Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13800 AT1G13800 AT2G26790 AT2G26790 |
| fragaria_vesca | FvH4_3g13690 |
| malus_domestica | MD05G1241200.v1.1 MD10G1219600.v1.1 |
| prunus_persica | Prupe.4G124300_v2.0.a1 |
| pyrus_communis | pycom10g18530 pycom10g18570 |
| rosa_chinensis | RchiOBHm_Chr5g0022931 |
| rosa_laevigata | RLG00000032683 |
| rosa_multiflora | Rmu_sc0000401.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00056410 |
| rosa_rugosa | Rorug05G0075600 Rorug05G0075700 |
| rosa_samantha | Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600 |
| rosa_wichuraiana | Rw5G014590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 500, 629, 661, 2038 |
| AclWI | GGATC | 1 cut(s) | 1259 |
| AcsI | RAATTY | 3 cut(s) | 390, 995, 1606 |
| AcuI | CTGAAG | 7 cut(s) | 477, 1166, 1233, 1391, 1548, 1659, 2276 |
| AcyI | GRCGYC | 1 cut(s) | 125 |
| AfaI | GTAC | 4 cut(s) | 1491, 1703, 1797, 1892 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 340, 526, 2143 |
| AflIII | ACRYGT | 2 cut(s) | 573, 804 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1135 |
| AhlI | ACTAGT | 1 cut(s) | 641 |
| AjiI | CACGTC | 1 cut(s) | 805 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 770, 802 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 145, 177 |
| Alw21I | GWGCWC | 2 cut(s) | 455, 915 |
| AlwI | GGATC | 1 cut(s) | 1259 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1580 |
| AoxI | GGCC | 3 cut(s) | 585, 1860, 1938 |
| ApeKI | GCWGC | 1 cut(s) | 1496 |
| ApoI | RAATTY | 3 cut(s) | 390, 995, 1606 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2195 |
| AspLEI | GCGC | 2 cut(s) | 845, 2165 |
| AspS9I | GGNCC | 4 cut(s) | 439, 1045, 1315, 1939 |
| AsuHPI | GGTGA | 4 cut(s) | 361, 1832, 1942, 2038 |
| AvaII | GGWCC | 3 cut(s) | 439, 1045, 1315 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1947, 1980 |
| BanII | GRGCYC | 2 cut(s) | 455, 734 |
| BauI | CACGAG | 1 cut(s) | 400 |
| BbsI | GAAGAC | 5 cut(s) | 120, 358, 465, 1397, 2421 |
| Bbv12I | GWGCWC | 2 cut(s) | 455, 915 |
| BbvI | GCAGC | 1 cut(s) | 1483 |
| BccI | CCATC | 5 cut(s) | 341, 520, 596, 811, 1192 |
| BceAI | ACGGC | 2 cut(s) | 153, 1412 |
| BciVI | GTATCC | 2 cut(s) | 1076, 1711 |
| BclI | TGATCA | 1 cut(s) | 1692 |
| BcuI | ACTAGT | 1 cut(s) | 641 |
| BfaI | CTAG | 7 cut(s) | 102, 642, 840, 1509, 1847, 1878, 2159 |
| BfmI | CTRYAG | 1 cut(s) | 2020 |
| BfoI | RGCGCY | 1 cut(s) | 846 |
| BfuI | GTATCC | 2 cut(s) | 1076, 1711 |
| BisI | GCNGC | 2 cut(s) | 629, 1497 |
| BlsI | GCNGC | 2 cut(s) | 630, 1498 |
| BmcAI | AGTACT | 1 cut(s) | 1797 |
| Bme18I | GGWCC | 3 cut(s) | 439, 1045, 1315 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1135 |
| BmgBI | CACGTC | 1 cut(s) | 805 |
| BmgT120I | GGNCC | 4 cut(s) | 439, 1045, 1315, 1939 |
| BmiI | GGNNCC | 2 cut(s) | 1047, 1875 |
| BmrI | ACTGGG | 1 cut(s) | 38 |
| BmsI | GCATC | 5 cut(s) | 226, 532, 1023, 1279, 2287 |
| BmuI | ACTGGG | 1 cut(s) | 38 |
| BpiI | GAAGAC | 5 cut(s) | 120, 358, 465, 1397, 2421 |
| BpmI | CTGGAG | 1 cut(s) | 1944 |
| BpuEI | CTTGAG | 1 cut(s) | 536 |
| Bsa29I | ATCGAT | 1 cut(s) | 591 |
| BsaBI | GATNNNNATC | 1 cut(s) | 86 |
| BsaHI | GRCGYC | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 2 cut(s) | 463, 1713 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 140, 170, 206, 236, 1611, 1641 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 340, 526, 2143 |
| Bse1I | ACTGG | 3 cut(s) | 33, 155, 334 |
| Bse3DI | GCAATG | 3 cut(s) | 495, 545, 931 |
| Bse8I | GATNNNNATC | 1 cut(s) | 86 |
| BseCI | ATCGAT | 1 cut(s) | 591 |
| BseDI | CCNNGG | 2 cut(s) | 463, 1713 |
| BseGI | GGATG | 4 cut(s) | 164, 1294, 2193, 2302 |
| BseJI | GATNNNNATC | 1 cut(s) | 86 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 340, 526, 2143 |
| BseMI | GCAATG | 3 cut(s) | 495, 545, 931 |
| BseMII | CTCAG | 2 cut(s) | 1813, 2202 |
| BseNI | ACTGG | 3 cut(s) | 33, 155, 334 |
| BseXI | GCAGC | 1 cut(s) | 1483 |
| BseYI | CCCAGC | 3 cut(s) | 827, 1303, 1499 |
| BshFI | GGCC | 3 cut(s) | 587, 1862, 1940 |
| BshVI | ATCGAT | 1 cut(s) | 591 |
| BsiHKAI | GWGCWC | 2 cut(s) | 455, 915 |
| BslFI | GGGAC | 2 cut(s) | 780, 1031 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 340, 526, 2143 |
| BsmFI | GGGAC | 2 cut(s) | 780, 1031 |
| BsmI | GAATGC | 2 cut(s) | 48, 2197 |
| BsnI | GGCC | 3 cut(s) | 587, 1862, 1940 |
| Bsp1286I | GDGCHC | 3 cut(s) | 455, 734, 915 |
| Bsp1407I | TGTACA | 1 cut(s) | 1890 |
| Bsp143I | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| BspACI | CCGC | 4 cut(s) | 500, 629, 661, 2038 |
| BspANI | GGCC | 3 cut(s) | 587, 1862, 1940 |
| BspCNI | CTCAG | 2 cut(s) | 1812, 2203 |
| BspDI | ATCGAT | 1 cut(s) | 591 |
| BspLI | GGNNCC | 2 cut(s) | 1047, 1875 |
| BspMAI | CTGCAG | 1 cut(s) | 2024 |
| BspPI | GGATC | 1 cut(s) | 1259 |
| BspQI | GCTCTTC | 1 cut(s) | 2370 |
| BsrDI | GCAATG | 3 cut(s) | 495, 545, 931 |
| BsrGI | TGTACA | 1 cut(s) | 1890 |
| BsrI | ACTGG | 3 cut(s) | 33, 155, 334 |
| BssECI | CCNNGG | 2 cut(s) | 463, 1713 |
| BssMI | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| BssNI | GRCGYC | 1 cut(s) | 125 |
| BssSI | CACGAG | 1 cut(s) | 400 |
| BssT1I | CCWWGG | 2 cut(s) | 463, 1713 |
| Bst2BI | CACGAG | 1 cut(s) | 400 |
| Bst4CI | ACNGT | 8 cut(s) | 293, 967, 1403, 1706, 2107, 2257, 2274, 2350 |
| Bst6I | CTCTTC | 5 cut(s) | 437, 786, 1332, 2060, 2370 |
| BstACI | GRCGYC | 1 cut(s) | 125 |
| BstAUI | TGTACA | 1 cut(s) | 1890 |
| BstC8I | GCNNGC | 4 cut(s) | 205, 922, 1205, 1301 |
| BstDEI | CTNAG | 6 cut(s) | 1324, 1363, 1799, 2138, 2211, 2433 |
| BstEII | GGTNACC | 1 cut(s) | 832 |
| BstF5I | GGATG | 4 cut(s) | 164, 1294, 2193, 2302 |
| BstH2I | RGCGCY | 1 cut(s) | 846 |
| BstHHI | GCGC | 2 cut(s) | 845, 2165 |
| BstKTI | GATC | 4 cut(s) | 1254, 1362, 1695, 2053 |
| BstMBI | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 542, 857, 1095, 1289 |
| BstNSI | RCATGY | 5 cut(s) | 577, 635, 924, 1192, 1207 |
| BstPI | GGTNACC | 1 cut(s) | 832 |
| BstSFI | CTRYAG | 1 cut(s) | 2020 |
| BstV1I | GCAGC | 1 cut(s) | 1483 |
| BstV2I | GAAGAC | 5 cut(s) | 120, 358, 465, 1397, 2421 |
| BstX2I | RGATCY | 1 cut(s) | 1251 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 1251 |
| Bsu15I | ATCGAT | 1 cut(s) | 591 |
| BsuI | GTATCC | 2 cut(s) | 1076, 1711 |
| BsuRI | GGCC | 3 cut(s) | 587, 1862, 1940 |
| BsuTUI | ATCGAT | 1 cut(s) | 591 |
| BtrI | CACGTC | 1 cut(s) | 805 |
| BtsCI | GGATG | 4 cut(s) | 164, 1294, 2193, 2302 |
| BtsIMutI | CAGTG | 5 cut(s) | 148, 1190, 1702, 2279, 2355 |
| Cac8I | GCNNGC | 4 cut(s) | 205, 922, 1205, 1301 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1580 |
| CfoI | GCGC | 2 cut(s) | 845, 2165 |
| Cfr13I | GGNCC | 4 cut(s) | 439, 1045, 1315, 1939 |
| ClaI | ATCGAT | 1 cut(s) | 591 |
| CseI | GACGC | 1 cut(s) | 114 |
| Csp6I | GTAC | 4 cut(s) | 1490, 1702, 1796, 1891 |
| CviQI | GTAC | 4 cut(s) | 1490, 1702, 1796, 1891 |
| DdeI | CTNAG | 6 cut(s) | 1324, 1363, 1799, 2138, 2211, 2433 |
| DpnI | GATC | 4 cut(s) | 1253, 1361, 1694, 2052 |
| DpnII | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| DraI | TTTAAA | 2 cut(s) | 1570, 1792 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1135 |
| Eam1104I | CTCTTC | 5 cut(s) | 437, 786, 1332, 2060, 2370 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1135 |
| EarI | CTCTTC | 5 cut(s) | 437, 786, 1332, 2060, 2370 |
| Ecl136II | GAGCTC | 1 cut(s) | 453 |
| Eco130I | CCWWGG | 2 cut(s) | 463, 1713 |
| Eco24I | GRGCYC | 2 cut(s) | 455, 734 |
| Eco32I | GATATC | 2 cut(s) | 905, 2092 |
| Eco47I | GGWCC | 3 cut(s) | 439, 1045, 1315 |
| Eco53kI | GAGCTC | 1 cut(s) | 453 |
| Eco57I | CTGAAG | 7 cut(s) | 477, 1166, 1233, 1391, 1548, 1659, 2276 |
| Eco91I | GGTNACC | 1 cut(s) | 832 |
| EcoICRI | GAGCTC | 1 cut(s) | 453 |
| EcoO65I | GGTNACC | 1 cut(s) | 832 |
| EcoRV | GATATC | 2 cut(s) | 905, 2092 |
| EcoT14I | CCWWGG | 2 cut(s) | 463, 1713 |
| EcoT22I | ATGCAT | 1 cut(s) | 547 |
| EcoT38I | GRGCYC | 2 cut(s) | 455, 734 |
| ErhI | CCWWGG | 2 cut(s) | 463, 1713 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1082, 1114 |
| FaqI | GGGAC | 2 cut(s) | 780, 1031 |
| FauI | CCCGC | 1 cut(s) | 2031 |
| FauNDI | CATATG | 2 cut(s) | 1063, 1356 |
| FbaI | TGATCA | 1 cut(s) | 1692 |
| Fnu4HI | GCNGC | 2 cut(s) | 629, 1497 |
| FokI | GGATG | 4 cut(s) | 151, 1301, 2200, 2309 |
| FriOI | GRGCYC | 2 cut(s) | 455, 734 |
| Fsp4HI | GCNGC | 2 cut(s) | 629, 1497 |
| FspBI | CTAG | 7 cut(s) | 102, 642, 840, 1509, 1847, 1878, 2159 |
| GlaI | GCGC | 2 cut(s) | 844, 2164 |
| GluI | GCNGC | 2 cut(s) | 629, 1497 |
| GsaI | CCCAGC | 3 cut(s) | 831, 1307, 1503 |
| GsuI | CTGGAG | 1 cut(s) | 1944 |
| HaeII | RGCGCY | 1 cut(s) | 846 |
| HaeIII | GGCC | 3 cut(s) | 587, 1862, 1940 |
| HgaI | GACGC | 1 cut(s) | 114 |
| HhaI | GCGC | 2 cut(s) | 845, 2165 |
| Hin1I | GRCGYC | 1 cut(s) | 125 |
| Hin6I | GCGC | 2 cut(s) | 843, 2163 |
| HinP1I | GCGC | 2 cut(s) | 843, 2163 |
| HindIII | AAGCTT | 1 cut(s) | 1110 |
| HinfI | GANTC | 9 cut(s) | 179, 1052, 1093, 1556, 1577, 1850, 1974, 2080, 2481 |
| HphI | GGTGA | 4 cut(s) | 361, 1832, 1942, 2038 |
| Hpy166II | GTNNAC | 3 cut(s) | 802, 1315, 2149 |
| Hpy188I | TCNGA | 8 cut(s) | 175, 184, 235, 457, 481, 895, 1213, 2511 |
| Hpy188III | TCNNGA | 7 cut(s) | 812, 1022, 1259, 1509, 1982, 2260, 2294 |
| Hpy8I | GTNNAC | 3 cut(s) | 802, 1315, 2149 |
| Hpy99I | CGWCG | 1 cut(s) | 526 |
| HpyCH4III | ACNGT | 8 cut(s) | 293, 967, 1403, 1706, 2107, 2257, 2274, 2350 |
| HpyCH4IV | ACGT | 1 cut(s) | 804 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 542, 857, 1095, 1289 |
| HpyF3I | CTNAG | 6 cut(s) | 1324, 1363, 1799, 2138, 2211, 2433 |
| HpySE526I | ACGT | 1 cut(s) | 804 |
| Hsp92I | GRCGYC | 1 cut(s) | 125 |
| HspAI | GCGC | 2 cut(s) | 843, 2163 |
| Ksp22I | TGATCA | 1 cut(s) | 1692 |
| Kzo9I | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| LguI | GCTCTTC | 1 cut(s) | 2370 |
| LmnI | GCTCC | 2 cut(s) | 918, 1523 |
| Lsp1109I | GCAGC | 1 cut(s) | 1483 |
| LweI | GCATC | 5 cut(s) | 226, 532, 1023, 1279, 2287 |
| MaeI | CTAG | 7 cut(s) | 102, 642, 840, 1509, 1847, 1878, 2159 |
| MaeII | ACGT | 1 cut(s) | 804 |
| MaeIII | GTNAC | 7 cut(s) | 196, 832, 1557, 1582, 1802, 2350, 2407 |
| MalI | GATC | 4 cut(s) | 1253, 1361, 1694, 2052 |
| MboI | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| MfeI | CAATTG | 1 cut(s) | 753 |
| MflI | RGATCY | 1 cut(s) | 1251 |
| MhlI | GDGCHC | 3 cut(s) | 455, 734, 915 |
| MlyI | GAGTC | 3 cut(s) | 1565, 1571, 1859 |
| MmeI | TCCRAC | 3 cut(s) | 379, 468, 873 |
| Mph1103I | ATGCAT | 1 cut(s) | 547 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2195 |
| MslI | CAYNNNNRTG | 1 cut(s) | 945 |
| MunI | CAATTG | 1 cut(s) | 753 |
| Mva1269I | GAATGC | 2 cut(s) | 48, 2197 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 542, 857, 1095, 1289 |
| NdeI | CATATG | 2 cut(s) | 1063, 1356 |
| NdeII | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| NlaIV | GGNNCC | 2 cut(s) | 1047, 1875 |
| NmuCI | GTSAC | 2 cut(s) | 1557, 2350 |
| NsiI | ATGCAT | 1 cut(s) | 547 |
| NspI | RCATGY | 5 cut(s) | 577, 635, 924, 1192, 1207 |
| PaeI | GCATGC | 2 cut(s) | 924, 1207 |
| PciI | ACATGT | 1 cut(s) | 573 |
| PciSI | GCTCTTC | 1 cut(s) | 2370 |
| PctI | GAATGC | 2 cut(s) | 48, 2197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2195 |
| PfeI | GAWTC | 6 cut(s) | 179, 1052, 1093, 1974, 2080, 2481 |
| PkrI | GCNGC | 2 cut(s) | 630, 1498 |
| PleI | GAGTC | 3 cut(s) | 1564, 1571, 1858 |
| PpsI | GAGTC | 3 cut(s) | 1564, 1571, 1858 |
| PscI | ACATGT | 1 cut(s) | 573 |
| Psp124BI | GAGCTC | 1 cut(s) | 455 |
| PspEI | GGTNACC | 1 cut(s) | 832 |
| PspFI | CCCAGC | 3 cut(s) | 827, 1303, 1499 |
| PspN4I | GGNNCC | 2 cut(s) | 1047, 1875 |
| PspPI | GGNCC | 4 cut(s) | 439, 1045, 1315, 1939 |
| PstI | CTGCAG | 1 cut(s) | 2024 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1580 |
| PsuI | RGATCY | 1 cut(s) | 1251 |
| RsaI | GTAC | 4 cut(s) | 1491, 1703, 1797, 1892 |
| RsaNI | GTAC | 4 cut(s) | 1490, 1702, 1796, 1891 |
| RseI | CAYNNNNRTG | 1 cut(s) | 945 |
| SacI | GAGCTC | 1 cut(s) | 455 |
| SapI | GCTCTTC | 1 cut(s) | 2370 |
| SatI | GCNGC | 2 cut(s) | 629, 1497 |
| Sau3AI | GATC | 4 cut(s) | 1251, 1359, 1692, 2050 |
| Sau96I | GGNCC | 4 cut(s) | 439, 1045, 1315, 1939 |
| ScaI | AGTACT | 1 cut(s) | 1797 |
| SchI | GAGTC | 3 cut(s) | 1565, 1571, 1859 |
| SduI | GDGCHC | 3 cut(s) | 455, 734, 915 |
| SfaNI | GCATC | 5 cut(s) | 226, 532, 1023, 1279, 2287 |
| SfcI | CTRYAG | 1 cut(s) | 2020 |
| SinI | GGWCC | 3 cut(s) | 439, 1045, 1315 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 945 |
| SmlI | CTYRAG | 1 cut(s) | 551 |
| SmoI | CTYRAG | 1 cut(s) | 551 |
| SpeI | ACTAGT | 1 cut(s) | 641 |
| SphI | GCATGC | 2 cut(s) | 924, 1207 |
| SsiI | CCGC | 4 cut(s) | 500, 629, 661, 2038 |
| SspMI | CTAG | 7 cut(s) | 102, 642, 840, 1509, 1847, 1878, 2159 |
| SstI | GAGCTC | 1 cut(s) | 455 |
| StyI | CCWWGG | 2 cut(s) | 463, 1713 |
| TaaI | ACNGT | 8 cut(s) | 293, 967, 1403, 1706, 2107, 2257, 2274, 2350 |
| TaiI | ACGT | 1 cut(s) | 807 |
| TaqI | TCGA | 4 cut(s) | 524, 532, 591, 1139 |
| TatI | WGTACW | 3 cut(s) | 1489, 1795, 1890 |
| TauI | GCSGC | 1 cut(s) | 631 |
| TfiI | GAWTC | 6 cut(s) | 179, 1052, 1093, 1974, 2080, 2481 |
| TscAI | CASTG | 5 cut(s) | 155, 1190, 1702, 2279, 2355 |
| TseFI | GTSAC | 2 cut(s) | 1557, 2350 |
| TseI | GCWGC | 1 cut(s) | 1496 |
| Tsp45I | GTSAC | 2 cut(s) | 1557, 2350 |
| TspGWI | ACGGA | 1 cut(s) | 733 |
| TspRI | CASTG | 5 cut(s) | 155, 1190, 1702, 2279, 2355 |
| VpaK11BI | GGWCC | 3 cut(s) | 439, 1045, 1315 |
| XapI | RAATTY | 3 cut(s) | 390, 995, 1606 |
| XbaI | TCTAGA | 1 cut(s) | 1508 |
| XceI | RCATGY | 5 cut(s) | 577, 635, 924, 1192, 1207 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 923 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2195 |
| XspI | CTAG | 7 cut(s) | 102, 642, 840, 1509, 1847, 1878, 2159 |
| ZrmI | AGTACT | 1 cut(s) | 1797 |
| Zsp2I | ATGCAT | 1 cut(s) | 547 |