Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13800 AT1G13800 AT2G26790 AT2G26790 |
| fragaria_vesca | FvH4_3g13690 |
| malus_domestica | MD05G1241200.v1.1 MD10G1219600.v1.1 |
| prunus_persica | Prupe.4G124300_v2.0.a1 |
| pyrus_communis | pycom10g18530 pycom10g18570 |
| rosa_chinensis | RchiOBHm_Chr5g0022931 |
| rosa_laevigata | RLG00000032683 |
| rosa_multiflora | Rmu_sc0000401.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00056410 |
| rosa_rugosa | Rorug05G0075600 Rorug05G0075700 |
| rosa_samantha | Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600 |
| rosa_wichuraiana | Rw5G014590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1898 |
| AccB1I | GGYRCC | 1 cut(s) | 1111 |
| AccII | CGCG | 1 cut(s) | 1496 |
| AclWI | GGATC | 2 cut(s) | 1296, 1753 |
| AcsI | RAATTY | 3 cut(s) | 1061, 1301, 2092 |
| AcuI | CTGAAG | 5 cut(s) | 228, 1232, 1725, 2007, 2339 |
| AfaI | GTAC | 3 cut(s) | 1466, 1955, 2420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 406, 1876 |
| AflII | CTTAAG | 1 cut(s) | 1415 |
| AflIII | ACRYGT | 1 cut(s) | 639 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1201 |
| AjnI | CCWGG | 1 cut(s) | 1980 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 401, 433, 482, 514 |
| Alw21I | GWGCWC | 1 cut(s) | 981 |
| Alw26I | GTCTC | 6 cut(s) | 323, 519, 627, 1085, 1475, 1736 |
| AlwI | GGATC | 2 cut(s) | 1296, 1753 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 251, 272, 1646 |
| AoxI | GGCC | 3 cut(s) | 1603, 1794, 2001 |
| ApeKI | GCWGC | 2 cut(s) | 208, 1562 |
| ApoI | RAATTY | 3 cut(s) | 1061, 1301, 2092 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1273 |
| AspLEI | GCGC | 3 cut(s) | 385, 448, 521 |
| AspS9I | GGNCC | 2 cut(s) | 796, 2002 |
| AsuHPI | GGTGA | 3 cut(s) | 42, 755, 1895 |
| AvaII | GGWCC | 1 cut(s) | 796 |
| BanI | GGYRCC | 1 cut(s) | 1111 |
| BanII | GRGCYC | 1 cut(s) | 2209 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 981 |
| BbvI | GCAGC | 2 cut(s) | 220, 1549 |
| BccI | CCATC | 4 cut(s) | 116, 556, 877, 2174 |
| BciT130I | CCWGG | 1 cut(s) | 1982 |
| BciVI | GTATCC | 1 cut(s) | 1760 |
| BcoDI | GTCTC | 6 cut(s) | 323, 519, 627, 1085, 1475, 1736 |
| BfaI | CTAG | 8 cut(s) | 522, 654, 906, 1575, 1812, 2177, 2219, 2477 |
| BfmI | CTRYAG | 5 cut(s) | 277, 1129, 1563, 2083, 2534 |
| BfoI | RGCGCY | 2 cut(s) | 386, 522 |
| BfrI | CTTAAG | 1 cut(s) | 1415 |
| BfuI | GTATCC | 1 cut(s) | 1760 |
| BisI | GCNGC | 6 cut(s) | 206, 209, 695, 756, 1494, 1563 |
| BlsI | GCNGC | 6 cut(s) | 207, 210, 696, 757, 1495, 1564 |
| Bme1390I | CCNGG | 1 cut(s) | 1982 |
| Bme18I | GGWCC | 1 cut(s) | 796 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1201 |
| BmgT120I | GGNCC | 2 cut(s) | 796, 2002 |
| BmiI | GGNNCC | 7 cut(s) | 9, 308, 419, 798, 1113, 1831, 1938 |
| BmrFI | CCNGG | 1 cut(s) | 1982 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 1 cut(s) | 812 |
| BsaI | GGTCTC | 1 cut(s) | 1736 |
| BsaJI | CCNNGG | 3 cut(s) | 300, 1474, 1762 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 836, 866, 872, 902, 1499, 1529, 1677, 1707 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 406, 1876 |
| Bse118I | RCCGGY | 1 cut(s) | 214 |
| Bse1I | ACTGG | 2 cut(s) | 400, 1590 |
| Bse3DI | GCAATG | 1 cut(s) | 1143 |
| BseBI | CCWGG | 1 cut(s) | 1982 |
| BseDI | CCNNGG | 3 cut(s) | 300, 1474, 1762 |
| BseGI | GGATG | 4 cut(s) | 974, 1387, 2257, 2365 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 406, 1876 |
| BseMI | GCAATG | 1 cut(s) | 1143 |
| BseMII | CTCAG | 2 cut(s) | 14, 2265 |
| BseNI | ACTGG | 2 cut(s) | 400, 1590 |
| BseRI | GAGGAG | 2 cut(s) | 581, 893 |
| BseXI | GCAGC | 2 cut(s) | 220, 1549 |
| BseYI | CCCAGC | 2 cut(s) | 863, 893 |
| BsgI | GTGCAG | 1 cut(s) | 2503 |
| Bsh1236I | CGCG | 1 cut(s) | 1496 |
| BshFI | GGCC | 3 cut(s) | 1605, 1796, 2003 |
| BshNI | GGYRCC | 1 cut(s) | 1111 |
| BsiHKAI | GWGCWC | 1 cut(s) | 981 |
| BsiSI | CCGG | 1 cut(s) | 215 |
| BslFI | GGGAC | 1 cut(s) | 782 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 406, 1876 |
| BsmAI | GTCTC | 6 cut(s) | 323, 519, 627, 1085, 1475, 1736 |
| BsmBI | CGTCTC | 1 cut(s) | 519 |
| BsmFI | GGGAC | 1 cut(s) | 782 |
| BsmI | GAATGC | 1 cut(s) | 1275 |
| BsnI | GGCC | 3 cut(s) | 1605, 1796, 2003 |
| Bso31I | GGTCTC | 1 cut(s) | 1736 |
| Bsp1286I | GDGCHC | 2 cut(s) | 981, 2209 |
| Bsp1407I | TGTACA | 1 cut(s) | 1953 |
| Bsp143I | GATC | 3 cut(s) | 1288, 1758, 2113 |
| BspANI | GGCC | 3 cut(s) | 1605, 1796, 2003 |
| BspCNI | CTCAG | 2 cut(s) | 15, 2266 |
| BspFNI | CGCG | 1 cut(s) | 1496 |
| BspLI | GGNNCC | 7 cut(s) | 9, 308, 419, 798, 1113, 1831, 1938 |
| BspMAI | CTGCAG | 3 cut(s) | 281, 1567, 2087 |
| BspPI | GGATC | 2 cut(s) | 1296, 1753 |
| BspQI | GCTCTTC | 1 cut(s) | 2433 |
| BspT107I | GGYRCC | 1 cut(s) | 1111 |
| BspTI | CTTAAG | 1 cut(s) | 1415 |
| BspTNI | GGTCTC | 1 cut(s) | 1736 |
| BsrDI | GCAATG | 1 cut(s) | 1143 |
| BsrFI | RCCGGY | 1 cut(s) | 214 |
| BsrGI | TGTACA | 1 cut(s) | 1953 |
| BsrI | ACTGG | 2 cut(s) | 400, 1590 |
| BssAI | RCCGGY | 1 cut(s) | 214 |
| BssECI | CCNNGG | 3 cut(s) | 300, 1474, 1762 |
| BssMI | GATC | 3 cut(s) | 1288, 1758, 2113 |
| BssT1I | CCWWGG | 2 cut(s) | 300, 1474 |
| Bst2UI | CCWGG | 1 cut(s) | 1982 |
| Bst6I | CTCTTC | 6 cut(s) | 852, 1398, 1734, 2123, 2433, 2446 |
| BstAFI | CTTAAG | 1 cut(s) | 1415 |
| BstAUI | TGTACA | 1 cut(s) | 1953 |
| BstC8I | GCNNGC | 4 cut(s) | 1818, 1849, 2005, 2518 |
| BstDEI | CTNAG | 5 cut(s) | 23, 1429, 1593, 1941, 2274 |
| BstDSI | CCRYGG | 1 cut(s) | 1762 |
| BstEII | GGTNACC | 1 cut(s) | 1333 |
| BstF5I | GGATG | 4 cut(s) | 974, 1387, 2257, 2365 |
| BstFNI | CGCG | 1 cut(s) | 1496 |
| BstH2I | RGCGCY | 2 cut(s) | 386, 522 |
| BstHHI | GCGC | 3 cut(s) | 385, 448, 521 |
| BstKTI | GATC | 3 cut(s) | 1291, 1761, 2116 |
| BstMAI | GTCTC | 6 cut(s) | 323, 519, 627, 1085, 1475, 1736 |
| BstMBI | GATC | 3 cut(s) | 1288, 1758, 2113 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 899, 923, 1355, 1822 |
| BstNI | CCWGG | 1 cut(s) | 1982 |
| BstNSI | RCATGY | 1 cut(s) | 643 |
| BstPI | GGTNACC | 1 cut(s) | 1333 |
| BstSCI | CCNGG | 1 cut(s) | 1980 |
| BstSFI | CTRYAG | 5 cut(s) | 277, 1129, 1563, 2083, 2534 |
| BstUI | CGCG | 1 cut(s) | 1496 |
| BstV1I | GCAGC | 2 cut(s) | 220, 1549 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 1760 |
| BsuRI | GGCC | 3 cut(s) | 1605, 1796, 2003 |
| BtgI | CCRYGG | 1 cut(s) | 1762 |
| BtgZI | GCGATG | 2 cut(s) | 186, 575 |
| BtsCI | GGATG | 4 cut(s) | 974, 1387, 2257, 2365 |
| BtsI | GCAGTG | 2 cut(s) | 1367, 1749 |
| BtsIMutI | CAGTG | 9 cut(s) | 20, 226, 1256, 1367, 1749, 1900, 2070, 2418, 2522 |
| Cac8I | GCNNGC | 4 cut(s) | 1818, 1849, 2005, 2518 |
| CaiI | CAGNNNCTG | 3 cut(s) | 251, 272, 1646 |
| CfoI | GCGC | 3 cut(s) | 385, 448, 521 |
| Cfr10I | RCCGGY | 1 cut(s) | 214 |
| Cfr13I | GGNCC | 2 cut(s) | 796, 2002 |
| CseI | GACGC | 1 cut(s) | 2231 |
| Csp6I | GTAC | 3 cut(s) | 1465, 1954, 2419 |
| CviQI | GTAC | 3 cut(s) | 1465, 1954, 2419 |
| DdeI | CTNAG | 5 cut(s) | 23, 1429, 1593, 1941, 2274 |
| DpnI | GATC | 3 cut(s) | 1290, 1760, 2115 |
| DpnII | GATC | 3 cut(s) | 1288, 1758, 2113 |
| DraI | TTTAAA | 4 cut(s) | 364, 1636, 1716, 1929 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1898 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1201 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1898 |
| Eam1104I | CTCTTC | 6 cut(s) | 852, 1398, 1734, 2123, 2433, 2446 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1201 |
| EarI | CTCTTC | 6 cut(s) | 852, 1398, 1734, 2123, 2433, 2446 |
| EciI | GGCGGA | 2 cut(s) | 386, 2264 |
| Eco130I | CCWWGG | 2 cut(s) | 300, 1474 |
| Eco147I | AGGCCT | 1 cut(s) | 1796 |
| Eco24I | GRGCYC | 1 cut(s) | 2209 |
| Eco31I | GGTCTC | 1 cut(s) | 1736 |
| Eco32I | GATATC | 1 cut(s) | 2155 |
| Eco47I | GGWCC | 1 cut(s) | 796 |
| Eco57I | CTGAAG | 5 cut(s) | 228, 1232, 1725, 2007, 2339 |
| Eco91I | GGTNACC | 1 cut(s) | 1333 |
| EcoO65I | GGTNACC | 1 cut(s) | 1333 |
| EcoRI | GAATTC | 1 cut(s) | 2092 |
| EcoRII | CCWGG | 1 cut(s) | 1980 |
| EcoRV | GATATC | 1 cut(s) | 2155 |
| EcoT14I | CCWWGG | 2 cut(s) | 300, 1474 |
| EcoT22I | ATGCAT | 3 cut(s) | 613, 1024, 1443 |
| EcoT38I | GRGCYC | 1 cut(s) | 2209 |
| ErhI | CCWWGG | 2 cut(s) | 300, 1474 |
| Esp3I | CGTCTC | 1 cut(s) | 519 |
| FaqI | GGGAC | 1 cut(s) | 782 |
| FauI | CCCGC | 2 cut(s) | 2012, 2094 |
| FauNDI | CATATG | 1 cut(s) | 1422 |
| Fnu4HI | GCNGC | 6 cut(s) | 206, 209, 695, 756, 1494, 1563 |
| FokI | GGATG | 4 cut(s) | 981, 1394, 2264, 2372 |
| FriOI | GRGCYC | 1 cut(s) | 2209 |
| Fsp4HI | GCNGC | 6 cut(s) | 206, 209, 695, 756, 1494, 1563 |
| FspBI | CTAG | 8 cut(s) | 522, 654, 906, 1575, 1812, 2177, 2219, 2477 |
| GlaI | GCGC | 3 cut(s) | 384, 447, 520 |
| GluI | GCNGC | 6 cut(s) | 206, 209, 695, 756, 1494, 1563 |
| GsaI | CCCAGC | 2 cut(s) | 867, 897 |
| HaeII | RGCGCY | 2 cut(s) | 386, 522 |
| HaeIII | GGCC | 3 cut(s) | 1605, 1796, 2003 |
| HapII | CCGG | 1 cut(s) | 215 |
| HgaI | GACGC | 1 cut(s) | 2231 |
| HhaI | GCGC | 3 cut(s) | 385, 448, 521 |
| Hin6I | GCGC | 3 cut(s) | 383, 446, 519 |
| HinP1I | GCGC | 3 cut(s) | 383, 446, 519 |
| HincII | GTYRAC | 1 cut(s) | 346 |
| HindII | GTYRAC | 1 cut(s) | 346 |
| HindIII | AAGCTT | 1 cut(s) | 1412 |
| HpaI | GTTAAC | 1 cut(s) | 346 |
| HpaII | CCGG | 1 cut(s) | 215 |
| HphI | GGTGA | 3 cut(s) | 42, 755, 1895 |
| Hpy166II | GTNNAC | 3 cut(s) | 346, 2040, 2421 |
| Hpy188III | TCNNGA | 7 cut(s) | 1010, 1088, 1325, 1575, 2045, 2219, 2357 |
| Hpy8I | GTNNAC | 3 cut(s) | 346, 2040, 2421 |
| Hpy99I | CGWCG | 1 cut(s) | 2497 |
| HpyCH4IV | ACGT | 2 cut(s) | 528, 2417 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 899, 923, 1355, 1822 |
| HpyF3I | CTNAG | 5 cut(s) | 23, 1429, 1593, 1941, 2274 |
| HpySE526I | ACGT | 2 cut(s) | 528, 2417 |
| HspAI | GCGC | 3 cut(s) | 383, 446, 519 |
| KspAI | GTTAAC | 1 cut(s) | 346 |
| Kzo9I | GATC | 3 cut(s) | 1288, 1758, 2113 |
| LguI | GCTCTTC | 1 cut(s) | 2433 |
| LmnI | GCTCC | 2 cut(s) | 984, 1829 |
| Lsp1109I | GCAGC | 2 cut(s) | 220, 1549 |
| MaeI | CTAG | 8 cut(s) | 522, 654, 906, 1575, 1812, 2177, 2219, 2477 |
| MaeII | ACGT | 2 cut(s) | 528, 2417 |
| MaeIII | GTNAC | 6 cut(s) | 268, 1333, 1648, 1865, 2413, 2470 |
| MalI | GATC | 3 cut(s) | 1290, 1760, 2115 |
| MboI | GATC | 3 cut(s) | 1288, 1758, 2113 |
| MfeI | CAATTG | 2 cut(s) | 85, 819 |
| MhlI | GDGCHC | 2 cut(s) | 981, 2209 |
| MlyI | GAGTC | 3 cut(s) | 257, 1087, 1637 |
| MmeI | TCCRAC | 3 cut(s) | 511, 534, 834 |
| Mph1103I | ATGCAT | 3 cut(s) | 613, 1024, 1443 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1273 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1097, 2066 |
| MspCI | CTTAAG | 1 cut(s) | 1415 |
| MspI | CCGG | 1 cut(s) | 215 |
| MspR9I | CCNGG | 1 cut(s) | 1982 |
| MunI | CAATTG | 2 cut(s) | 85, 819 |
| Mva1269I | GAATGC | 1 cut(s) | 1275 |
| MvaI | CCWGG | 1 cut(s) | 1982 |
| MvnI | CGCG | 1 cut(s) | 1496 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 899, 923, 1355, 1822 |
| NdeI | CATATG | 1 cut(s) | 1422 |
| NdeII | GATC | 3 cut(s) | 1288, 1758, 2113 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 308, 419, 798, 1113, 1831, 1938 |
| NmuCI | GTSAC | 1 cut(s) | 2413 |
| NsiI | ATGCAT | 3 cut(s) | 613, 1024, 1443 |
| NspI | RCATGY | 1 cut(s) | 643 |
| PceI | AGGCCT | 1 cut(s) | 1796 |
| PciI | ACATGT | 1 cut(s) | 639 |
| PciSI | GCTCTTC | 1 cut(s) | 2433 |
| PctI | GAATGC | 1 cut(s) | 1275 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1273 |
| PkrI | GCNGC | 6 cut(s) | 207, 210, 696, 757, 1495, 1564 |
| PleI | GAGTC | 3 cut(s) | 256, 1086, 1637 |
| PpsI | GAGTC | 3 cut(s) | 256, 1086, 1637 |
| PscI | ACATGT | 1 cut(s) | 639 |
| Psp6I | CCWGG | 1 cut(s) | 1980 |
| PspEI | GGTNACC | 1 cut(s) | 1333 |
| PspFI | CCCAGC | 2 cut(s) | 863, 893 |
| PspGI | CCWGG | 1 cut(s) | 1980 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 308, 419, 798, 1113, 1831, 1938 |
| PspPI | GGNCC | 2 cut(s) | 796, 2002 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 274, 306 |
| PstI | CTGCAG | 3 cut(s) | 281, 1567, 2087 |
| PstNI | CAGNNNCTG | 3 cut(s) | 251, 272, 1646 |
| RsaI | GTAC | 3 cut(s) | 1466, 1955, 2420 |
| RsaNI | GTAC | 3 cut(s) | 1465, 1954, 2419 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1097, 2066 |
| SapI | GCTCTTC | 1 cut(s) | 2433 |
| SatI | GCNGC | 6 cut(s) | 206, 209, 695, 756, 1494, 1563 |
| Sau3AI | GATC | 3 cut(s) | 1288, 1758, 2113 |
| Sau96I | GGNCC | 2 cut(s) | 796, 2002 |
| SchI | GAGTC | 3 cut(s) | 257, 1087, 1637 |
| ScrFI | CCNGG | 1 cut(s) | 1982 |
| SduI | GDGCHC | 2 cut(s) | 981, 2209 |
| SfcI | CTRYAG | 5 cut(s) | 277, 1129, 1563, 2083, 2534 |
| SinI | GGWCC | 1 cut(s) | 796 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1097, 2066 |
| SmlI | CTYRAG | 2 cut(s) | 827, 1415 |
| SmoI | CTYRAG | 2 cut(s) | 827, 1415 |
| SseBI | AGGCCT | 1 cut(s) | 1796 |
| SspI | AATATT | 3 cut(s) | 986, 1264, 1345 |
| SspMI | CTAG | 8 cut(s) | 522, 654, 906, 1575, 1812, 2177, 2219, 2477 |
| StuI | AGGCCT | 1 cut(s) | 1796 |
| StyD4I | CCNGG | 1 cut(s) | 1980 |
| StyI | CCWWGG | 2 cut(s) | 300, 1474 |
| TaiI | ACGT | 2 cut(s) | 531, 2420 |
| TaqI | TCGA | 1 cut(s) | 2495 |
| TatI | WGTACW | 1 cut(s) | 1953 |
| TauI | GCSGC | 4 cut(s) | 208, 697, 758, 1496 |
| TscAI | CASTG | 9 cut(s) | 27, 233, 1256, 1374, 1756, 1900, 2070, 2418, 2529 |
| TseFI | GTSAC | 1 cut(s) | 2413 |
| TseI | GCWGC | 2 cut(s) | 208, 1562 |
| Tsp45I | GTSAC | 1 cut(s) | 2413 |
| TspDTI | ATGAA | 9 cut(s) | 737, 1073, 1083, 1285, 1398, 1424, 1815, 2144, 2294 |
| TspGWI | ACGGA | 1 cut(s) | 1751 |
| TspRI | CASTG | 9 cut(s) | 27, 233, 1256, 1374, 1756, 1900, 2070, 2418, 2529 |
| Vha464I | CTTAAG | 1 cut(s) | 1415 |
| VpaK11BI | GGWCC | 1 cut(s) | 796 |
| XapI | RAATTY | 3 cut(s) | 1061, 1301, 2092 |
| XbaI | TCTAGA | 2 cut(s) | 1574, 2218 |
| XceI | RCATGY | 1 cut(s) | 643 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1273 |
| XspI | CTAG | 8 cut(s) | 522, 654, 906, 1575, 1812, 2177, 2219, 2477 |
| Zsp2I | ATGCAT | 3 cut(s) | 613, 1024, 1443 |