Rw5G014590

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010003
Physical Location & Seq
Forward (+)
17519191 .. 17523502
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G014590.1

Sequence Viewer

Length: 2580 bp
ATGTGGGTTCCTTCAATTACACTGAGTTTTCCCAGAAAGCTCATTCAATCACCAAGAACTAATCTCAACCATTTTAAGCTCATCAATTGGTTTTCAAGTTTCTCACTTTCTGATGATGATGATGGTTGTTGCACTACAAACACCAACACAAGCACCCAAGAGGTTTATGGTGGTGGGATTGTGTGTGGTTTCAAGTGGGCATCGCCGCAGCAACCGGCTATTGCCCACTGTGATTCAAGGTCTTCAGAGTCTGGTGGTATTAGTTCAGTTACTGACTGCAGAACAGACATTACCAATGCCAAGGGGAACCGTTTGGTTGCGGACTTGGAGACATTGGAGGTTGTTAACAAGCTCAACGGGTTTAAAAGCAAACCCAATTCGGCGCTTTCCTTGTTCCGCCAGTTGAAGGAAGAAGGGTTCCAGCACAATGTTTTGACATACTGTGCGCTTGTAAGGATATTGTGTTATTGGCGTTTGGATAGGAAGATGGATTCTCTGTTCTTGGAGGTTATTAGTGGCGCTAGAGACGTTGGATTTCAATTATCGGATTTGTTGGAAGCGATGGAGGAGGAAATTGAGGTTTCCCCGTCAATAGTTAGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGAGGCTAGTGATGTTTTGTTTCATACCAGAAGGCGTGGATTTGTGCCGCATATCTTTACAGTTAATTTTCTGATGAATCGGTTGATTGAGCATGGTGAAGTGGGTGCGGCTTTGTCTATATACAAGCAGTTGAAGGGGATTGGTTTGGTCCCTAATGATTACACCTATGCAATTGTCCTCAAGGGATTTTGTAAGGAGGGTAGGTTGGAAGAGGCTGGGCAAGTGTTTGAGGAGATGGAGTTAGCTGGGGTAGCCCCTAGCGTGTTTGCCTATACAGCATATATTGAAGGGCTTTGCAACAAGGGGCGTTCTGATGTAGGATGTCAAGTGCTCCAATATTGCAAAAGGGAAAATATCCTTCTTGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAGATGAAATTTGATGAAGCAGAGAGTCTCTTTCTTGACATGGAAATGCAAGGCGTGGTGCCTGATTATTGCATCTATAGTGCAATGATTGGTGGCTACTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTGGTTTTATTCTTCAGTGCCTCTGTAATATTGGAATGCCTTCTGATGCTGTGGATCAATTCATAGAATTTAAGAGCATGGGGATATATCTTGATGAGGTTACCTACAATATTGCGGTTGATGCTTTATGCACACTGCGGAGAGTGGAAGAAGCCTCCGAATTGCTGGAAGAGATGAAGCTTAAGCATATGAGCTTAGATACTATGCATTACACCACATTGATTAAAGGGTACTGTCTCCAAGGGAAAGTTGTTGATGCCGCGAATCTTTTGGAGGAAATGTATGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTTCTAGAAATGGACTGGTATCTAAGGCACTTGGCCTTTTGGTTTATATGGAGGCACAGGGTTTTAAACCGGACTCTGTTACACACAGCATGGTAATTGAGAATCTCTGCATAGGAGGAAAAGTCAAAGAAGCTGAAGCATTTTTAAATAATTTGGTATATAAGAGTGAAGAGACCTACACTGCTCTGATCCGTGGATACTGTGAAGCTAACAATACAAGGAAGGCCTATGAACTTATTTCTAGGCTGGCAAAGCAGGGAGCCATTAACAAAGGTGCTTGCTTTAAGGTAGTCAGTAACCTTTGTATGGAAGGTGATAATGACAGTGCTGTCATGTTGTTTGAGAGAATGTTTGCTTTAAATGTGGAACCTAAGAGAATTATGTACAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGCAAAAGGCCCGCCTGTTTTTTGATTCTTCAGTTGCGAGAGGGTTTACTCCTGATGTCATTGACTACACAGTGATGATAAATAGCTACTGCAGGGGGAATTCTTTGCGGGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTAGATGGATTTTCAAAAAGAAACATAAGGGCTCATTCCCCTCTAGATGCAAGGGCAAATAGGGAAGAAATGGCGGATGATTCTACTATACTTTGGACTGAGATGAAGGAAATGGGAATAAGACCTGATGCCATTTGTTATACTGTTTTGATAGACAGGCATTGTAAAACAGACAACCTTCAGGATGCTATTGCACTCTTTGACTTGATGATTGACAGAGGATTAAAACCTGATACAGTGACGTACACAGCTCTTCTGTCTGGCTATTGTAATAGAAGAGATGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCGTCGAAGGGAATACAGCCAGATGCCTGCACACTGTCAGTTCTACAGCATGGAATCTTAAAAGCCAAAAAAGTGCAGTTTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

859

Amino Acids

96.26

Weight (kDa)

5.75

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 232 - 281 1.9e-10 PPR repeat family
PPR_1 PF12854 264 - 296 6.6e-11 PPR repeat
PPR PF01535 270 - 300 6.4e-06 PPR repeat
PPR_2 PF13041 274 - 316 2.1e-10 PPR repeat family
PPR_2 PF13041 302 - 351 8.3e-08 PPR repeat family
PPR_2 PF13041 372 - 409 1.3e-06 PPR repeat family
PPR PF01535 376 - 405 4.8e-06 PPR repeat
PPR_2 PF13041 414 - 455 2.3e-06 PPR repeat family
PPR_1 PF12854 438 - 471 4.1e-08 PPR repeat
PPR_2 PF13041 443 - 490 1.1e-09 PPR repeat family
PPR_3 PF13812 466 - 520 8.7e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 505 9.5e-09 PPR repeat
PPR_2 PF13041 478 - 525 7e-13 PPR repeat family
PPR_1 PF12854 508 - 541 2.4e-06 PPR repeat
PPR_2 PF13041 514 - 560 1.1e-08 PPR repeat family
PPR_2 PF13041 650 - 696 9.2e-07 PPR repeat family
PPR_3 PF13812 673 - 730 2.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 678 - 711 2.6e-08 PPR repeat
PPR_2 PF13041 682 - 731 1.1e-17 PPR repeat family
PPR_long PF17177 686 - 844 4e-09 Pentacotripeptide-repeat region of PRORP
PPR PF01535 687 - 715 1.9e-07 PPR repeat
PPR_1 PF12854 763 - 795 1.2e-06 PPR repeat
PPR_2 PF13041 767 - 816 2.7e-15 PPR repeat family
PPR_3 PF13812 791 - 845 2.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 798 - 831 2e-11 PPR repeat
PPR_2 PF13041 802 - 848 1e-13 PPR repeat family
PPR PF01535 805 - 835 1.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1898
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 1 cut(s) 1496
AclWI GGATC 2 cut(s) 1296, 1753
AcsI RAATTY 3 cut(s) 1061, 1301, 2092
AcuI CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2339
AfaI GTAC 3 cut(s) 1466, 1955, 2420
AfiI CCNNNNNNNGG 2 cut(s) 406, 1876
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 1201
AjnI CCWGG 1 cut(s) 1980
AloI GAACNNNNNNTCC 4 cut(s) 401, 433, 482, 514
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 6 cut(s) 323, 519, 627, 1085, 1475, 1736
AlwI GGATC 2 cut(s) 1296, 1753
AlwNI CAGNNNCTG 2 cut(s) 251, 272
AoxI GGCC 3 cut(s) 1603, 1794, 2001
ApeKI GCWGC 2 cut(s) 208, 1562
ApoI RAATTY 3 cut(s) 1061, 1301, 2092
Asp700I GAANNNNTTC 1 cut(s) 1273
AspLEI GCGC 3 cut(s) 385, 448, 521
AspS9I GGNCC 2 cut(s) 796, 2002
AsuHPI GGTGA 3 cut(s) 42, 755, 1895
AvaII GGWCC 1 cut(s) 796
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 1 cut(s) 2209
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 220, 1549
BccI CCATC 5 cut(s) 116, 481, 556, 877, 2174
BciT130I CCWGG 1 cut(s) 1982
BciVI GTATCC 1 cut(s) 1760
BcoDI GTCTC 6 cut(s) 323, 519, 627, 1085, 1475, 1736
BfaI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2219, 2477
BfmI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2534
BfoI RGCGCY 2 cut(s) 386, 522
BfrI CTTAAG 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1760
BisI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
BlsI GCNGC 6 cut(s) 207, 210, 696, 757, 1495, 1564
Bme1390I CCNGG 1 cut(s) 1982
Bme18I GGWCC 1 cut(s) 796
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmgT120I GGNCC 2 cut(s) 796, 2002
BmiI GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
BmrFI CCNGG 1 cut(s) 1982
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 2007
BpuEI CTTGAG 1 cut(s) 812
BsaI GGTCTC 1 cut(s) 1736
BsaJI CCNNGG 3 cut(s) 300, 1474, 1762
BsaWI WCCGGW 1 cut(s) 1639
BsaXI ACNNNNNCTCC 8 cut(s) 836, 866, 872, 902, 1499, 1529, 1677, 1707
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1876
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 400, 1590
Bse3DI GCAATG 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 1982
BseDI CCNNGG 3 cut(s) 300, 1474, 1762
BseGI GGATG 3 cut(s) 974, 2257, 2365
BseLI CCNNNNNNNGG 2 cut(s) 406, 1876
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 2 cut(s) 14, 2265
BseNI ACTGG 2 cut(s) 400, 1590
BseRI GAGGAG 2 cut(s) 581, 893
BseXI GCAGC 2 cut(s) 220, 1549
BseYI CCCAGC 2 cut(s) 863, 893
BsgI GTGCAG 1 cut(s) 2503
Bsh1236I CGCG 1 cut(s) 1496
BshFI GGCC 3 cut(s) 1605, 1796, 2003
BshNI GGYRCC 1 cut(s) 1111
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 215, 1640
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 406, 1876
BsmAI GTCTC 6 cut(s) 323, 519, 627, 1085, 1475, 1736
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 1605, 1796, 2003
Bso31I GGTCTC 1 cut(s) 1736
Bsp1286I GDGCHC 2 cut(s) 981, 2209
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 3 cut(s) 1288, 1758, 2113
BspANI GGCC 3 cut(s) 1605, 1796, 2003
BspCNI CTCAG 2 cut(s) 15, 2266
BspFNI CGCG 1 cut(s) 1496
BspLI GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
BspMAI CTGCAG 3 cut(s) 281, 1567, 2087
BspPI GGATC 2 cut(s) 1296, 1753
BspQI GCTCTTC 1 cut(s) 2433
BspT107I GGYRCC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 1 cut(s) 1736
BsrDI GCAATG 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 2 cut(s) 400, 1590
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 300, 1474, 1762
BssMI GATC 3 cut(s) 1288, 1758, 2113
BssT1I CCWWGG 2 cut(s) 300, 1474
Bst2UI CCWGG 1 cut(s) 1982
Bst6I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2433, 2446
BstAFI CTTAAG 1 cut(s) 1415
BstAUI TGTACA 1 cut(s) 1953
BstC8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2518
BstDEI CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2274
BstDSI CCRYGG 1 cut(s) 1762
BstEII GGTNACC 1 cut(s) 1333
BstF5I GGATG 3 cut(s) 974, 2257, 2365
BstFNI CGCG 1 cut(s) 1496
BstH2I RGCGCY 2 cut(s) 386, 522
BstHHI GCGC 3 cut(s) 385, 448, 521
BstKTI GATC 3 cut(s) 1291, 1761, 2116
BstMAI GTCTC 6 cut(s) 323, 519, 627, 1085, 1475, 1736
BstMBI GATC 3 cut(s) 1288, 1758, 2113
BstMWI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
BstNI CCWGG 1 cut(s) 1982
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 1333
BstSCI CCNGG 1 cut(s) 1980
BstSFI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2534
BstUI CGCG 1 cut(s) 1496
BstV1I GCAGC 2 cut(s) 220, 1549
BstV2I GAAGAC 1 cut(s) 234
BsuI GTATCC 1 cut(s) 1760
BsuRI GGCC 3 cut(s) 1605, 1796, 2003
BtgI CCRYGG 1 cut(s) 1762
BtgZI GCGATG 2 cut(s) 186, 575
BtsCI GGATG 3 cut(s) 974, 2257, 2365
BtsI GCAGTG 2 cut(s) 1367, 1749
BtsIMutI CAGTG 9 cut(s) 20, 226, 1256, 1367, 1749, 1900, 2070, 2418, 2522
Cac8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2518
CaiI CAGNNNCTG 2 cut(s) 251, 272
CfoI GCGC 3 cut(s) 385, 448, 521
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 796, 2002
Csp6I GTAC 3 cut(s) 1465, 1954, 2419
CviQI GTAC 3 cut(s) 1465, 1954, 2419
DdeI CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2274
DpnI GATC 3 cut(s) 1290, 1760, 2115
DpnII GATC 3 cut(s) 1288, 1758, 2113
DraI TTTAAA 4 cut(s) 364, 1636, 1716, 1929
DrdI GACNNNNNNGTC 1 cut(s) 1898
DriI GACNNNNNGTC 1 cut(s) 1201
DseDI GACNNNNNNGTC 1 cut(s) 1898
Eam1104I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2433, 2446
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2433, 2446
EciI GGCGGA 2 cut(s) 386, 2264
Eco130I CCWWGG 2 cut(s) 300, 1474
Eco147I AGGCCT 1 cut(s) 1796
Eco24I GRGCYC 1 cut(s) 2209
Eco31I GGTCTC 1 cut(s) 1736
Eco32I GATATC 1 cut(s) 2155
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2339
Eco91I GGTNACC 1 cut(s) 1333
EcoO65I GGTNACC 1 cut(s) 1333
EcoRI GAATTC 1 cut(s) 2092
EcoRII CCWGG 1 cut(s) 1980
EcoRV GATATC 1 cut(s) 2155
EcoT14I CCWWGG 2 cut(s) 300, 1474
EcoT22I ATGCAT 3 cut(s) 613, 1024, 1443
EcoT38I GRGCYC 1 cut(s) 2209
ErhI CCWWGG 2 cut(s) 300, 1474
Esp3I CGTCTC 1 cut(s) 519
FaqI GGGAC 1 cut(s) 782
FauI CCCGC 2 cut(s) 2012, 2094
FauNDI CATATG 1 cut(s) 1422
Fnu4HI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
FokI GGATG 3 cut(s) 981, 2264, 2372
FriOI GRGCYC 1 cut(s) 2209
Fsp4HI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
FspBI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2219, 2477
GlaI GCGC 3 cut(s) 384, 447, 520
GluI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
GsaI CCCAGC 2 cut(s) 867, 897
GsuI CTGGAG 1 cut(s) 2007
HaeII RGCGCY 2 cut(s) 386, 522
HaeIII GGCC 3 cut(s) 1605, 1796, 2003
HapII CCGG 2 cut(s) 215, 1640
HhaI GCGC 3 cut(s) 385, 448, 521
Hin6I GCGC 3 cut(s) 383, 446, 519
HinP1I GCGC 3 cut(s) 383, 446, 519
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 1412
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 215, 1640
HphI GGTGA 3 cut(s) 42, 755, 1895
Hpy166II GTNNAC 3 cut(s) 346, 2040, 2421
Hpy188I TCNGA 9 cut(s) 112, 247, 547, 720, 961, 1279, 1393, 1758, 2574
Hpy188III TCNNGA 7 cut(s) 1010, 1088, 1325, 1575, 2045, 2219, 2357
Hpy8I GTNNAC 3 cut(s) 346, 2040, 2421
Hpy99I CGWCG 1 cut(s) 2497
HpyCH4IV ACGT 2 cut(s) 528, 2417
HpyF10VI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
HpyF3I CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2274
HpySE526I ACGT 2 cut(s) 528, 2417
HspAI GCGC 3 cut(s) 383, 446, 519
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 1288, 1758, 2113
LguI GCTCTTC 1 cut(s) 2433
LmnI GCTCC 2 cut(s) 984, 1829
Lsp1109I GCAGC 2 cut(s) 220, 1549
MaeI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2219, 2477
MaeII ACGT 2 cut(s) 528, 2417
MaeIII GTNAC 6 cut(s) 268, 1333, 1648, 1865, 2413, 2470
MalI GATC 3 cut(s) 1290, 1760, 2115
MboI GATC 3 cut(s) 1288, 1758, 2113
MfeI CAATTG 2 cut(s) 85, 819
MhlI GDGCHC 2 cut(s) 981, 2209
MlyI GAGTC 3 cut(s) 257, 1087, 1637
MmeI TCCRAC 3 cut(s) 511, 534, 834
Mph1103I ATGCAT 3 cut(s) 613, 1024, 1443
MroXI GAANNNNTTC 1 cut(s) 1273
MslI CAYNNNNRTG 2 cut(s) 1097, 2066
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 2 cut(s) 215, 1640
MspR9I CCNGG 1 cut(s) 1982
MunI CAATTG 2 cut(s) 85, 819
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 1982
MvnI CGCG 1 cut(s) 1496
MwoI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
NdeI CATATG 1 cut(s) 1422
NdeII GATC 3 cut(s) 1288, 1758, 2113
NlaIV GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
NmuCI GTSAC 1 cut(s) 2413
NsiI ATGCAT 3 cut(s) 613, 1024, 1443
NspI RCATGY 1 cut(s) 643
PceI AGGCCT 1 cut(s) 1796
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 2433
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 1273
PfeI GAWTC 9 cut(s) 233, 491, 724, 1498, 1672, 2018, 2143, 2255, 2544
PkrI GCNGC 6 cut(s) 207, 210, 696, 757, 1495, 1564
PleI GAGTC 3 cut(s) 256, 1086, 1637
PpsI GAGTC 3 cut(s) 256, 1086, 1637
PscI ACATGT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 1980
PspEI GGTNACC 1 cut(s) 1333
PspFI CCCAGC 2 cut(s) 863, 893
PspGI CCWGG 1 cut(s) 1980
PspN4I GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
PspPI GGNCC 2 cut(s) 796, 2002
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstI CTGCAG 3 cut(s) 281, 1567, 2087
PstNI CAGNNNCTG 2 cut(s) 251, 272
RsaI GTAC 3 cut(s) 1466, 1955, 2420
RsaNI GTAC 3 cut(s) 1465, 1954, 2419
RseI CAYNNNNRTG 2 cut(s) 1097, 2066
SapI GCTCTTC 1 cut(s) 2433
SatI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
Sau3AI GATC 3 cut(s) 1288, 1758, 2113
Sau96I GGNCC 2 cut(s) 796, 2002
SchI GAGTC 3 cut(s) 257, 1087, 1637
ScrFI CCNGG 1 cut(s) 1982
SduI GDGCHC 2 cut(s) 981, 2209
SfcI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2534
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 1097, 2066
SmlI CTYRAG 2 cut(s) 827, 1415
SmoI CTYRAG 2 cut(s) 827, 1415
SseBI AGGCCT 1 cut(s) 1796
SspI AATATT 3 cut(s) 986, 1264, 1345
SspMI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2219, 2477
StuI AGGCCT 1 cut(s) 1796
StyD4I CCNGG 1 cut(s) 1980
StyI CCWWGG 2 cut(s) 300, 1474
TaiI ACGT 2 cut(s) 531, 2420
TaqI TCGA 1 cut(s) 2495
TatI WGTACW 1 cut(s) 1953
TauI GCSGC 4 cut(s) 208, 697, 758, 1496
TfiI GAWTC 9 cut(s) 233, 491, 724, 1498, 1672, 2018, 2143, 2255, 2544
TscAI CASTG 9 cut(s) 27, 233, 1256, 1374, 1756, 1900, 2070, 2418, 2529
TseFI GTSAC 1 cut(s) 2413
TseI GCWGC 2 cut(s) 208, 1562
Tsp45I GTSAC 1 cut(s) 2413
TspDTI ATGAA 9 cut(s) 659, 737, 1073, 1083, 1285, 1424, 1815, 2144, 2294
TspGWI ACGGA 1 cut(s) 1751
TspRI CASTG 9 cut(s) 27, 233, 1256, 1374, 1756, 1900, 2070, 2418, 2529
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 3 cut(s) 1061, 1301, 2092
XbaI TCTAGA 2 cut(s) 1574, 2218
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 1273
XspI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2219, 2477
Zsp2I ATGCAT 3 cut(s) 613, 1024, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.