RchiOBHm_Chr5g0022931

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010003
Physical Location & Seq
Forward (+)
16942640 .. 16946951
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30284

Sequence Viewer

Length: 2583 bp
ATGTGGGTTCCTTCAATTACACTGAGTTTTCCCAGAAAGCTCATTCAATCACCAAGAACTAATCTCAACCATTTTAAGCTCATCAATTGGTTTTCAAGTTTCTCACTTTCTGATGATGATGATGATTGTTGCACTACAAACACCAACACAAGCACCCAAGAGGTTTATGGTGGTGGGATTGTGTGTGGTTTCAAGTGGGCATCGCCGCAGCAACCGGCTATTGCCCCCTGTGATTCAAGGTCTTCAGAGTCTGGTGGTATTAGTTCGGTTACTGATTGCAGAACAGACATTACCAATGCCAAGGGGAACCGTTTGGTTGCGGACTTGGAGACATTGGAGGTTGTTAACAAGCTCAACGGGTTTAAAAGCAAACCCAATTCGGCGCTTTCCTTGTTCCGCCAGTTGAAGGAAGAAGGGTTCCAGCACAATGTTTTGACATACTGTGCGCTTGTAAGGATATTGTGTTATTGGCGTTTGGATAGGAAGCTGGATTCTCTGTTCTTGGAGGTTATTAGTGGTGCTAGAGACGTTGGATTTCGATTATCGGATTTGTTGGAAGCGATGGAGGAGGAAATTGAGGTTTCCCCGTCAATAGTTCGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGAGGCTAGTGACGTTTTGTTCCATACCAGAAGGCGTGGATTTGTGCCGCATATCTTTACAGTTAATTTTCTGATGAATCGGTTGATTGAGCATGGTGAAGTGGGTGCGGCTTTGTCTATATACAAGCAGTTGAAGGGGATTGGTTTGGTCCCTAATGATTACACCTATGCAATTGTTCTCAAGGGATTTTGTAAGGAGGGTAGGTTGGAAGAGGCTGGGGAAGTGTTTGAGGAGATGGAGTTAGCTGGGGTAGCCCCTAGCGTGTTTGCCTATACAGCATATATTGAAGGGCTTTGCAACAAGGGGCGTTCTGATGTAGGATGTCAAGTGCTCGAATATTGCAAAAGGGAAAATATCCTTCTCGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAAATGAAATTTGATGAAGCAGAGAGTCTCTTTCTTGACATGGAAATGCAAGGCGTGGTGCCTGATTCTTGCATCTATAGTGCAATGATCAGTGGCTATTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTGGTTTTATTCTTCAGTGCCTCTGTAAGATTGGAATGCCTTCTGATGCTGTGGATCAATTCATAGAATTTAAGAGCATGGGGATATATCTTGATGAGGTTACCTACAATATTGCGGTTGATGCTTTATGCACACTGCGGAGAGTGGAAGAAGCCTCCGAATTGCTGGAAGAGATGAAGCTTAAGCATATGAGCTTAGATGCTATGCATTACACCACATTGATTAAAGGGTACTGTCTCCAAGGGAAAGTTGTTGATGCCGCGAATCTTTTGGAGGAAATGTATGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTTCTAGAAATGGACTGGTATCTAAGGCGCTTGGCCTTTTGGTTTATATGGAGGCACAGGGTTTTAAACCGGACTCTGTTACACACAGCATGGTAATTGAGAATCTCTGCATAGGAGGAAAAGTCAAAGAAGCTGAAGCATTTTTAAATAATTTGGTAGATAAGAGTGAAGAGACCTACACTGCTCTGATCCGTGGATACTGTGAAGCTAACAATACAAGGAAGGCCTATGAACTTATTTCTAGGCTGGCAAAGCAGGGAGCCATTAACAAAGGTGCTTGCTTTAAGGTAGTCAGTAACCTTTGTATGGAAGGTGATAATGACAGTGCTATCTTGTTGTATGAGAGAATGTTCGCCTTAAATGTGGAACCTAAGAGAATTATGTACAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGACGTGCAAAAGGCCCGCCTGTTTTTTGATTCTTCAGTTGCGAGAGGGTTTACTCCTGATGTCATTGACTACACAGTGATGATAAATAGCTACTGCAGGGGGAATTCTTTGCGGGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTAGATGGATTTTCGAAAAGAAACATAAGAAGGGTTCGTTCCCCTCTAGATGCAAGGGGAAATAGGGAAGAAATGGCGGATGCTTCTACTATACTTTGGACTGAGATGAAGGAAATGGGAATAAGACCTGATGCCATTTGTTATACTGTTTTGATAGACAGGCATTGTAAAACAGACAACCTTCAGGATGCTATTGCACTCTTTGACTTAATGGTTGACAGAGGATTAAAACCTGATACAGTGACGTACACAGCTCTTCTGTCTGGCTGTTGTAATAGAAGAGATGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCTTCGAAGGGAATCCAGCCAGATGCCTGCACACTGTCGGTTCTACAGCATGGAATCTTAAAAGCCAAAAAAGTGCAGTTTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

860

Amino Acids

96.25

Weight (kDa)

5.74

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 232 - 281 1.9e-10 PPR repeat family
PPR_1 PF12854 264 - 296 4.9e-11 PPR repeat
PPR PF01535 270 - 300 2.5e-06 PPR repeat
PPR_2 PF13041 274 - 316 2.2e-10 PPR repeat family
PPR_2 PF13041 302 - 351 4.9e-08 PPR repeat family
PPR_1 PF12854 369 - 401 6.7e-07 PPR repeat
PPR_2 PF13041 372 - 409 1.9e-07 PPR repeat family
PPR PF01535 376 - 405 1.2e-06 PPR repeat
PPR_2 PF13041 414 - 455 8.2e-07 PPR repeat family
PPR_1 PF12854 438 - 471 4.1e-08 PPR repeat
PPR_2 PF13041 443 - 490 7.9e-10 PPR repeat family
PPR_3 PF13812 466 - 520 9.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 505 1.3e-08 PPR repeat
PPR_2 PF13041 478 - 525 1.3e-12 PPR repeat family
PPR_1 PF12854 508 - 541 2.4e-06 PPR repeat
PPR_2 PF13041 512 - 560 3.3e-10 PPR repeat family
PPR_2 PF13041 650 - 696 6.1e-07 PPR repeat family
PPR_3 PF13812 673 - 730 2.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 678 - 711 2.6e-08 PPR repeat
PPR_2 PF13041 682 - 731 1.1e-17 PPR repeat family
PPR_long PF17177 686 - 846 1.1e-07 Pentacotripeptide-repeat region of PRORP
PPR PF01535 687 - 715 1.9e-07 PPR repeat
PPR_1 PF12854 764 - 797 8.5e-07 PPR repeat
PPR_2 PF13041 768 - 817 3.4e-16 PPR repeat family
PPR_3 PF13812 792 - 846 3.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 799 - 832 1.2e-10 PPR repeat
PPR_2 PF13041 803 - 849 3.3e-13 PPR repeat family
PPR PF01535 806 - 836 2.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1111
AccII CGCG 1 cut(s) 1496
AclWI GGATC 2 cut(s) 1296, 1753
AcsI RAATTY 3 cut(s) 1061, 1301, 2092
AcuI CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2342
AfaI GTAC 3 cut(s) 1466, 1955, 2423
AfiI CCNNNNNNNGG 2 cut(s) 406, 1876
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 1201
AjiI CACGTC 1 cut(s) 1993
AjnI CCWGG 1 cut(s) 1980
AloI GAACNNNNNNTCC 4 cut(s) 401, 433, 482, 514
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 1983
AlwI GGATC 2 cut(s) 1296, 1753
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 3 cut(s) 1603, 1794, 2001
ApeKI GCWGC 2 cut(s) 208, 1562
ApoI RAATTY 3 cut(s) 1061, 1301, 2092
Asp700I GAANNNNTTC 1 cut(s) 1273
AspLEI GCGC 3 cut(s) 385, 448, 1600
AspS9I GGNCC 2 cut(s) 796, 2002
AsuHPI GGTGA 3 cut(s) 42, 755, 1895
AsuII TTCGAA 2 cut(s) 2189, 2498
AvaII GGWCC 1 cut(s) 796
BanI GGYRCC 1 cut(s) 1111
BbsI GAAGAC 2 cut(s) 234, 2487
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 220, 1549
BccI CCATC 3 cut(s) 556, 877, 2174
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BciT130I CCWGG 1 cut(s) 1982
BciVI GTATCC 1 cut(s) 1760
BclI TGATCA 1 cut(s) 1140
BcoDI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 1983
BfaI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2222, 2480
BfmI CTRYAG 4 cut(s) 1129, 1563, 2083, 2537
BfoI RGCGCY 2 cut(s) 386, 1601
BfrI CTTAAG 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1760
BisI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
BlsI GCNGC 6 cut(s) 207, 210, 696, 757, 1495, 1564
Bme1390I CCNGG 1 cut(s) 1982
Bme18I GGWCC 1 cut(s) 796
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmgBI CACGTC 1 cut(s) 1993
BmgT120I GGNCC 2 cut(s) 796, 2002
BmiI GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
BmrFI CCNGG 1 cut(s) 1982
BpiI GAAGAC 2 cut(s) 234, 2487
BpmI CTGGAG 1 cut(s) 2007
Bpu14I TTCGAA 2 cut(s) 2189, 2498
BpuEI CTTGAG 1 cut(s) 812
BsaI GGTCTC 1 cut(s) 1736
BsaJI CCNNGG 3 cut(s) 300, 1474, 1762
BsaWI WCCGGW 1 cut(s) 1639
BsaXI ACNNNNNCTCC 8 cut(s) 836, 866, 872, 902, 1499, 1529, 1677, 1707
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1876
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 400, 1590
Bse3DI GCAATG 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 1982
BseDI CCNNGG 3 cut(s) 300, 1474, 1762
BseGI GGATG 3 cut(s) 974, 2260, 2368
BseLI CCNNNNNNNGG 2 cut(s) 406, 1876
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 2 cut(s) 14, 2268
BseNI ACTGG 2 cut(s) 400, 1590
BseRI GAGGAG 2 cut(s) 581, 893
BseXI GCAGC 2 cut(s) 220, 1549
BseYI CCCAGC 2 cut(s) 863, 893
BsgI GTGCAG 1 cut(s) 2506
Bsh1236I CGCG 1 cut(s) 1496
BshFI GGCC 3 cut(s) 1605, 1796, 2003
BshNI GGYRCC 1 cut(s) 1111
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 215, 1640
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 406, 1876
BsmAI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 1983
BsmBI CGTCTC 2 cut(s) 519, 1983
BsmFI GGGAC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 1605, 1796, 2003
Bso31I GGTCTC 1 cut(s) 1736
Bsp119I TTCGAA 2 cut(s) 2189, 2498
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 4 cut(s) 1140, 1288, 1758, 2113
BspANI GGCC 3 cut(s) 1605, 1796, 2003
BspCNI CTCAG 2 cut(s) 15, 2269
BspFNI CGCG 1 cut(s) 1496
BspLI GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
BspMAI CTGCAG 2 cut(s) 1567, 2087
BspPI GGATC 2 cut(s) 1296, 1753
BspQI GCTCTTC 1 cut(s) 2436
BspT104I TTCGAA 2 cut(s) 2189, 2498
BspT107I GGYRCC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 1 cut(s) 1736
BsrDI GCAATG 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 2 cut(s) 400, 1590
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 300, 1474, 1762
BssMI GATC 4 cut(s) 1140, 1288, 1758, 2113
BssT1I CCWWGG 2 cut(s) 300, 1474
Bst2UI CCWGG 1 cut(s) 1982
Bst6I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
BstAFI CTTAAG 1 cut(s) 1415
BstAUI TGTACA 1 cut(s) 1953
BstBI TTCGAA 2 cut(s) 2189, 2498
BstC8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2521
BstDEI CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2277
BstDSI CCRYGG 1 cut(s) 1762
BstEII GGTNACC 1 cut(s) 1333
BstF5I GGATG 3 cut(s) 974, 2260, 2368
BstFNI CGCG 1 cut(s) 1496
BstH2I RGCGCY 2 cut(s) 386, 1601
BstHHI GCGC 3 cut(s) 385, 448, 1600
BstKTI GATC 4 cut(s) 1143, 1291, 1761, 2116
BstMAI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 1983
BstMBI GATC 4 cut(s) 1140, 1288, 1758, 2113
BstMWI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
BstNI CCWGG 1 cut(s) 1982
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 1333
BstSCI CCNGG 1 cut(s) 1980
BstSFI CTRYAG 4 cut(s) 1129, 1563, 2083, 2537
BstUI CGCG 1 cut(s) 1496
BstV1I GCAGC 2 cut(s) 220, 1549
BstV2I GAAGAC 2 cut(s) 234, 2487
BsuI GTATCC 1 cut(s) 1760
BsuRI GGCC 3 cut(s) 1605, 1796, 2003
BtgI CCRYGG 1 cut(s) 1762
BtgZI GCGATG 2 cut(s) 186, 575
BtrI CACGTC 1 cut(s) 1993
BtsCI GGATG 3 cut(s) 974, 2260, 2368
BtsI GCAGTG 2 cut(s) 1367, 1749
BtsIMutI CAGTG 9 cut(s) 20, 1150, 1256, 1367, 1749, 1900, 2070, 2421, 2525
Cac8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2521
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 3 cut(s) 385, 448, 1600
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 796, 2002
Csp6I GTAC 3 cut(s) 1465, 1954, 2422
CviAII CATG 9 cut(s) 640, 740, 1093, 1198, 1312, 1660, 2111, 2123, 2543
CviQI GTAC 3 cut(s) 1465, 1954, 2422
DdeI CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2277
DpnI GATC 4 cut(s) 1142, 1290, 1760, 2115
DpnII GATC 4 cut(s) 1140, 1288, 1758, 2113
DraI TTTAAA 3 cut(s) 364, 1636, 1716
DriI GACNNNNNGTC 1 cut(s) 1201
Eam1104I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
EciI GGCGGA 2 cut(s) 386, 2267
Eco130I CCWWGG 2 cut(s) 300, 1474
Eco147I AGGCCT 1 cut(s) 1796
Eco31I GGTCTC 1 cut(s) 1736
Eco32I GATATC 1 cut(s) 2155
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2342
Eco91I GGTNACC 1 cut(s) 1333
EcoO65I GGTNACC 1 cut(s) 1333
EcoRI GAATTC 1 cut(s) 2092
EcoRII CCWGG 1 cut(s) 1980
EcoRV GATATC 1 cut(s) 2155
EcoT14I CCWWGG 2 cut(s) 300, 1474
EcoT22I ATGCAT 3 cut(s) 613, 1024, 1443
ErhI CCWWGG 2 cut(s) 300, 1474
Esp3I CGTCTC 2 cut(s) 519, 1983
FaeI CATG 9 cut(s) 643, 743, 1096, 1201, 1315, 1663, 2114, 2126, 2546
FaqI GGGAC 1 cut(s) 782
FatI CATG 9 cut(s) 639, 739, 1092, 1197, 1311, 1659, 2110, 2122, 2542
FauI CCCGC 2 cut(s) 2012, 2094
FauNDI CATATG 1 cut(s) 1422
FbaI TGATCA 1 cut(s) 1140
Fnu4HI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
FokI GGATG 3 cut(s) 981, 2267, 2375
Fsp4HI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
FspBI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2222, 2480
GlaI GCGC 3 cut(s) 384, 447, 1599
GluI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
GsaI CCCAGC 2 cut(s) 867, 897
GsuI CTGGAG 1 cut(s) 2007
HaeII RGCGCY 2 cut(s) 386, 1601
HaeIII GGCC 3 cut(s) 1605, 1796, 2003
HapII CCGG 2 cut(s) 215, 1640
HhaI GCGC 3 cut(s) 385, 448, 1600
Hin1II CATG 9 cut(s) 643, 743, 1096, 1201, 1315, 1663, 2114, 2126, 2546
Hin6I GCGC 3 cut(s) 383, 446, 1598
HinP1I GCGC 3 cut(s) 383, 446, 1598
HincII GTYRAC 2 cut(s) 346, 2392
HindII GTYRAC 2 cut(s) 346, 2392
HindIII AAGCTT 1 cut(s) 1412
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 215, 1640
HphI GGTGA 3 cut(s) 42, 755, 1895
Hpy166II GTNNAC 4 cut(s) 346, 2040, 2392, 2424
Hpy188I TCNGA 9 cut(s) 112, 247, 547, 720, 961, 1279, 1393, 1758, 2577
Hpy188III TCNNGA 7 cut(s) 1010, 1088, 1325, 1575, 2045, 2222, 2360
Hpy8I GTNNAC 4 cut(s) 346, 2040, 2392, 2424
HpyCH4IV ACGT 4 cut(s) 528, 660, 1992, 2420
HpyF10VI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
HpyF3I CTNAG 5 cut(s) 23, 1429, 1593, 1941, 2277
HpySE526I ACGT 4 cut(s) 528, 660, 1992, 2420
Hsp92II CATG 9 cut(s) 643, 743, 1096, 1201, 1315, 1663, 2114, 2126, 2546
HspAI GCGC 3 cut(s) 383, 446, 1598
Ksp22I TGATCA 1 cut(s) 1140
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 4 cut(s) 1140, 1288, 1758, 2113
LguI GCTCTTC 1 cut(s) 2436
LmnI GCTCC 1 cut(s) 1829
Lsp1109I GCAGC 2 cut(s) 220, 1549
MaeI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2222, 2480
MaeII ACGT 4 cut(s) 528, 660, 1992, 2420
MaeIII GTNAC 7 cut(s) 268, 656, 1333, 1648, 1865, 2416, 2473
MalI GATC 4 cut(s) 1142, 1290, 1760, 2115
MboI GATC 4 cut(s) 1140, 1288, 1758, 2113
MfeI CAATTG 2 cut(s) 85, 819
MhlI GDGCHC 1 cut(s) 981
MlyI GAGTC 3 cut(s) 257, 1087, 1637
MmeI TCCRAC 3 cut(s) 511, 534, 834
Mph1103I ATGCAT 3 cut(s) 613, 1024, 1443
MroXI GAANNNNTTC 1 cut(s) 1273
MslI CAYNNNNRTG 2 cut(s) 1097, 2066
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 2 cut(s) 215, 1640
MspR9I CCNGG 1 cut(s) 1982
MunI CAATTG 2 cut(s) 85, 819
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 1982
MvnI CGCG 1 cut(s) 1496
MwoI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
NdeI CATATG 1 cut(s) 1422
NdeII GATC 4 cut(s) 1140, 1288, 1758, 2113
NlaIII CATG 9 cut(s) 643, 743, 1096, 1201, 1315, 1663, 2114, 2126, 2546
NlaIV GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
NmuCI GTSAC 2 cut(s) 656, 2416
NsiI ATGCAT 3 cut(s) 613, 1024, 1443
NspI RCATGY 1 cut(s) 643
NspV TTCGAA 2 cut(s) 2189, 2498
PceI AGGCCT 1 cut(s) 1796
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 2436
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 1273
PkrI GCNGC 6 cut(s) 207, 210, 696, 757, 1495, 1564
PleI GAGTC 3 cut(s) 256, 1086, 1637
PpsI GAGTC 3 cut(s) 256, 1086, 1637
PscI ACATGT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 1980
PspEI GGTNACC 1 cut(s) 1333
PspFI CCCAGC 2 cut(s) 863, 893
PspGI CCWGG 1 cut(s) 1980
PspN4I GGNNCC 7 cut(s) 9, 308, 419, 798, 1113, 1831, 1938
PspPI GGNCC 2 cut(s) 796, 2002
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstI CTGCAG 2 cut(s) 1567, 2087
PstNI CAGNNNCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 1466, 1955, 2423
RsaNI GTAC 3 cut(s) 1465, 1954, 2422
RseI CAYNNNNRTG 2 cut(s) 1097, 2066
SapI GCTCTTC 1 cut(s) 2436
SatI GCNGC 6 cut(s) 206, 209, 695, 756, 1494, 1563
Sau3AI GATC 4 cut(s) 1140, 1288, 1758, 2113
Sau96I GGNCC 2 cut(s) 796, 2002
SchI GAGTC 3 cut(s) 257, 1087, 1637
ScrFI CCNGG 1 cut(s) 1982
SduI GDGCHC 1 cut(s) 981
SfcI CTRYAG 4 cut(s) 1129, 1563, 2083, 2537
SfuI TTCGAA 2 cut(s) 2189, 2498
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 1097, 2066
SmlI CTYRAG 2 cut(s) 827, 1415
SmoI CTYRAG 2 cut(s) 827, 1415
SseBI AGGCCT 1 cut(s) 1796
SspI AATATT 2 cut(s) 986, 1345
SspMI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2222, 2480
StuI AGGCCT 1 cut(s) 1796
StyD4I CCNGG 1 cut(s) 1980
StyI CCWWGG 2 cut(s) 300, 1474
TaiI ACGT 4 cut(s) 531, 663, 1995, 2423
TaqI TCGA 5 cut(s) 538, 981, 1011, 2189, 2498
TatI WGTACW 1 cut(s) 1953
TauI GCSGC 4 cut(s) 208, 697, 758, 1496
TscAI CASTG 9 cut(s) 27, 1150, 1256, 1374, 1756, 1900, 2070, 2421, 2532
TseFI GTSAC 2 cut(s) 656, 2416
TseI GCWGC 2 cut(s) 208, 1562
Tsp45I GTSAC 2 cut(s) 656, 2416
TspDTI ATGAA 9 cut(s) 737, 1068, 1073, 1083, 1285, 1424, 1815, 2144, 2297
TspGWI ACGGA 1 cut(s) 1751
TspRI CASTG 9 cut(s) 27, 1150, 1256, 1374, 1756, 1900, 2070, 2421, 2532
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 3 cut(s) 1061, 1301, 2092
XbaI TCTAGA 2 cut(s) 1574, 2221
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 1273
XspI CTAG 8 cut(s) 522, 654, 906, 1575, 1812, 2177, 2222, 2480
Zsp2I ATGCAT 3 cut(s) 613, 1024, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.