Rorug05G0075600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010003
Physical Location & Seq
Reverse (-)
6505275 .. 6507912
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0075600.1

Sequence Viewer

Length: 1110 bp
ATGTATCTTACTGTACTGTCGAGTGTGAATGTTGGTTGGGTTTTGGTAATTTTGATATTGAACTGGTTGGTTGTGTGTGCAATGTGCAGTGATCCTGGGCAATCAAAGACTGCATTTGTTACGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGGAAGTAAGATTGGTGGAAAGTGCTATTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGCTAAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATTGGTTGAGAGAAAGTGCATCTGAGAAAGAAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGACAGTAGGCCTTTCTATGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGTAGGCTTGCTTCACTCTGTATTATTTATGCAACACAAAGTTACATGTGTGTATCCACCCTCTAATAATCAACCGTGCTACAAATTTCAGAGAGCTATTTTTTGTTTGTTAGTTTGGAAGAATGTGCTAGCTGTCATTATTTTCTTTGAAATTGAGAACTCCCCTTGTTTTCTTACTAGAGTTTTATACAAGTTGAAATTGTTAAGTTTGGGTATTGATTTTGGTGGTTCAGTTTTCAGCAATTGTTATTTGACACTGCCACAAAGAAAGTGTCTTCCTAATATGCTCTGTGACATTGCCAAGCTTGTTGAGACTGGCCAGGAAGCTACAGCTTGGATTCGGGCAATTTCTCTTTTTTCATTGGGGTTAATTTACTCGCACAGTATCGAGAACAAGTTCTTAGTTTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

369

Amino Acids

40.52

Weight (kDa)

9.35

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 561, 632
AclWI GGATC 2 cut(s) 86, 559
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 1 cut(s) 779
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 2 cut(s) 15, 646
AfiI CCNNNNNNNGG 2 cut(s) 254, 451
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 6 cut(s) 61, 127, 146, 601, 845, 892
AhdI GACNNNNNGTC 1 cut(s) 491
AjnI CCWGG 2 cut(s) 94, 1014
AluBI AGCT 9 cut(s) 140, 278, 557, 593, 791, 827, 1000, 1022, 1028
AluI AGCT 9 cut(s) 140, 278, 557, 593, 791, 827, 1000, 1022, 1028
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 499, 1001
AlwI GGATC 2 cut(s) 86, 559
AoxI GGCC 2 cut(s) 442, 1012
ApeKI GCWGC 5 cut(s) 197, 512, 524, 590, 638
ApoI RAATTY 1 cut(s) 779
ArsI GACNNNNNNTTYG 2 cut(s) 952, 984
Asp700I GAANNNNTTC 1 cut(s) 1091
AsuHPI GGTGA 1 cut(s) 210
AsuNHI GCTAGC 1 cut(s) 823
BalI TGGCCA 1 cut(s) 1014
BanII GRGCYC 2 cut(s) 280, 423
BarI GAAGNNNNNNTAC 2 cut(s) 690, 722
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 5 cut(s) 184, 524, 536, 602, 625
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 96, 1016
BciVI GTATCC 1 cut(s) 759
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 499, 1001
BfaI CTAG 3 cut(s) 294, 824, 873
BfmI CTRYAG 2 cut(s) 639, 1023
BfuAI ACCTGC 2 cut(s) 561, 632
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 5 cut(s) 198, 513, 525, 591, 639
BlsI GCNGC 5 cut(s) 199, 514, 526, 592, 640
Bme1390I CCNGG 2 cut(s) 96, 1016
BmeRI GACNNNNNGTC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 96, 1016
BmsI GCATC 3 cut(s) 121, 319, 392
BmtI GCTAGC 1 cut(s) 827
BpiI GAAGAC 1 cut(s) 962
BplI GAGNNNNNCTC 2 cut(s) 405, 437
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 451
Bse1I ACTGG 3 cut(s) 68, 553, 1015
Bse3DI GCAATG 2 cut(s) 87, 990
BseBI CCWGG 2 cut(s) 96, 1016
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 254, 451
BseMI GCAATG 2 cut(s) 87, 990
BseMII CTCAG 2 cut(s) 378, 510
BseNI ACTGG 3 cut(s) 68, 553, 1015
BseXI GCAGC 5 cut(s) 184, 524, 536, 602, 625
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 2 cut(s) 444, 1014
BsiHKAI GWGCWC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 254, 451
BsmAI GTCTC 2 cut(s) 499, 1001
BsnI GGCC 2 cut(s) 444, 1014
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 280, 423
Bsp143I GATC 3 cut(s) 91, 478, 551
BspANI GGCC 2 cut(s) 444, 1014
BspCNI CTCAG 2 cut(s) 379, 509
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 2 cut(s) 561, 632
BspOI GCTAGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 86, 559
BspTNI GGTCTC 1 cut(s) 499
BsrDI GCAATG 2 cut(s) 87, 990
BsrI ACTGG 3 cut(s) 68, 553, 1015
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 3 cut(s) 91, 478, 551
Bst2UI CCWGG 2 cut(s) 96, 1016
Bst4CI ACNGT 6 cut(s) 13, 18, 439, 583, 771, 1079
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 636, 704, 825
BstDEI CTNAG 4 cut(s) 228, 387, 496, 1096
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 3 cut(s) 94, 481, 554
BstMAI GTCTC 2 cut(s) 499, 1001
BstMBI GATC 3 cut(s) 91, 478, 551
BstMWI GCNNNNNNNGC 4 cut(s) 194, 203, 521, 635
BstNI CCWGG 2 cut(s) 96, 1016
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 2 cut(s) 94, 1014
BstSFI CTRYAG 2 cut(s) 639, 1023
BstV1I GCAGC 5 cut(s) 184, 524, 536, 602, 625
BstV2I GAAGAC 1 cut(s) 962
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 2 cut(s) 444, 1014
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 2 cut(s) 94, 950
BtsIMutI CAGTG 2 cut(s) 94, 950
BveI ACCTGC 2 cut(s) 561, 632
Cac8I GCNNGC 3 cut(s) 636, 704, 825
Csp6I GTAC 2 cut(s) 14, 645
CviAII CATG 1 cut(s) 741
CviQI GTAC 2 cut(s) 14, 645
DdeI CTNAG 4 cut(s) 228, 387, 496, 1096
DpnI GATC 3 cut(s) 93, 480, 553
DpnII GATC 3 cut(s) 91, 478, 551
DriI GACNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 1012
Eam1105I GACNNNNNGTC 1 cut(s) 491
Ecl136II GAGCTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 444
Eco24I GRGCYC 2 cut(s) 280, 423
Eco31I GGTCTC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 94, 1014
EcoT38I GRGCYC 2 cut(s) 280, 423
FaeI CATG 1 cut(s) 744
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FatI CATG 1 cut(s) 740
FauNDI CATATG 1 cut(s) 669
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 198, 513, 525, 591, 639
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 2 cut(s) 280, 423
Fsp4HI GCNGC 5 cut(s) 198, 513, 525, 591, 639
FspBI CTAG 3 cut(s) 294, 824, 873
GluI GCNGC 5 cut(s) 198, 513, 525, 591, 639
HaeIII GGCC 2 cut(s) 444, 1014
Hin1II CATG 1 cut(s) 744
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 1 cut(s) 1033
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 337, 457
Hpy188I TCNGA 4 cut(s) 166, 388, 499, 786
Hpy188III TCNNGA 3 cut(s) 143, 281, 1084
Hpy8I GTNNAC 2 cut(s) 337, 457
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 6 cut(s) 13, 18, 439, 583, 771, 1079
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 9 cut(s) 80, 87, 113, 305, 383, 524, 641, 692, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 203, 521, 635
HpyF3I CTNAG 4 cut(s) 228, 387, 496, 1096
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 478
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 3 cut(s) 91, 478, 551
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 5 cut(s) 184, 524, 536, 602, 625
LweI GCATC 3 cut(s) 121, 319, 392
MaeI CTAG 3 cut(s) 294, 824, 873
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 4 cut(s) 118, 577, 736, 986
MalI GATC 3 cut(s) 93, 480, 553
MboI GATC 3 cut(s) 91, 478, 551
MboII GAAGA 2 cut(s) 826, 962
MfeI CAATTG 2 cut(s) 318, 937
MhlI GDGCHC 2 cut(s) 280, 423
MlsI TGGCCA 1 cut(s) 1014
MluNI TGGCCA 1 cut(s) 1014
MnlI CCTC 1 cut(s) 766
Mox20I TGGCCA 1 cut(s) 1014
MroXI GAANNNNTTC 1 cut(s) 1091
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 4 cut(s) 456, 539, 899, 1064
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 96, 1016
MunI CAATTG 2 cut(s) 318, 937
MvaI CCWGG 2 cut(s) 96, 1016
MwoI GCNNNNNNNGC 4 cut(s) 194, 203, 521, 635
NdeI CATATG 1 cut(s) 669
NdeII GATC 3 cut(s) 91, 478, 551
NheI GCTAGC 1 cut(s) 823
NlaIII CATG 1 cut(s) 744
NmuCI GTSAC 2 cut(s) 577, 986
NspI RCATGY 1 cut(s) 744
PceI AGGCCT 1 cut(s) 444
PciI ACATGT 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 1 cut(s) 1033
PkrI GCNGC 5 cut(s) 199, 514, 526, 592, 640
PscI ACATGT 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 94, 1014
PspGI CCWGG 2 cut(s) 94, 1014
PstI CTGCAG 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 15, 646
RsaNI GTAC 2 cut(s) 14, 645
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 4 cut(s) 456, 539, 899, 1064
SatI GCNGC 5 cut(s) 198, 513, 525, 591, 639
Sau3AI GATC 3 cut(s) 91, 478, 551
ScrFI CCNGG 2 cut(s) 96, 1016
SduI GDGCHC 2 cut(s) 280, 423
SfaNI GCATC 3 cut(s) 121, 319, 392
SfcI CTRYAG 2 cut(s) 639, 1023
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SseBI AGGCCT 1 cut(s) 444
SspI AATATT 1 cut(s) 519
SspMI CTAG 3 cut(s) 294, 824, 873
SstI GAGCTC 1 cut(s) 280
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 94, 1014
TaaI ACNGT 6 cut(s) 13, 18, 439, 583, 771, 1079
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 20, 1083
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 1033
Tru1I TTAA 4 cut(s) 456, 539, 899, 1064
Tru9I TTAA 4 cut(s) 456, 539, 899, 1064
TscAI CASTG 2 cut(s) 94, 957
TseFI GTSAC 2 cut(s) 577, 986
TseI GCWGC 5 cut(s) 197, 512, 524, 590, 638
Tsp45I GTSAC 2 cut(s) 577, 986
TspDTI ATGAA 2 cut(s) 372, 1044
TspRI CASTG 2 cut(s) 94, 957
XapI RAATTY 1 cut(s) 779
XceI RCATGY 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 3 cut(s) 294, 824, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.