MD05G1241200.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010003
Physical Location & Seq
Reverse (-)
37172792 .. 37179065
6274 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1241200.v1.1.491

Sequence Viewer

Length: 2376 bp
ATGTATATGTGGCTTTCGTCCATTAGACTGGGTTTTCCCAGAAAATGCATTCACCCCACCCAAAACAATCACAACCGTTTGATCTTCGCCCATGGCGGCAGTGGCGGCGGTTCTTTCAAGTGGGCATCTTCCCAGGCGGCACTTGCCCTCTGGAACTCCAGTTCCTCCCACTCTGATGAATCATCTGATGATAATTCTGTCACTGTTTGTACCACAAACGTCGCTACCAATGGCGCCAATAGAACCCATTGCTTCTCCGAATTAGATACTTCTGGGGTTGTTAGCAAGCTCAACTGTCTAAGAAACGAACCCAATTTGGCGATTTCGTTCTTTCACCGGGTGAAGGGAGATGGCTTTCGACACAATGTCTACACGTATTCCGCGCTTATTAGAATTTTGTGCTGTTGGGGTCTGGATAGGAAGTTGGATTCTCTCTTTGTGAACCTTATTAATTGCTGTGAAGACCTTGAATTCGAGATTTCGGATTTGATGGAAGCGATTGAGGAGGGAATTGAGGTTTCCCCATCGATGATCCGAGCCTATGATGCATTGCTCAAGTCTTTTGTCAGTTTGAACATGTTCGATGAGGCTATTGATGTTTTATTCCAGACAAAAAGACGTGGGTTTGTGCCCCATATCTTTACGAGTAATTTTCTAATGAACCGCTTGGTTGAGCATAGTAAAGTGGATATGGCTGTGGCTATATACAAGCAGTTGAAGCGGATTGGTATGAACCCTAATGATTACACTTACGCAATTGTCATCAAGGGACTCTGCAAGAAAGGTAGCTTGGAAGAGGCTGTGGAAGTGTTTCAGGAGATGCAGGAAGCCGGGGTAACCCCTAGCGCCTTTGCTTACACAGCGTATATTGAAGGGCTTTGCACCAATCACAGGCCGGATTTAGGGTACCAAGTGCTCCAAGCATGCCATGGGGAAAATGTTCTTATCGATGTGTATGCTTATAACGCTGTCATTCGTGGGTTCTGCAACGAGATGAAGTTTGATGAAGCTGAAAGCATCCTTCTTGACATGGAAAAGCGAGGGCTGGTCCCTGATTCATATACCTACAGTGTGATGATCTGTGGCTACTGCAAGAGTTCCAAGTTGTTGAAAGCTTTGGCTCTTCATAATGACATGGAGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTAGTTTGATTCTTCAATGCATGTGTAACATGGGCATGCCTTCTGAAGCGGTGGATCAGTTTAGAGAATATAAGAGCTTGGGAATCTATCTTGATGAGGTTTCCTACAATATCGCGGTAGATGCCTTTTGCAAGCTGGGGAAAATGGAACAAGCCTTAGAATTGCTTGAAGAGATGAAGTGTAAGCATATGGTTTTAGATATTATGCATTACACGACATTGATCAAAGGCTACTTTCTCCAAGGGCATGTTGTCGAGGCTGCAAGTTTTTTGAAGGAAATGAAGGAAAAGGGTCTGAAGCCAGACATCACTACGTACAATGTACTTGACCTTTTGGATTATATGGGGGCACATGGTTTTAAACCAGACTCTGTTACACACAACATGATAATTGAAAATTTATGTGTAGGAGGAAAAGTCAAGGAAGCTGAAGCGTTTCTATACAGTTTGGAATATAAGAATGCGGATACCTATTCTGCCATGGTCAACGGGTACTGTGAAGCCAACCATACAAAAGAGGCCTATGAACTTCTTATTAGATTAGCAAAGCAAGGAACTTTAGTTAAACAAGGGCTTGCTTTAAAGTACTCAGCAATGTTGGCGTTAAATGTGGATCCTAAAAGAATTATGTACAACAAAGTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGAAAAAGGCCCGTTGGGTTTTTAATTCTTTGGTTGAGAGAGGGTTAACTCCTGATGTCATTACCTACACAATGATGATGAATAGCTACTGCAAGGTGAATTGTTTGCAAGAAGCCCATGATCTCTTCCATGATATGAAAATGAGAGGGATTCAACCTGATGTCATCACTTACACAGTTTTGCTCGAAGGTTTTCCCAAACAAAATGTAAGAAGGGTTAATTCCTCTCGAGATGCAAGTGGAGATAAGGATGAAACTTTTGATGCATGTACTGTTTGGACTGAGATGAAGGAAATGGAAATAAGACCCGATGTAATTAGTTATACTGTTTTGATAGACAGGCAGTGTAAAACAGACAACTTTCAGGATGCTATTGCACTTTTTGATGAAATGATGAACAGAGGACTAGAGCCTGATATAGTGACATACACAGCTCTTCTGGCTGGCTGTTGTAGGAGGGGAGATGTGGATAGGGCTGTAACACTCGCTAATGAGATGTCCTCTAAGGGAATGCTGCCAAATGCCCGTATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

792

Amino Acids

89.1

Weight (kDa)

5.74

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 211 - 260 1.2e-11 PPR repeat family
TPR_24 PF23276 225 - 336 1e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 235 - 290 8.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 243 - 275 1.7e-11 PPR repeat
PPR PF01535 249 - 279 4.1e-08 PPR repeat
PPR_2 PF13041 253 - 294 3e-11 PPR repeat family
TPR_24 PF23276 296 - 413 8.9e-07 Fungal tetratrico peptide repeats
PPR_long PF17177 301 - 402 1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 305 - 361 4.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 317 - 365 8.2e-17 PPR repeat family
PPR PF01535 320 - 349 3.7e-06 PPR repeat
PPR_1 PF12854 347 - 380 2.9e-08 PPR repeat
PPR PF01535 354 - 384 4.2e-07 PPR repeat
PPR_2 PF13041 391 - 435 3.7e-06 PPR repeat family
PPR_1 PF12854 418 - 450 9.4e-09 PPR repeat
PPR_2 PF13041 422 - 455 2.5e-07 PPR repeat family
PPR PF01535 424 - 452 2.9e-07 PPR repeat
PPR_3 PF13812 445 - 499 4.7e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 457 - 499 1.9e-11 PPR repeat family
PPR_2 PF13041 598 - 645 1.1e-12 PPR repeat family
PPR_1 PF12854 627 - 660 9.4e-09 PPR repeat
PPR_2 PF13041 631 - 678 3.4e-18 PPR repeat family
PPR PF01535 634 - 664 1.4e-07 PPR repeat
PPR_long PF17177 636 - 785 1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 713 - 744 4.8e-06 PPR repeat
PPR_2 PF13041 716 - 765 1.1e-16 PPR repeat family
PPR_3 PF13812 740 - 787 1.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 747 - 780 7.4e-11 PPR repeat
PPR_2 PF13041 751 - 788 4.9e-10 PPR repeat family
PPR PF01535 754 - 783 6.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 2 cut(s) 233, 906
AccI GTMKAC 2 cut(s) 369, 2368
AccII CGCG 2 cut(s) 383, 1286
AclWI GGATC 4 cut(s) 526, 1233, 1778, 1791
AcsI RAATTY 3 cut(s) 393, 470, 1567
AcuI CTGAAG 3 cut(s) 1236, 1487, 1620
AcyI GRCGYC 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 340
AfaI GTAC 8 cut(s) 211, 908, 1487, 1494, 1664, 1757, 1802, 2110
AfiI CCNNNNNNNGG 3 cut(s) 343, 891, 902
AflIII ACRYGT 2 cut(s) 372, 576
AhdI GACNNNNNGTC 2 cut(s) 365, 1138
AjiI CACGTC 1 cut(s) 620
AjnI CCWGG 2 cut(s) 132, 1827
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AloI GAACNNNNNNTCC 4 cut(s) 145, 146, 177, 178
Alw21I GWGCWC 1 cut(s) 918
AlwI GGATC 4 cut(s) 526, 1233, 1778, 1791
AlwNI CAGNNNCTG 1 cut(s) 1541
Ama87I CYCGRG 1 cut(s) 2067
AoxI GGCC 3 cut(s) 893, 1689, 1848
ApeKI GCWGC 2 cut(s) 1430, 2353
ApoI RAATTY 3 cut(s) 393, 470, 1567
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 5 cut(s) 578, 810, 939, 1605, 2031
Asp718I GGTACC 1 cut(s) 906
AspLEI GCGC 3 cut(s) 236, 385, 848
AspS9I GGNCC 2 cut(s) 1048, 1849
AsuC2I CCSGG 2 cut(s) 338, 832
AsuHPI GGTGA 5 cut(s) 44, 326, 352, 1852, 1948
AvaI CYCGRG 1 cut(s) 2067
AvaII GGWCC 1 cut(s) 1048
BaeGI GKGCMC 2 cut(s) 633, 1522
BamHI GGATCC 1 cut(s) 1783
BanI GGYRCC 2 cut(s) 233, 906
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 2 cut(s) 1417, 2340
BccI CCATC 3 cut(s) 344, 484, 532
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 2 cut(s) 134, 1829
BciVI GTATCC 1 cut(s) 1630
BclI TGATCA 1 cut(s) 1392
BcnI CCSGG 2 cut(s) 338, 832
BfaI CTAG 2 cut(s) 843, 2246
BfmI CTRYAG 1 cut(s) 1066
BfoI RGCGCY 2 cut(s) 237, 849
BfuI GTATCC 1 cut(s) 1630
BisI GCNGC 5 cut(s) 97, 106, 138, 1431, 2354
BlsI GCNGC 5 cut(s) 98, 107, 139, 1432, 2355
BmcAI AGTACT 1 cut(s) 1757
Bme1390I CCNGG 4 cut(s) 134, 338, 832, 1829
Bme18I GGWCC 1 cut(s) 1048
BmeRI GACNNNNNGTC 2 cut(s) 365, 1138
BmeT110I CYCGRG 1 cut(s) 2067
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 1048, 1849
BmiI GGNNCC 4 cut(s) 235, 908, 1050, 1785
BmrFI CCNGG 4 cut(s) 134, 338, 832, 1829
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 8 cut(s) 134, 535, 810, 1026, 1282, 2062, 2092, 2197
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 2324, 2356
BpmI CTGGAG 2 cut(s) 142, 1854
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 338, 832
Bsa29I ATCGAT 2 cut(s) 527, 948
BsaAI YACGTR 2 cut(s) 375, 1485
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 6 cut(s) 91, 132, 831, 928, 1411, 1650
BsaXI ACNNNNNCTCC 2 cut(s) 1572, 1602
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 891, 902
Bse1I ACTGG 2 cut(s) 33, 159
Bse3DI GCAATG 3 cut(s) 247, 548, 1770
BseBI CCWGG 2 cut(s) 134, 1829
BseCI ATCGAT 2 cut(s) 527, 948
BseDI CCNNGG 6 cut(s) 91, 132, 831, 928, 1411, 1650
BseGI GGATG 3 cut(s) 1017, 2095, 2212
BseLI CCNNNNNNNGG 3 cut(s) 343, 891, 902
BseMI GCAATG 3 cut(s) 247, 548, 1770
BseMII CTCAG 2 cut(s) 1773, 2112
BseNI ACTGG 2 cut(s) 33, 159
BseRI GAGGAG 1 cut(s) 518
BseSI GKGCMC 2 cut(s) 633, 1522
BseXI GCAGC 2 cut(s) 1417, 2340
BseYI CCCAGC 1 cut(s) 1306
Bsh1236I CGCG 2 cut(s) 383, 1286
BshFI GGCC 3 cut(s) 895, 1691, 1850
BshNI GGYRCC 2 cut(s) 233, 906
BshVI ATCGAT 2 cut(s) 527, 948
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 1 cut(s) 2067
BsiSI CCGG 3 cut(s) 337, 831, 896
BslFI GGGAC 2 cut(s) 783, 1034
BslI CCNNNNNNNGG 3 cut(s) 343, 891, 902
BsmFI GGGAC 2 cut(s) 783, 1034
BsmI GAATGC 3 cut(s) 48, 1636, 2355
BsnI GGCC 3 cut(s) 895, 1691, 1850
BsoBI CYCGRG 1 cut(s) 2067
Bsp1286I GDGCHC 3 cut(s) 633, 918, 1522
Bsp1407I TGTACA 1 cut(s) 1800
Bsp143I GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
Bsp19I CCATGG 3 cut(s) 91, 928, 1650
BspANI GGCC 3 cut(s) 895, 1691, 1850
BspCNI CTCAG 2 cut(s) 1772, 2113
BspDI ATCGAT 2 cut(s) 527, 948
BspFNI CGCG 2 cut(s) 383, 1286
BspLI GGNNCC 4 cut(s) 235, 908, 1050, 1785
BspPI GGATC 4 cut(s) 526, 1233, 1778, 1791
BspQI GCTCTTC 2 cut(s) 1128, 2280
BspT107I GGYRCC 2 cut(s) 233, 906
BsrDI GCAATG 3 cut(s) 247, 548, 1770
BsrGI TGTACA 1 cut(s) 1800
BsrI ACTGG 2 cut(s) 33, 159
BssECI CCNNGG 6 cut(s) 91, 132, 831, 928, 1411, 1650
BssMI GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
BssNAI GTATAC 1 cut(s) 2369
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 4 cut(s) 91, 928, 1411, 1650
Bst1107I GTATAC 1 cut(s) 2369
Bst2UI CCWGG 2 cut(s) 134, 1829
Bst4CI ACNGT 9 cut(s) 77, 205, 296, 1070, 1616, 1667, 2017, 2113, 2167
Bst6I CTCTTC 5 cut(s) 789, 1128, 1335, 1970, 2280
BstACI GRCGYC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 1800
BstBAI YACGTR 2 cut(s) 375, 1485
BstC8I GCNNGC 6 cut(s) 287, 925, 1208, 1304, 1746, 2284
BstDEI CTNAG 5 cut(s) 299, 1327, 1759, 2121, 2343
BstDSI CCRYGG 3 cut(s) 91, 928, 1650
BstEII GGTNACC 1 cut(s) 835
BstF5I GGATG 3 cut(s) 1017, 2095, 2212
BstFNI CGCG 2 cut(s) 383, 1286
BstH2I RGCGCY 2 cut(s) 237, 849
BstHHI GCGC 3 cut(s) 236, 385, 848
BstKTI GATC 7 cut(s) 84, 534, 1080, 1228, 1395, 1786, 1963
BstMBI GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
BstNI CCWGG 2 cut(s) 134, 1829
BstNSI RCATGY 6 cut(s) 580, 927, 1195, 1210, 1421, 2109
BstPI GGTNACC 1 cut(s) 835
BstSCI CCNGG 4 cut(s) 132, 336, 830, 1827
BstSFI CTRYAG 1 cut(s) 1066
BstSLI GKGCMC 2 cut(s) 633, 1522
BstSNI TACGTA 1 cut(s) 1485
BstUI CGCG 2 cut(s) 383, 1286
BstV1I GCAGC 2 cut(s) 1417, 2340
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 1783
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 1783
BstZ17I GTATAC 1 cut(s) 2369
Bsu15I ATCGAT 2 cut(s) 527, 948
BsuI GTATCC 1 cut(s) 1630
BsuRI GGCC 3 cut(s) 895, 1691, 1850
BsuTUI ATCGAT 2 cut(s) 527, 948
BtgI CCRYGG 3 cut(s) 91, 928, 1650
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 3 cut(s) 1017, 2095, 2212
BtsI GCAGTG 2 cut(s) 106, 2189
BtsIMutI CAGTG 4 cut(s) 106, 201, 1075, 2189
Cac8I GCNNGC 6 cut(s) 287, 925, 1208, 1304, 1746, 2284
CaiI CAGNNNCTG 1 cut(s) 1541
CfoI GCGC 3 cut(s) 236, 385, 848
Cfr13I GGNCC 2 cut(s) 1048, 1849
ClaI ATCGAT 2 cut(s) 527, 948
Csp6I GTAC 8 cut(s) 210, 907, 1486, 1493, 1663, 1756, 1801, 2109
CviQI GTAC 8 cut(s) 210, 907, 1486, 1493, 1663, 1756, 1801, 2109
DdeI CTNAG 5 cut(s) 299, 1327, 1759, 2121, 2343
DinI GGCGCC 1 cut(s) 235
DpnI GATC 7 cut(s) 83, 533, 1079, 1227, 1394, 1785, 1962
DpnII GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
DraI TTTAAA 2 cut(s) 1531, 1752
DraIII CACNNNGTG 1 cut(s) 340
DriI GACNNNNNGTC 2 cut(s) 365, 1138
Eam1104I CTCTTC 5 cut(s) 789, 1128, 1335, 1970, 2280
Eam1105I GACNNNNNGTC 2 cut(s) 365, 1138
EarI CTCTTC 5 cut(s) 789, 1128, 1335, 1970, 2280
Eco105I TACGTA 1 cut(s) 1485
Eco130I CCWWGG 4 cut(s) 91, 928, 1411, 1650
Eco147I AGGCCT 1 cut(s) 1691
Eco47I GGWCC 1 cut(s) 1048
Eco57I CTGAAG 3 cut(s) 1236, 1487, 1620
Eco88I CYCGRG 1 cut(s) 2067
Eco91I GGTNACC 1 cut(s) 835
EcoO65I GGTNACC 1 cut(s) 835
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 132, 1827
EcoT14I CCWWGG 4 cut(s) 91, 928, 1411, 1650
EcoT22I ATGCAT 5 cut(s) 50, 550, 1193, 1380, 2107
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 4 cut(s) 91, 928, 1411, 1650
FaqI GGGAC 2 cut(s) 783, 1034
FauNDI CATATG 1 cut(s) 1359
FbaI TGATCA 1 cut(s) 1392
FblI GTMKAC 2 cut(s) 369, 2368
Fnu4HI GCNGC 5 cut(s) 97, 106, 138, 1431, 2354
FokI GGATG 3 cut(s) 1004, 2102, 2219
Fsp4HI GCNGC 5 cut(s) 97, 106, 138, 1431, 2354
FspBI CTAG 2 cut(s) 843, 2246
GlaI GCGC 3 cut(s) 235, 384, 847
GluI GCNGC 5 cut(s) 97, 106, 138, 1431, 2354
GsaI CCCAGC 1 cut(s) 1310
GsuI CTGGAG 2 cut(s) 142, 1854
HaeII RGCGCY 2 cut(s) 237, 849
HaeIII GGCC 3 cut(s) 895, 1691, 1850
HapII CCGG 3 cut(s) 337, 831, 896
HhaI GCGC 3 cut(s) 236, 385, 848
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 3 cut(s) 234, 383, 846
HinP1I GCGC 3 cut(s) 234, 383, 846
HincII GTYRAC 2 cut(s) 1657, 1887
HindII GTYRAC 2 cut(s) 1657, 1887
HindIII AAGCTT 1 cut(s) 1113
HinfI GANTC 9 cut(s) 179, 428, 771, 1055, 1139, 1180, 1254, 1538, 1990
HpaI GTTAAC 1 cut(s) 1887
HpaII CCGG 3 cut(s) 337, 831, 896
HphI GGTGA 5 cut(s) 44, 326, 352, 1852, 1948
Hpy166II GTNNAC 5 cut(s) 370, 442, 1657, 1887, 2369
Hpy188I TCNGA 8 cut(s) 175, 187, 259, 484, 536, 1216, 1467, 2375
Hpy8I GTNNAC 5 cut(s) 370, 442, 1657, 1887, 2369
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 9 cut(s) 337, 866, 1031, 1221, 1438, 1447, 2021, 2046, 2122
HpyCH4III ACNGT 9 cut(s) 77, 205, 296, 1070, 1616, 1667, 2017, 2113, 2167
HpyCH4IV ACGT 4 cut(s) 219, 374, 619, 1484
HpyF3I CTNAG 5 cut(s) 299, 1327, 1759, 2121, 2343
HpySE526I ACGT 4 cut(s) 219, 374, 619, 1484
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 3 cut(s) 234, 383, 846
KasI GGCGCC 1 cut(s) 233
KpnI GGTACC 1 cut(s) 910
Ksp22I TGATCA 1 cut(s) 1392
KspAI GTTAAC 1 cut(s) 1887
Kzo9I GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
LguI GCTCTTC 2 cut(s) 1128, 2280
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 2 cut(s) 1417, 2340
LweI GCATC 8 cut(s) 134, 535, 810, 1026, 1282, 2062, 2092, 2197
MaeI CTAG 2 cut(s) 843, 2246
MaeII ACGT 4 cut(s) 219, 374, 619, 1484
MaeIII GTNAC 6 cut(s) 199, 835, 1196, 1543, 2260, 2317
MalI GATC 7 cut(s) 83, 533, 1079, 1227, 1394, 1785, 1962
MboI GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
MboII GAAGA 9 cut(s) 76, 120, 473, 806, 1115, 1175, 1352, 1957, 2267
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 1 cut(s) 1783
MhlI GDGCHC 3 cut(s) 633, 918, 1522
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 3 cut(s) 765, 1148, 1532
MmeI TCCRAC 1 cut(s) 405
Mph1103I ATGCAT 5 cut(s) 50, 550, 1193, 1380, 2107
MroXI GAANNNNTTC 5 cut(s) 578, 810, 939, 1605, 2031
MseI TTAA 8 cut(s) 450, 1530, 1734, 1751, 1775, 1863, 1886, 2058
MslI CAYNNNNRTG 3 cut(s) 174, 1205, 1913
MspI CCGG 3 cut(s) 337, 831, 896
MspR9I CCNGG 4 cut(s) 134, 338, 832, 1829
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 3 cut(s) 48, 1636, 2355
MvaI CCWGG 2 cut(s) 134, 1829
MvnI CGCG 2 cut(s) 383, 1286
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 2 cut(s) 338, 832
NcoI CCATGG 3 cut(s) 91, 928, 1650
NdeI CATATG 1 cut(s) 1359
NdeII GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
NlaIV GGNNCC 4 cut(s) 235, 908, 1050, 1785
NmuCI GTSAC 2 cut(s) 199, 2260
NsiI ATGCAT 5 cut(s) 50, 550, 1193, 1380, 2107
NspI RCATGY 6 cut(s) 580, 927, 1195, 1210, 1421, 2109
PaeI GCATGC 2 cut(s) 927, 1210
PaeR7I CTCGAG 1 cut(s) 2067
PceI AGGCCT 1 cut(s) 1691
PciI ACATGT 1 cut(s) 576
PciSI GCTCTTC 2 cut(s) 1128, 2280
PctI GAATGC 3 cut(s) 48, 1636, 2355
PdmI GAANNNNTTC 5 cut(s) 578, 810, 939, 1605, 2031
PfeI GAWTC 6 cut(s) 179, 428, 1055, 1180, 1254, 1990
PkrI GCNGC 5 cut(s) 98, 107, 139, 1432, 2355
PleI GAGTC 3 cut(s) 765, 1147, 1532
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 3 cut(s) 765, 1147, 1532
Ppu21I YACGTR 2 cut(s) 375, 1485
PscI ACATGT 1 cut(s) 576
PshBI ATTAAT 1 cut(s) 450
PsiI TTATAA 1 cut(s) 963
Psp6I CCWGG 2 cut(s) 132, 1827
PspEI GGTNACC 1 cut(s) 835
PspFI CCCAGC 1 cut(s) 1306
PspGI CCWGG 2 cut(s) 132, 1827
PspN4I GGNNCC 4 cut(s) 235, 908, 1050, 1785
PspPI GGNCC 2 cut(s) 1048, 1849
PstNI CAGNNNCTG 1 cut(s) 1541
PsuI RGATCY 1 cut(s) 1783
RsaI GTAC 8 cut(s) 211, 908, 1487, 1494, 1664, 1757, 1802, 2110
RsaNI GTAC 8 cut(s) 210, 907, 1486, 1493, 1663, 1756, 1801, 2109
RseI CAYNNNNRTG 3 cut(s) 174, 1205, 1913
SapI GCTCTTC 2 cut(s) 1128, 2280
SaqAI TTAA 8 cut(s) 450, 1530, 1734, 1751, 1775, 1863, 1886, 2058
SatI GCNGC 5 cut(s) 97, 106, 138, 1431, 2354
Sau3AI GATC 7 cut(s) 81, 531, 1077, 1225, 1392, 1783, 1960
Sau96I GGNCC 2 cut(s) 1048, 1849
ScaI AGTACT 1 cut(s) 1757
SchI GAGTC 3 cut(s) 765, 1148, 1532
ScrFI CCNGG 4 cut(s) 134, 338, 832, 1829
SduI GDGCHC 3 cut(s) 633, 918, 1522
SfaNI GCATC 8 cut(s) 134, 535, 810, 1026, 1282, 2062, 2092, 2197
SfcI CTRYAG 1 cut(s) 1066
SfoI GGCGCC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 2067
SinI GGWCC 1 cut(s) 1048
SlaI CTCGAG 1 cut(s) 2067
SmiMI CAYNNNNRTG 3 cut(s) 174, 1205, 1913
SmlI CTYRAG 2 cut(s) 554, 2067
SmoI CTYRAG 2 cut(s) 554, 2067
SnaBI TACGTA 1 cut(s) 1485
SphI GCATGC 2 cut(s) 927, 1210
SseBI AGGCCT 1 cut(s) 1691
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 2 cut(s) 843, 2246
StuI AGGCCT 1 cut(s) 1691
StyD4I CCNGG 4 cut(s) 132, 336, 830, 1827
StyI CCWWGG 4 cut(s) 91, 928, 1411, 1650
TaaI ACNGT 9 cut(s) 77, 205, 296, 1070, 1616, 1667, 2017, 2113, 2167
TaiI ACGT 4 cut(s) 222, 377, 622, 1487
TaqI TCGA 8 cut(s) 358, 474, 527, 582, 948, 1425, 2025, 2068
TatI WGTACW 4 cut(s) 1492, 1755, 1800, 2108
TauI GCSGC 3 cut(s) 99, 108, 140
TfiI GAWTC 6 cut(s) 179, 428, 1055, 1180, 1254, 1990
Tru1I TTAA 8 cut(s) 450, 1530, 1734, 1751, 1775, 1863, 1886, 2058
Tru9I TTAA 8 cut(s) 450, 1530, 1734, 1751, 1775, 1863, 1886, 2058
TscAI CASTG 4 cut(s) 106, 208, 1075, 2189
TseFI GTSAC 2 cut(s) 199, 2260
TseI GCWGC 2 cut(s) 1430, 2353
Tsp45I GTSAC 2 cut(s) 199, 2260
TspRI CASTG 4 cut(s) 106, 208, 1075, 2189
VpaK11BI GGWCC 1 cut(s) 1048
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 3 cut(s) 393, 470, 1567
XceI RCATGY 6 cut(s) 580, 927, 1195, 1210, 1421, 2109
XcmI CCANNNNNNNNNTGG 2 cut(s) 98, 926
XhoI CTCGAG 1 cut(s) 2067
XmiI GTMKAC 2 cut(s) 369, 2368
XmnI GAANNNNTTC 5 cut(s) 578, 810, 939, 1605, 2031
XspI CTAG 2 cut(s) 843, 2246
ZrmI AGTACT 1 cut(s) 1757
Zsp2I ATGCAT 5 cut(s) 50, 550, 1193, 1380, 2107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.