RLG00000032683

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010003
Physical Location & Seq
Forward (+)
17799089 .. 17802642
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032683

Sequence Viewer

Length: 2802 bp
ATGTGGGTTCCTTCAATTACACTGAGTTTTCCCAGAAAGCTCATTCAATCACCAAGAACTCCTCTCAACCATTTTAAGCTCATCAATTGGTTTTCAAGTTGTTCACTTTCTGATGATGATGATGGTTGTTGCACTACAAACACTAACACAAGCACCCAAGAGGTTTATGGCGGTGGGATTGTGTGTGGTTTCAAGTGGGCATCGCCGCAGCAACCGGCTATTGCCCACTGTGATTCAAGGTCTTCAGAGTCTGGTGGTATTAGTTCAGTTACTGATTGCAGAACAGACATTACCAATGCCAAGAGGAACCGTTTGGTTGCGGACTTGGAGACGTCGGAGGTTGTTAACAAGCTCAACGGGTTTAAAAGCAAACCCAATTCGGCGTTTTCCTTGTTCCGCCAGTTGAAGGAAGAAGGGTTCCAGCACAATGTTTTGACATACTGTGCGCTTGTAAGGATATTGTGTTATTGGCGTTTGGACAGGAAGTTGGATTCTCTGTTCTTGGAGGTTATTAGTGGCGCTAGAGATGTTGGATTTCGATTATCAGATTTGTTGGAAGCGATGGAGGAGGAAATTGAGGTTTCCCCGTCAATGGTTCGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGAGGCTAGTGATGTTTTGTTCCATACCAGAAGGCGTGGATTTGTGCCGCATATCTTTACAGTTAATTTTCTCATGAATCGGTTGATTGAGCATGGTGAAGTGGGTGTGGCTTTGTCTATATACAAGCAGTTGAAGGGGATTGGTTTGGTCCCTAATGATTACACCTATGCAATTGTCATCAAGGGATTTTGTAAGGAGGGTAGGTTGGAAGAGGCTGGGGAAGTGTTTGAGGAGATGGAGTTAGCCGGGGTAGCCCCTAGCGTGTTTGCCTACACAGCATATATTGAAGGACTTTGCAACAAGGGGTGTTCTGATGTAGGATGTCAAGTGCTCCAATATTGCAAAAGTGAAAATATCCTTCTTGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAGATGAAATTTGATGAAGCAGAAAGTCTCTTTCTTGACATGGAAAAGCAAGGCGTGGTGCCTGATTCATGCATCTACAGTGCAATGATTAGTGGCTATTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTGGTTTTATTCTTCAGTGCCTCTGTAAGATTGGAATGCCTTCTGATGCTGTGGATCAATTCATAGAATTTAAGAGCATGGGGATATATCTTGATGAGGTTACCTACAATATTGCTGTTGATGCTTTATGCACACTGCAGAGAGTGGAAGAAGCCTCTGAATTGCTGGAAGAGATGAAGCTTAAGCATATGAGCTTAGATATTATGCATTACACCACATTGATTAAAGGGTACTGTCTCCAAGGGAAAGTTGTTGATGCCACGAATCTTTTGGAGGAAATGTATGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTTCTAGAAATGGATTGGTATCTAAGGCGCTTGGCCTTTTGGTTTATATGGAGGCACAGGGTTTTAAACCAGACTCTGTTACACACAGCATGGTAATTAAGAATCTCTGCATAGGAGGAAAAGTCAAAGAAGCTGAAGCATTTTTAAATAATTTGGTAGATAAGAGTGAAGAGACCTACACTGCTCTGATCCGTGGATACTGTGAAGCTAACAATACAAGGAAGGCCTATGAACTTATTTCTAGGCTGGCAAAGCAGGGAACCATTAACAAAGGTGTTTGCTTTAAAGTACTTGGTAACCTTTGTATGGAAGGTGATAATGGCAGTGCTATCTTGTTGTTTGAGAGAATGTTCGCCTTGAATGTGGAACCTAAGAGAATTATGTACAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGCAAAAGGCCCGCCTGTTTTTTGATTCTTCAGTTGCGAGAGGGTTTACTCCTGATGTCATTGACTACACAGTGATGATAAATAGCTACTGCAGGGGGAATTCTTTGTGCGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTAGATGGATTTTCGAAAAGAAACATAAGAAGGGTTCGTTCCCCTCTAGATGCAAGGGGAAATAGGGAAGAAATGGCGGATGCTTCTACTATACTTTGGACTGAGATGAAGGAAATGGGAATAAGACCTGATGCCATTTGTTATACTGTTTTGATAGACAGGCATTGTAAAACAGACAACCTTCAGGATGCTATTGCACTCTTTGACTTAATGATTGACAGAGGATTAAAACCTGATACAGTGACATACACAGCTCTTCTGTCTGGCTATTGTAATAGAAGAGATGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCTTCGAAGGGAATACAGCCAGATGCCTGCACACTCTGGATGGGTGTCCCTGTGACAACAATAATGCTTGCCGAAACTGATTTGGTGGGAGCCTCATTTTCTAGGCCACCTGGCCCACCCCTAGCTGGAGTGACTTGGTGGTCGCAAAACAGGGTTGTAAATACATCTAGCCCCTTCCCAGATCACCCCATATTGGTCGGAAGATCATGGACTGTTCCACCTGGCAGTTCACCTGGAAGTCAACCATGCCTAGGACTGTCATTTAGCAAGACCGAGTGTTGTTTCTTTTTTGACTCAGGAGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

934

Amino Acids

103.84

Weight (kDa)

5.56

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 232 - 281 3.3e-10 PPR repeat family
PPR_1 PF12854 264 - 296 4.3e-12 PPR repeat
PPR PF01535 270 - 300 5.5e-07 PPR repeat
PPR_2 PF13041 274 - 316 8.9e-11 PPR repeat family
PPR_2 PF13041 338 - 386 4.7e-11 PPR repeat family
PPR_1 PF12854 369 - 401 7.3e-07 PPR repeat
PPR_2 PF13041 372 - 409 2e-07 PPR repeat family
PPR PF01535 376 - 405 1.4e-06 PPR repeat
PPR_2 PF13041 414 - 455 9.1e-07 PPR repeat family
PPR_1 PF12854 438 - 471 8.8e-08 PPR repeat
PPR_3 PF13812 466 - 520 1.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 505 7.7e-09 PPR repeat
PPR_2 PF13041 478 - 525 6.3e-13 PPR repeat family
PPR_1 PF12854 508 - 541 2.7e-06 PPR repeat
PPR_2 PF13041 515 - 560 7.9e-09 PPR repeat family
PPR_2 PF13041 650 - 696 1e-06 PPR repeat family
PPR_3 PF13812 673 - 730 1.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 678 - 711 3.9e-07 PPR repeat
PPR_2 PF13041 682 - 731 1.5e-16 PPR repeat family
PPR_long PF17177 686 - 839 5.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 764 - 796 1.3e-06 PPR repeat
PPR_2 PF13041 768 - 817 2.9e-15 PPR repeat family
PPR_3 PF13812 792 - 842 1.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 799 - 832 2.2e-11 PPR repeat
PPR_2 PF13041 803 - 842 3.8e-12 PPR repeat family
PPR PF01535 806 - 836 1.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2632
AatII GACGTC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 1111
AciI CCGC 7 cut(s) 171, 206, 320, 397, 695, 2005, 2252
AclWI GGATC 2 cut(s) 1296, 1753
AcsI RAATTY 3 cut(s) 1061, 1301, 2092
AcuI CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2342
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 3 cut(s) 1466, 1860, 1955
AfiI CCNNNNNNNGG 6 cut(s) 406, 592, 1876, 2618, 2686, 2744
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 1201
AjnI CCWGG 4 cut(s) 1980, 2602, 2713, 2725
AloI GAACNNNNNNTCC 4 cut(s) 401, 433, 482, 514
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 5 cut(s) 323, 627, 1085, 1475, 1736
AlwI GGATC 2 cut(s) 1296, 1753
AlwNI CAGNNNCTG 3 cut(s) 251, 272, 1646
AoxI GGCC 5 cut(s) 1603, 1794, 2001, 2597, 2605
ApeKI GCWGC 2 cut(s) 208, 1562
ApoI RAATTY 3 cut(s) 1061, 1301, 2092
Asp700I GAANNNNTTC 1 cut(s) 1273
AspA2I CCTAGG 1 cut(s) 2743
AspLEI GCGC 3 cut(s) 448, 521, 1600
AspS9I GGNCC 3 cut(s) 796, 2002, 2606
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 5 cut(s) 42, 755, 1895, 2669, 2715
AsuII TTCGAA 2 cut(s) 2189, 2498
AvaII GGWCC 1 cut(s) 796
AvrII CCTAGG 1 cut(s) 2743
BanI GGYRCC 1 cut(s) 1111
BbsI GAAGAC 2 cut(s) 234, 2487
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 220, 1549
BccI CCATC 5 cut(s) 116, 556, 877, 2174, 2527
BciT130I CCWGG 4 cut(s) 1982, 2604, 2715, 2727
BciVI GTATCC 1 cut(s) 1760
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 5 cut(s) 323, 627, 1085, 1475, 1736
BfmI CTRYAG 4 cut(s) 1129, 1370, 1563, 2083
BfoI RGCGCY 2 cut(s) 522, 1601
BfrI CTTAAG 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1760
BisI GCNGC 4 cut(s) 206, 209, 695, 1563
BlnI CCTAGG 1 cut(s) 2743
BlsI GCNGC 4 cut(s) 207, 210, 696, 1564
BmcAI AGTACT 1 cut(s) 1860
Bme1390I CCNGG 5 cut(s) 895, 1982, 2604, 2715, 2727
Bme18I GGWCC 1 cut(s) 796
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmgT120I GGNCC 3 cut(s) 796, 2002, 2606
BmiI GGNNCC 8 cut(s) 9, 308, 419, 798, 1113, 1831, 1938, 2584
BmrFI CCNGG 5 cut(s) 895, 1982, 2604, 2715, 2727
BpiI GAAGAC 2 cut(s) 234, 2487
BpmI CTGGAG 2 cut(s) 2007, 2640
Bpu14I TTCGAA 2 cut(s) 2189, 2498
BpuMI CCSGG 1 cut(s) 895
BsaBI GATNNNNATC 1 cut(s) 1588
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 1736
BsaJI CCNNGG 4 cut(s) 894, 1474, 1762, 2743
BsaXI ACNNNNNCTCC 8 cut(s) 836, 866, 872, 902, 1499, 1529, 1677, 1707
Bsc4I CCNNNNNNNGG 6 cut(s) 406, 592, 1876, 2618, 2686, 2744
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 1 cut(s) 1588
BseBI CCWGG 4 cut(s) 1982, 2604, 2715, 2727
BseDI CCNNGG 4 cut(s) 894, 1474, 1762, 2743
BseGI GGATG 4 cut(s) 974, 2260, 2368, 2538
BseJI GATNNNNATC 1 cut(s) 1588
BseLI CCNNNNNNNGG 6 cut(s) 406, 592, 1876, 2618, 2686, 2744
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 3 cut(s) 14, 2268, 2802
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 3 cut(s) 51, 581, 893
BseXI GCAGC 2 cut(s) 220, 1549
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 2506
BshFI GGCC 5 cut(s) 1605, 1796, 2003, 2599, 2607
BshNI GGYRCC 1 cut(s) 1111
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 215, 894
BslFI GGGAC 2 cut(s) 782, 2525
BslI CCNNNNNNNGG 6 cut(s) 406, 592, 1876, 2618, 2686, 2744
BsmAI GTCTC 5 cut(s) 323, 627, 1085, 1475, 1736
BsmBI CGTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 782, 2525
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 5 cut(s) 1605, 1796, 2003, 2599, 2607
Bso31I GGTCTC 1 cut(s) 1736
Bsp119I TTCGAA 2 cut(s) 2189, 2498
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
BspACI CCGC 7 cut(s) 171, 206, 320, 397, 695, 2005, 2252
BspANI GGCC 5 cut(s) 1605, 1796, 2003, 2599, 2607
BspCNI CTCAG 3 cut(s) 15, 2269, 2801
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 8 cut(s) 9, 308, 419, 798, 1113, 1831, 1938, 2584
BspMAI CTGCAG 3 cut(s) 1374, 1567, 2087
BspPI GGATC 2 cut(s) 1296, 1753
BspQI GCTCTTC 1 cut(s) 2436
BspT104I TTCGAA 2 cut(s) 2189, 2498
BspT107I GGYRCC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 1 cut(s) 1736
BsrDI GCAATG 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 4 cut(s) 894, 1474, 1762, 2743
BssMI GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 1474, 2743
Bst2UI CCWGG 4 cut(s) 1982, 2604, 2715, 2727
Bst6I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
BstACI GRCGYC 1 cut(s) 332
BstAFI CTTAAG 1 cut(s) 1415
BstAUI TGTACA 1 cut(s) 1953
BstBI TTCGAA 2 cut(s) 2189, 2498
BstC8I GCNNGC 4 cut(s) 1818, 2005, 2521, 2562
BstDEI CTNAG 6 cut(s) 23, 1429, 1593, 1941, 2277, 2788
BstDSI CCRYGG 1 cut(s) 1762
BstEII GGTNACC 2 cut(s) 1333, 1865
BstF5I GGATG 4 cut(s) 974, 2260, 2368, 2538
BstH2I RGCGCY 2 cut(s) 522, 1601
BstHHI GCGC 3 cut(s) 448, 521, 1600
BstKTI GATC 5 cut(s) 1291, 1761, 2116, 2677, 2699
BstMAI GTCTC 5 cut(s) 323, 627, 1085, 1475, 1736
BstMBI GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
BstMWI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
BstNI CCWGG 4 cut(s) 1982, 2604, 2715, 2727
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 2 cut(s) 1333, 1865
BstSCI CCNGG 5 cut(s) 893, 1980, 2602, 2713, 2725
BstSFI CTRYAG 4 cut(s) 1129, 1370, 1563, 2083
BstV1I GCAGC 2 cut(s) 220, 1549
BstV2I GAAGAC 2 cut(s) 234, 2487
BsuI GTATCC 1 cut(s) 1760
BsuRI GGCC 5 cut(s) 1605, 1796, 2003, 2599, 2607
BtgI CCRYGG 1 cut(s) 1762
BtgZI GCGATG 2 cut(s) 186, 575
BtsCI GGATG 4 cut(s) 974, 2260, 2368, 2538
BtsI GCAGTG 3 cut(s) 1367, 1749, 1900
BtsIMutI CAGTG 9 cut(s) 20, 226, 1138, 1256, 1367, 1749, 1900, 2070, 2421
Cac8I GCNNGC 4 cut(s) 1818, 2005, 2521, 2562
CaiI CAGNNNCTG 3 cut(s) 251, 272, 1646
CciI TCATGA 1 cut(s) 720
CfoI GCGC 3 cut(s) 448, 521, 1600
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 796, 2002, 2606
Csp6I GTAC 3 cut(s) 1465, 1859, 1954
CviQI GTAC 3 cut(s) 1465, 1859, 1954
DdeI CTNAG 6 cut(s) 23, 1429, 1593, 1941, 2277, 2788
DpnI GATC 5 cut(s) 1290, 1760, 2115, 2676, 2698
DpnII GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
DraI TTTAAA 4 cut(s) 364, 1636, 1716, 1855
DrdI GACNNNNNNGTC 1 cut(s) 2632
DriI GACNNNNNGTC 1 cut(s) 1201
DseDI GACNNNNNNGTC 1 cut(s) 2632
Eam1104I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
EciI GGCGGA 2 cut(s) 386, 2267
Eco130I CCWWGG 2 cut(s) 1474, 2743
Eco147I AGGCCT 1 cut(s) 1796
Eco31I GGTCTC 1 cut(s) 1736
Eco32I GATATC 1 cut(s) 2155
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 5 cut(s) 228, 1232, 1725, 2007, 2342
Eco91I GGTNACC 2 cut(s) 1333, 1865
EcoO65I GGTNACC 2 cut(s) 1333, 1865
EcoRI GAATTC 1 cut(s) 2092
EcoRII CCWGG 4 cut(s) 1980, 2602, 2713, 2725
EcoRV GATATC 1 cut(s) 2155
EcoT14I CCWWGG 2 cut(s) 1474, 2743
EcoT22I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
ErhI CCWWGG 2 cut(s) 1474, 2743
Esp3I CGTCTC 1 cut(s) 323
FaqI GGGAC 2 cut(s) 782, 2525
FauI CCCGC 1 cut(s) 2012
FauNDI CATATG 1 cut(s) 1422
Fnu4HI GCNGC 4 cut(s) 206, 209, 695, 1563
FokI GGATG 4 cut(s) 981, 2267, 2375, 2545
Fsp4HI GCNGC 4 cut(s) 206, 209, 695, 1563
GlaI GCGC 3 cut(s) 447, 520, 1599
GluI GCNGC 4 cut(s) 206, 209, 695, 1563
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 2 cut(s) 2007, 2640
HaeII RGCGCY 2 cut(s) 522, 1601
HaeIII GGCC 5 cut(s) 1605, 1796, 2003, 2599, 2607
HapII CCGG 2 cut(s) 215, 894
HhaI GCGC 3 cut(s) 448, 521, 1600
Hin1I GRCGYC 1 cut(s) 332
Hin6I GCGC 3 cut(s) 446, 519, 1598
HinP1I GCGC 3 cut(s) 446, 519, 1598
HincII GTYRAC 2 cut(s) 346, 2735
HindII GTYRAC 2 cut(s) 346, 2735
HindIII AAGCTT 1 cut(s) 1412
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 215, 894
HphI GGTGA 5 cut(s) 42, 755, 1895, 2669, 2715
Hpy166II GTNNAC 5 cut(s) 104, 346, 2040, 2723, 2735
Hpy188I TCNGA 9 cut(s) 112, 247, 337, 547, 961, 1279, 1393, 1758, 2693
Hpy8I GTNNAC 5 cut(s) 104, 346, 2040, 2723, 2735
Hpy99I CGWCG 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
HpyF3I CTNAG 6 cut(s) 23, 1429, 1593, 1941, 2277, 2788
HpySE526I ACGT 1 cut(s) 332
Hsp92I GRCGYC 1 cut(s) 332
HspAI GCGC 3 cut(s) 446, 519, 1598
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
LguI GCTCTTC 1 cut(s) 2436
LmnI GCTCC 2 cut(s) 984, 2582
Lsp1109I GCAGC 2 cut(s) 220, 1549
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 8 cut(s) 268, 1333, 1648, 1865, 2416, 2473, 2545, 2623
MalI GATC 5 cut(s) 1290, 1760, 2115, 2676, 2698
MboI GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
MfeI CAATTG 2 cut(s) 85, 819
MhlI GDGCHC 1 cut(s) 981
MlyI GAGTC 3 cut(s) 257, 1637, 2780
MmeI TCCRAC 6 cut(s) 315, 468, 511, 534, 834, 2671
Mph1103I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
MroXI GAANNNNTTC 1 cut(s) 1273
MslI CAYNNNNRTG 1 cut(s) 2066
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 2 cut(s) 215, 894
MspR9I CCNGG 5 cut(s) 895, 1982, 2604, 2715, 2727
MunI CAATTG 2 cut(s) 85, 819
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 4 cut(s) 1982, 2604, 2715, 2727
MwoI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
NciI CCSGG 1 cut(s) 895
NdeI CATATG 1 cut(s) 1422
NdeII GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
NlaIV GGNNCC 8 cut(s) 9, 308, 419, 798, 1113, 1831, 1938, 2584
NmuCI GTSAC 3 cut(s) 2416, 2545, 2623
NsiI ATGCAT 4 cut(s) 613, 1024, 1127, 1443
NspI RCATGY 1 cut(s) 643
NspV TTCGAA 2 cut(s) 2189, 2498
PagI TCATGA 1 cut(s) 720
PceI AGGCCT 1 cut(s) 1796
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 2436
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 1273
PfeI GAWTC 8 cut(s) 233, 491, 724, 1118, 1498, 1672, 2018, 2143
PkrI GCNGC 4 cut(s) 207, 210, 696, 1564
PleI GAGTC 3 cut(s) 256, 1637, 2780
PpsI GAGTC 3 cut(s) 256, 1637, 2780
PscI ACATGT 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 1980, 2602, 2713, 2725
PspEI GGTNACC 2 cut(s) 1333, 1865
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 4 cut(s) 1980, 2602, 2713, 2725
PspN4I GGNNCC 8 cut(s) 9, 308, 419, 798, 1113, 1831, 1938, 2584
PspPI GGNCC 3 cut(s) 796, 2002, 2606
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstI CTGCAG 3 cut(s) 1374, 1567, 2087
PstNI CAGNNNCTG 3 cut(s) 251, 272, 1646
RsaI GTAC 3 cut(s) 1466, 1860, 1955
RsaNI GTAC 3 cut(s) 1465, 1859, 1954
RseI CAYNNNNRTG 1 cut(s) 2066
SapI GCTCTTC 1 cut(s) 2436
SatI GCNGC 4 cut(s) 206, 209, 695, 1563
Sau3AI GATC 5 cut(s) 1288, 1758, 2113, 2674, 2696
Sau96I GGNCC 3 cut(s) 796, 2002, 2606
ScaI AGTACT 1 cut(s) 1860
SchI GAGTC 3 cut(s) 257, 1637, 2780
ScrFI CCNGG 5 cut(s) 895, 1982, 2604, 2715, 2727
SduI GDGCHC 1 cut(s) 981
SfcI CTRYAG 4 cut(s) 1129, 1370, 1563, 2083
SfuI TTCGAA 2 cut(s) 2189, 2498
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 2066
SmlI CTYRAG 1 cut(s) 1415
SmoI CTYRAG 1 cut(s) 1415
SseBI AGGCCT 1 cut(s) 1796
SsiI CCGC 7 cut(s) 171, 206, 320, 397, 695, 2005, 2252
SspI AATATT 2 cut(s) 986, 1345
StuI AGGCCT 1 cut(s) 1796
StyD4I CCNGG 5 cut(s) 893, 1980, 2602, 2713, 2725
StyI CCWWGG 2 cut(s) 1474, 2743
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 538, 2189, 2498
TaqII GACCGA 1 cut(s) 2780
TatI WGTACW 2 cut(s) 1858, 1953
TauI GCSGC 2 cut(s) 208, 697
TfiI GAWTC 8 cut(s) 233, 491, 724, 1118, 1498, 1672, 2018, 2143
TscAI CASTG 9 cut(s) 27, 233, 1138, 1256, 1374, 1756, 1900, 2070, 2421
TseFI GTSAC 3 cut(s) 2416, 2545, 2623
TseI GCWGC 2 cut(s) 208, 1562
Tsp45I GTSAC 3 cut(s) 2416, 2545, 2623
TspDTI ATGAA 9 cut(s) 737, 1073, 1083, 1110, 1285, 1424, 1815, 2144, 2297
TspGWI ACGGA 1 cut(s) 1751
TspRI CASTG 9 cut(s) 27, 233, 1138, 1256, 1374, 1756, 1900, 2070, 2421
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 3 cut(s) 1061, 1301, 2092
XbaI TCTAGA 2 cut(s) 1574, 2221
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 1501
XmaJI CCTAGG 1 cut(s) 2743
XmnI GAANNNNTTC 1 cut(s) 1273
ZraI GACGTC 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 1860
Zsp2I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.