgaI GACGC 2 cut(s) 117, 1009
HhaI GCGC 4 cut(s) 388, 851, 1540, 2314
Hin1I GRCGYC 1 cut(s) 128
Hin6I GCGC 4 cut(s) 386, 849, 1538, 2312
HinP1I GCGC 4 cut(s) 386, 849, 1538, 2312
HincII GTYRAC 2 cut(s) 286, 1983
HindII GTYRAC 2 cut(s) 286, 1983
HindIII AAGCTT 1 cut(s) 1116
HpaI GTTAAC 2 cut(s) 286, 1983
HpaII CCGG 3 cut(s) 340, 899, 2461
HphI GGTGA 5 cut(s) 44, 329, 355, 1838, 1948
Hpy166II GTNNAC 5 cut(s) 286, 373, 445, 1811, 1983
Hpy188I TCNGA 9 cut(s) 178, 190, 262, 487, 539, 612, 1219, 1470, 2517
Hpy8I GTNNAC 5 cut(s) 286, 373, 445, 1811, 1983
HpyAV CCTTC 8 cut(s) 869, 1224, 1441, 1450, 1640, 1817, 2142, 2218
HpyCH4IV ACGT 2 cut(s) 377, 2142
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 146, 548, 721, 863, 968, 1295, 1865, 2375
HpyF3I CTNAG 6 cut(s) 274, 302, 1252, 1330, 1805, 2439
HpySE526I ACGT 2 cut(s) 377, 2142
Hsp92I GRCGYC 1 cut(s) 128
HspAI GCGC 4 cut(s) 386, 849, 1538, 2312
KpnI GGTACC 1 cut(s) 913
Ksp22I TGATCA 1 cut(s) 1395
KspAI GTTAAC 2 cut(s) 286, 1983
Kzo9I GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
LmnI GCTCC 2 cut(s) 924, 1529
Lsp1109I GCAGC 5 cut(s) 84, 152, 223, 1489, 2436
LweI GCATC 5 cut(s) 538, 1285, 2158, 2188, 2293
MaeI CTAG 2 cut(s) 648, 846
MaeII ACGT 2 cut(s) 377, 2142
MaeIII GTNAC 4 cut(s) 838, 1588, 2356, 2413
MalI GATC 6 cut(s) 83, 1082, 1230, 1397, 1881, 2058
MboI GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
MboII GAAGA 8 cut(s) 76, 123, 247, 809, 1178, 1355, 2053, 2198
MflI RGATCY 1 cut(s) 1879
MhlI GDGCHC 1 cut(s) 921
MlyI GAGTC 3 cut(s) 768, 1151, 1577
MmeI TCCRAC 1 cut(s) 408
Mph1103I ATGCAT 3 cut(s) 553, 1383, 1622
MroXI GAANNNNTTC 3 cut(s) 581, 813, 1650
MseI TTAA 9 cut(s) 285, 453, 1112, 1575, 1779, 1797, 1871, 1982, 2154
MslI CAYNNNNRTG 3 cut(s) 177, 2009, 2504
MspA1I CMGCKG 1 cut(s) 1704
MspI CCGG 3 cut(s) 340, 899, 2461
MspR9I CCNGG 5 cut(s) 137, 341, 1526, 1925, 2461
Mva1269I GAATGC 2 cut(s) 48, 2451
MvaI CCWGG 3 cut(s) 137, 1526, 1925
MwoI GCNNNNNNNGC 9 cut(s) 102, 146, 548, 721, 863, 968, 1295, 1865, 2375
NciI CCSGG 2 cut(s) 341, 2461
NcoI CCATGG 2 cut(s) 91, 1695
NdeI CATATG 1 cut(s) 1362
NdeII GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
NlaIV GGNNCC 5 cut(s) 229, 911, 1053, 1531, 1881
NmuCI GTSAC 1 cut(s) 2356
NsiI ATGCAT 3 cut(s) 553, 1383, 1622
NspI RCATGY 2 cut(s) 583, 1213
OliI CACNNNNGTG 1 cut(s) 2504
PaeI GCATGC 1 cut(s) 1213
PaeR7I CTCGAG 1 cut(s) 2163
PciI ACATGT 1 cut(s) 579
PctI GAATGC 2 cut(s) 48, 2451
PdmI GAANNNNTTC 3 cut(s) 581, 813, 1650
PfeI GAWTC 8 cut(s) 182, 431, 1058, 1183, 1961, 2086, 2473, 2487
PkrI GCNGC 6 cut(s) 74, 98, 142, 238, 1504, 2451
PleI GAGTC 3 cut(s) 768, 1150, 1577
PpsI GAGTC 3 cut(s) 768, 1150, 1577
Ppu21I YACGTR 1 cut(s) 378
PscI ACATGT 1 cut(s) 579
PshBI ATTAAT 1 cut(s) 453
PsiI TTATAA 1 cut(s) 966
Psp6I CCWGG 3 cut(s) 135, 1524, 1923
PspEI GGTNACC 1 cut(s) 838
PspFI CCCAGC 3 cut(s) 833, 1309, 1505
PspGI CCWGG 3 cut(s) 135, 1524, 1923
PspN4I GGNNCC 5 cut(s) 229, 911, 1053, 1531, 1881
PspPI GGNCC 4 cut(s) 445, 1051, 1321, 1945
PstNI CAGNNNCTG 2 cut(s) 210, 1586
PsuI RGATCY 1 cut(s) 1879
RsaI GTAC 7 cut(s) 911, 1280, 1497, 1709, 1803, 1898, 2206
RsaNI GTAC 7 cut(s) 910, 1279, 1496, 1708, 1802, 1897, 2205
RseI CAYNNNNRTG 3 cut(s) 177, 2009, 2504
SaqAI TTAA 9 cut(s) 285, 453, 1112, 1575, 1779, 1797, 1871, 1982, 2154
SatI GCNGC 6 cut(s) 73, 97, 141, 237, 1503, 2450
Sau3AI GATC 6 cut(s) 81, 1080, 1228, 1395, 1879, 2056
Sau96I GGNCC 4 cut(s) 445, 1051, 1321, 1945
ScaI AGTACT 1 cut(s) 1803
SchI GAGTC 3 cut(s) 768, 1151, 1577
ScrFI CCNGG 5 cut(s) 137, 341, 1526, 1925, 2461
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 5 cut(s) 538, 1285, 2158, 2188, 2293
SfcI CTRYAG 1 cut(s) 1069
Sfr274I CTCGAG 1 cut(s) 2163
SinI GGWCC 3 cut(s) 445, 1051, 1321
SlaI CTCGAG 1 cut(s) 2163
SmiMI CAYNNNNRTG 3 cut(s) 177, 2009, 2504
SmlI CTYRAG 3 cut(s) 557, 1853, 2163
SmoI CTYRAG 3 cut(s) 557, 1853, 2163
SphI GCATGC 1 cut(s) 1213
SsiI CCGC 7 cut(s) 96, 99, 105, 667, 724, 1223, 1704
SspMI CTAG 2 cut(s) 648, 846
StyD4I CCNGG 5 cut(s) 135, 339, 1524, 1923, 2459
StyI CCWWGG 4 cut(s) 91, 1414, 1533, 1695
TaiI ACGT 2 cut(s) 380, 2145
TaqI TCGA 7 cut(s) 80, 361, 530, 585, 951, 2121, 2164
TatI WGTACW 4 cut(s) 1495, 1801, 1896, 2204
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 8 cut(s) 182, 431, 1058, 1183, 1961, 2086, 2473, 2487
Tru1I TTAA 9 cut(s) 285, 453, 1112, 1575, 1779, 1797, 1871, 1982, 2154
Tru9I TTAA 9 cut(s) 285, 453, 1112, 1575, 1779, 1797, 1871, 1982, 2154
TscAI CASTG 6 cut(s) 211, 810, 1078, 1196, 1296, 2361
TseFI GTSAC 1 cut(s) 2356
TseI GCWGC 5 cut(s) 72, 140, 236, 1502, 2449
Tsp45I GTSAC 1 cut(s) 2356
TspRI CASTG 6 cut(s) 211, 810, 1078, 1196, 1296, 2361
VpaK11BI GGWCC 3 cut(s) 445, 1051, 1321
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 4 cut(s) 396, 473, 1334, 1612
XceI RCATGY 2 cut(s) 583, 1213
XcmI CCANNNNNNNNNTGG 2 cut(s) 98, 929
XhoI CTCGAG 1 cut(s) 2163
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 3 cut(s) 581, 813, 1650
XspI CTAG 2 cut(s) 648, 846
ZrmI AGTACT 1 cut(s) 1803
Zsp2I ATGCAT 3 cut(s) 553, 1383, 1622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.