Rorug05G0075700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010003
Physical Location & Seq
Reverse (-)
6519070 .. 6519597
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0075700.1

Sequence Viewer

Length: 378 bp
ATGGGGCGGCCCGCTGGAGATCAACACGGCGGACTCGGCCACCGACGACGACCGCAGCCGGAACCTGCAGGACCTCGATCGGGCGGCGCTGTCGTCTCGGCCGCTCGACGAGACGCAACAGAGCTGGCTGCTGGGCCCCACCGGGGAGCAAAAGAAGAAGAAGTATGTGGATCTGGGATGCGTCATCGTCAGCCGCAAGATCTTTATCTGGACGGTAAGGACGCTCCTCCTCTCCAGCTAGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCGCGTCACCACCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATGTCAGTTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

125

Amino Acids

13.5

Weight (kDa)

10.33

Isoelectric Point (pI)

90.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 8 cut(s) 7, 12, 30, 53, 84, 102, 194, 279
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 2 cut(s) 37, 99
AfiI CCNNNNNNNGG 2 cut(s) 80, 143
AgsI TTSAA 1 cut(s) 350
AhdI GACNNNNNGTC 1 cut(s) 255
AluBI AGCT 3 cut(s) 124, 238, 242
AluI AGCT 3 cut(s) 124, 238, 242
Alw26I GTCTC 2 cut(s) 100, 105
AlwI GGATC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 4 cut(s) 8, 37, 99, 134
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 55, 128
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 4 cut(s) 9, 71, 134, 135
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 276
AsuNHI GCTAGC 1 cut(s) 238
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 67, 115
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 100, 105
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 73
BglII AGATCT 1 cut(s) 199
BisI GCNGC 7 cut(s) 8, 56, 85, 102, 129, 194, 279
BlsI GCNGC 7 cut(s) 9, 57, 86, 103, 130, 195, 280
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 71
BmeRI GACNNNNNGTC 1 cut(s) 255
BmgT120I GGNCC 4 cut(s) 9, 71, 134, 135
BmiI GGNNCC 3 cut(s) 63, 136, 137
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 242
BpmI CTGGAG 2 cut(s) 36, 218
BpuMI CCSGG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 143
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 80, 143
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 3 cut(s) 216, 219, 292
BseSI GKGCMC 1 cut(s) 138
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 67, 115
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 3 cut(s) 53, 80, 102
BshFI GGCC 4 cut(s) 10, 39, 101, 136
BsiEI CGRYCG 3 cut(s) 53, 80, 102
BsiSI CCGG 4 cut(s) 59, 142, 247, 306
BslI CCNNNNNNNGG 2 cut(s) 80, 143
BsmAI GTCTC 2 cut(s) 100, 105
BsmBI CGTCTC 2 cut(s) 100, 105
BsnI GGCC 4 cut(s) 10, 39, 101, 136
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 5 cut(s) 19, 77, 170, 199, 253
BspACI CCGC 8 cut(s) 7, 12, 30, 53, 84, 102, 194, 279
BspANI GGCC 4 cut(s) 10, 39, 101, 136
BspCNI CTCAG 1 cut(s) 368
BspEI TCCGGA 1 cut(s) 305
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 3 cut(s) 63, 136, 137
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 5 cut(s) 19, 77, 170, 199, 253
Bst4CI ACNGT 2 cut(s) 215, 275
BstC8I GCNNGC 4 cut(s) 12, 126, 240, 244
BstDEI CTNAG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 5 cut(s) 22, 80, 173, 202, 256
BstMAI GTCTC 2 cut(s) 100, 105
BstMBI GATC 5 cut(s) 19, 77, 170, 199, 253
BstMCI CGRYCG 3 cut(s) 53, 80, 102
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 67, 115
BstX2I RGATCY 2 cut(s) 170, 199
BstYI RGATCY 2 cut(s) 170, 199
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 10, 39, 101, 136
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 12, 126, 240, 244
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 9, 71, 134, 135
CseI GACGC 4 cut(s) 122, 170, 230, 270
CviAII CATG 2 cut(s) 291, 341
DdeI CTNAG 1 cut(s) 355
DpnI GATC 5 cut(s) 21, 79, 172, 201, 255
DpnII GATC 5 cut(s) 19, 77, 170, 199, 253
DriI GACNNNNNGTC 1 cut(s) 255
EaeI YGGCCR 2 cut(s) 37, 99
EagI CGGCCG 1 cut(s) 99
Eam1105I GACNNNNNGTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 71, 135
EcoT38I GRGCYC 1 cut(s) 138
Esp3I CGTCTC 2 cut(s) 100, 105
FaeI CATG 2 cut(s) 294, 344
FaiI YATR 3 cut(s) 166, 292, 342
FatI CATG 2 cut(s) 290, 340
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 8, 56, 85, 102, 129, 194, 279
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 7 cut(s) 8, 56, 85, 102, 129, 194, 279
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 88
GluI GCNGC 7 cut(s) 8, 56, 85, 102, 129, 194, 279
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 36, 218
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 4 cut(s) 10, 39, 101, 136
HapII CCGG 4 cut(s) 59, 142, 247, 306
HgaI GACGC 4 cut(s) 122, 170, 230, 270
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 294, 344
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 33
HpaII CCGG 4 cut(s) 59, 142, 247, 306
HphI GGTGA 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 209, 269, 306
Hpy99I CGWCG 3 cut(s) 48, 51, 111
HpyCH4III ACNGT 2 cut(s) 215, 275
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 355
Hsp92II CATG 2 cut(s) 294, 344
HspAI GCGC 1 cut(s) 87
Kpn2I TCCGGA 1 cut(s) 305
Kzo9I GATC 5 cut(s) 19, 77, 170, 199, 253
LmnI GCTCC 2 cut(s) 146, 229
Lsp1109I GCAGC 2 cut(s) 67, 115
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 282
MalI GATC 5 cut(s) 21, 79, 172, 201, 255
MbiI CCGCTC 1 cut(s) 104
MboI GATC 5 cut(s) 19, 77, 170, 199, 253
MboII GAAGA 3 cut(s) 167, 170, 338
MflI RGATCY 2 cut(s) 170, 199
MhlI GDGCHC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 6 cut(s) 84, 237, 240, 270, 310, 313
MroI TCCGGA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 4 cut(s) 59, 142, 247, 306
MspR9I CCNGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 143
NdeII GATC 5 cut(s) 19, 77, 170, 199, 253
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 2 cut(s) 294, 344
NlaIV GGNNCC 3 cut(s) 63, 136, 137
NmeAIII GCCGAG 2 cut(s) 15, 77
NmuCI GTSAC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 2 cut(s) 262, 271
PkrI GCNGC 7 cut(s) 9, 57, 86, 103, 130, 195, 280
Ple19I CGATCG 1 cut(s) 80
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 3 cut(s) 63, 136, 137
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 4 cut(s) 9, 71, 134, 135
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 170, 199
PvuI CGATCG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 289
SatI GCNGC 7 cut(s) 8, 56, 85, 102, 129, 194, 279
Sau3AI GATC 5 cut(s) 19, 77, 170, 199, 253
Sau96I GGNCC 4 cut(s) 9, 71, 134, 135
SbfI CCTGCAGG 1 cut(s) 70
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 143
SdaI CCTGCAGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 67, 76, 126, 240, 244
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse8387I CCTGCAGG 1 cut(s) 70
SsiI CCGC 8 cut(s) 7, 12, 30, 53, 84, 102, 194, 279
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 215, 275
TaqI TCGA 2 cut(s) 76, 106
TauI GCSGC 5 cut(s) 10, 87, 104, 196, 281
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 2 cut(s) 55, 128
Tsp45I GTSAC 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 71
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.