Rroxscaffold_1G00056410

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010003
Physical Location & Seq
Reverse (-)
78174834 .. 78179229
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056410.1

Sequence Viewer

Length: 2592 bp
ATGTGGGTTCCTTCAATTACACTGAGTTTTCCCAGAAAGCTCATTCAATCACCAAGAACTAATCTCAACCATTTTAAGCTCATCAATTGGTTTTCAAGTTGCTCACTTTCTGATGATGATAATGATTTTTGCACTACAAACTCTAACACAAGCACCCAAGAGGTTTATGGTGGTGGGATTGTGTGTGGTTTCAAGTGGGCATCGCCGCAGCAACCGGCTATTGCCCACTGTCATTCAAGGCCTTCTGAGTCTGGTGGTATTAGTTCAGTTACTGACTGCAGAACAGACATTACCAATGCCAAGGGGAACCGTTTGGTTGCGGACTTGGAGACGTCGGAGGTGGTTAACAAGCTCAACGGGTTTAAAAGCAAACCCAATTCGGCGTTTTCCTTGTTCCGCCAGTTGAAGGAAGAAGGGTTCCAGCACAATGTTTTGACATACTGTGCGCTTGTAAGGATATTGTGTTATTGGCGTTTGGATAGGAAGTTGGATTTTCTGTTCTTGGAGGTTATTAGTGGCGCTAGAGACGTTGGATTTCGATTATCAGATTTGTTGGAAGTGATGGAGGAGGAAATTGAGGTTTTCCCATCAATAGTTCGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGAGGCTAGTGATATTTTGTTCCATACCAAAAGGCGTAGATTTGTGCCGCATATCTTTACAGTTAATTTTCTTATGAATCGGTTGATTGAGCATGGTGAAGTGGGTGCGGCTTTGTCTATATACAAGCAGTTGAAGGGGATTGGTTTGGTCCCTAATGATTACACCTATGCAATTGTCATCAAGGGATTTTGTAAGGAGGGTAGGTTGGAAGAGGCTGGGCAAGTGTTTGAGGAGATGGAGTTAGCTGGGGTAGCCCCTAGCGTGTTTGCCTACACAGCATATATTGAAGGACTTTGCAACAAGGGGCGTTCTGATGTAGGATGTCAAGTGCTCCAATATTGCAAAAGTGAAAATATCCTTCTTGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAGGTGAAATTTGATGAAGCAGAAAGTCTCTTTTTTGACATGGAAAAGCAAGGCATTGTGCCTGATTCATGCATCTATAGTGCAATGATCAGTGGCTACTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGTGTGATTATTGGTTTTATTCTTCAGTGCCTCTGTAAGATTGGAATGCCTTCTGATGCTGTGGATCAATTCATAGAATTTAAGGGCATGGGGATATATCTTGATGAGGTTACCTACAATATTGCGGTTGATGCTTTATGCACACTGCGGAGAGTGGAAGAAGCCTCCGAATTGCTGGAAGAGATGAAGCTTAAGCATATGAGCTTAGATACTATGCATTACACCACATTGATTAAAGGGTACTGTCTCCAAGGGAAAGTTGTTGATGCCACGAATCTTTTGGAGGAAATGTATGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTTCTAGAAATGGACTGGTATCTAAGGCGCTTGGCCTTTTGGTTTATATGGAGGCACAGGGTTTTAAACCGGACTCTGTTACACACAGCATGGTAATTGAGAATCTCTGCATAGGAGGAAAAGTCAAAGAAGCTGAAGCATTTTTAAATAATTTGGTAGATAAGAGTGAAGAGACCTACACTGCTCTGATCCGTGGATACTGTGAAGCTAACAATACAAGGAAGGCCTATGAACTTATTTCTAGGCTGGCAAAGCAGGGAGCCATTAACAAAGGTGCTTGCTTTAAAGTAGTCAGTAACCTTTGCATGGAAGGTGATAATGACAGTGCTATCTTGTTGTTTGAGAGAATGTTCGCCTTAAATGTGGAACCTAAGAGAATTATGTACAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGCAAAAGGCCCGCCTGTTTTTTGATTCTTCAGTTGTGAGAGGGTTTACTCCTGATGTCATTGACTACACAGTGATGATAAATAGCTACTGCAGGGGGAATTCTTTGCAGGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTGGATGGATTTTCAAAAAGAAACATAGGAAGGGCTCGTTCCCCTCTAGATGCAAGGGGAAATAGGGAAGAAATGGCGGATGCTTCTACTATACTTTGGACTGAGATGAAGGAAATGGGAATAAGACCTGATGCCATTTGTTATACCGTTTTGATAGACAGGCATTGTAAAACAGACAACCTTCAGGATGCTATTGCACTCTTTGACTTGATGATTGACAGAGGATTAAAACCTGATACAGTGACGTACACAGCTCTTCTGTCTGGCTATTGTAATAGAAGAGACGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCGTCGAAGGGAATACAGCCAGATGCCTGCACACTGTCGGTTCTACAGCATGGAATCTTAAAAGCCAAAAAGTGCAGTTTCGGAAATAAGAACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

863

Amino Acids

96.68

Weight (kDa)

5.95

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 232 - 281 9.3e-11 PPR repeat family
PPR_1 PF12854 264 - 296 5.4e-12 PPR repeat
PPR PF01535 270 - 300 1.3e-06 PPR repeat
PPR_2 PF13041 274 - 316 8.1e-11 PPR repeat family
PPR_2 PF13041 302 - 351 1.7e-07 PPR repeat family
PPR_2 PF13041 338 - 386 1.7e-10 PPR repeat family
PPR_1 PF12854 369 - 401 6.1e-07 PPR repeat
PPR_2 PF13041 372 - 409 1.9e-07 PPR repeat family
PPR PF01535 376 - 405 1.2e-06 PPR repeat
PPR_2 PF13041 414 - 455 2.9e-06 PPR repeat family
PPR_1 PF12854 438 - 471 4.1e-08 PPR repeat
PPR_3 PF13812 466 - 520 7.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 505 5e-09 PPR repeat
PPR_2 PF13041 478 - 525 6.3e-13 PPR repeat family
PPR_3 PF13812 501 - 557 6.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 508 - 541 2.4e-06 PPR repeat
PPR_2 PF13041 513 - 560 2.5e-09 PPR repeat family
PPR_2 PF13041 650 - 696 1.3e-06 PPR repeat family
PPR_3 PF13812 675 - 730 3.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 678 - 711 3.9e-08 PPR repeat
PPR_2 PF13041 682 - 731 1e-17 PPR repeat family
PPR_long PF17177 686 - 845 7.7e-09 Pentacotripeptide-repeat region of PRORP
PPR PF01535 687 - 715 2.4e-07 PPR repeat
PPR_1 PF12854 764 - 796 1.2e-06 PPR repeat
PPR_2 PF13041 768 - 817 2.7e-15 PPR repeat family
PPR_3 PF13812 792 - 846 2.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 799 - 832 2e-11 PPR repeat
PPR_2 PF13041 803 - 849 1e-13 PPR repeat family
PPR PF01535 806 - 836 1.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 335
AciI CCGC 9 cut(s) 206, 320, 397, 695, 755, 1349, 1372, 2005, 2252
AclWI GGATC 2 cut(s) 1296, 1753
AcsI RAATTY 3 cut(s) 1061, 1301, 2092
AcuI CTGAAG 4 cut(s) 1232, 1725, 2007, 2342
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 3 cut(s) 1466, 1955, 2423
AfiI CCNNNNNNNGG 2 cut(s) 406, 1876
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 1201
AjiI CACGTC 1 cut(s) 2461
AjnI CCWGG 1 cut(s) 1980
AloI GAACNNNNNNTCC 4 cut(s) 401, 433, 482, 514
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 2451
AlwI GGATC 2 cut(s) 1296, 1753
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 4 cut(s) 239, 1603, 1794, 2001
ApeKI GCWGC 2 cut(s) 208, 1562
ApoI RAATTY 3 cut(s) 1061, 1301, 2092
Asp700I GAANNNNTTC 1 cut(s) 1273
AspLEI GCGC 3 cut(s) 448, 521, 1600
AspS9I GGNCC 2 cut(s) 796, 2002
AsuHPI GGTGA 4 cut(s) 42, 755, 1069, 1895
AvaII GGWCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 2212
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 220, 1549
BccI CCATC 4 cut(s) 556, 595, 877, 2174
BciT130I CCWGG 1 cut(s) 1982
BciVI GTATCC 1 cut(s) 1760
BclI TGATCA 1 cut(s) 1140
BcoDI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 2451
BfaI CTAG 7 cut(s) 522, 654, 906, 1575, 1812, 2222, 2480
BfmI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2537
BfoI RGCGCY 2 cut(s) 522, 1601
BfrI CTTAAG 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1760
BisI GCNGC 5 cut(s) 206, 209, 695, 756, 1563
BlsI GCNGC 5 cut(s) 207, 210, 696, 757, 1564
Bme1390I CCNGG 1 cut(s) 1982
Bme18I GGWCC 1 cut(s) 796
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmgBI CACGTC 1 cut(s) 2461
BmgT120I GGNCC 2 cut(s) 796, 2002
BmiI GGNNCC 6 cut(s) 9, 308, 419, 798, 1831, 1938
BmrFI CCNGG 1 cut(s) 1982
BpmI CTGGAG 1 cut(s) 2007
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 1736
BsaJI CCNNGG 3 cut(s) 300, 1474, 1762
BsaWI WCCGGW 1 cut(s) 1639
BsaXI ACNNNNNCTCC 8 cut(s) 836, 866, 872, 902, 1499, 1529, 1677, 1707
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1876
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 400, 1590
Bse3DI GCAATG 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 1982
BseDI CCNNGG 3 cut(s) 300, 1474, 1762
BseGI GGATG 4 cut(s) 974, 2185, 2260, 2368
BseLI CCNNNNNNNGG 2 cut(s) 406, 1876
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 3 cut(s) 14, 237, 2268
BseNI ACTGG 2 cut(s) 400, 1590
BseRI GAGGAG 2 cut(s) 581, 893
BseXI GCAGC 2 cut(s) 220, 1549
BseYI CCCAGC 2 cut(s) 863, 893
BsgI GTGCAG 2 cut(s) 2506, 2587
BshFI GGCC 4 cut(s) 241, 1605, 1796, 2003
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 215, 1640
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 406, 1876
BsmAI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 2451
BsmBI CGTCTC 3 cut(s) 323, 519, 2451
BsmFI GGGAC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 4 cut(s) 241, 1605, 1796, 2003
Bso31I GGTCTC 1 cut(s) 1736
Bsp1286I GDGCHC 2 cut(s) 981, 2212
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 4 cut(s) 1140, 1288, 1758, 2113
BspACI CCGC 9 cut(s) 206, 320, 397, 695, 755, 1349, 1372, 2005, 2252
BspANI GGCC 4 cut(s) 241, 1605, 1796, 2003
BspCNI CTCAG 3 cut(s) 15, 238, 2269
BspLI GGNNCC 6 cut(s) 9, 308, 419, 798, 1831, 1938
BspMAI CTGCAG 3 cut(s) 281, 1567, 2087
BspPI GGATC 2 cut(s) 1296, 1753
BspQI GCTCTTC 1 cut(s) 2436
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 1 cut(s) 1736
BsrDI GCAATG 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 1953
BsrI ACTGG 2 cut(s) 400, 1590
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 300, 1474, 1762
BssMI GATC 4 cut(s) 1140, 1288, 1758, 2113
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 300, 1474
Bst2UI CCWGG 1 cut(s) 1982
Bst6I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
BstACI GRCGYC 1 cut(s) 332
BstAFI CTTAAG 1 cut(s) 1415
BstAUI TGTACA 1 cut(s) 1953
BstC8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2521
BstDEI CTNAG 6 cut(s) 23, 246, 1429, 1593, 1941, 2277
BstDSI CCRYGG 1 cut(s) 1762
BstEII GGTNACC 1 cut(s) 1333
BstF5I GGATG 4 cut(s) 974, 2185, 2260, 2368
BstH2I RGCGCY 2 cut(s) 522, 1601
BstHHI GCGC 3 cut(s) 448, 521, 1600
BstKTI GATC 4 cut(s) 1143, 1291, 1761, 2116
BstMAI GTCTC 7 cut(s) 323, 519, 627, 1085, 1475, 1736, 2451
BstMBI GATC 4 cut(s) 1140, 1288, 1758, 2113
BstMWI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
BstNI CCWGG 1 cut(s) 1982
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 1333
BstSCI CCNGG 1 cut(s) 1980
BstSFI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2537
BstV1I GCAGC 2 cut(s) 220, 1549
BsuI GTATCC 1 cut(s) 1760
BsuRI GGCC 4 cut(s) 241, 1605, 1796, 2003
BtgI CCRYGG 1 cut(s) 1762
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 2461
BtsCI GGATG 4 cut(s) 974, 2185, 2260, 2368
BtsI GCAGTG 2 cut(s) 1367, 1749
Cac8I GCNNGC 4 cut(s) 1818, 1849, 2005, 2521
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 3 cut(s) 448, 521, 1600
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 796, 2002
Csp6I GTAC 3 cut(s) 1465, 1954, 2422
CviQI GTAC 3 cut(s) 1465, 1954, 2422
DdeI CTNAG 6 cut(s) 23, 246, 1429, 1593, 1941, 2277
DpnI GATC 4 cut(s) 1142, 1290, 1760, 2115
DpnII GATC 4 cut(s) 1140, 1288, 1758, 2113
DraI TTTAAA 4 cut(s) 364, 1636, 1716, 1855
DriI GACNNNNNGTC 1 cut(s) 1201
Eam1104I CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 6 cut(s) 852, 1398, 1734, 2123, 2436, 2449
EciI GGCGGA 2 cut(s) 386, 2267
Eco130I CCWWGG 2 cut(s) 300, 1474
Eco147I AGGCCT 2 cut(s) 241, 1796
Eco24I GRGCYC 1 cut(s) 2212
Eco31I GGTCTC 1 cut(s) 1736
Eco32I GATATC 1 cut(s) 2155
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 4 cut(s) 1232, 1725, 2007, 2342
Eco91I GGTNACC 1 cut(s) 1333
EcoO65I GGTNACC 1 cut(s) 1333
EcoRI GAATTC 1 cut(s) 2092
EcoRII CCWGG 1 cut(s) 1980
EcoRV GATATC 1 cut(s) 2155
EcoT14I CCWWGG 2 cut(s) 300, 1474
EcoT22I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
EcoT38I GRGCYC 1 cut(s) 2212
ErhI CCWWGG 2 cut(s) 300, 1474
Esp3I CGTCTC 3 cut(s) 323, 519, 2451
FaqI GGGAC 1 cut(s) 782
FauI CCCGC 1 cut(s) 2012
FauNDI CATATG 1 cut(s) 1422
FbaI TGATCA 1 cut(s) 1140
Fnu4HI GCNGC 5 cut(s) 206, 209, 695, 756, 1563
FokI GGATG 4 cut(s) 981, 2192, 2267, 2375
FriOI GRGCYC 1 cut(s) 2212
Fsp4HI GCNGC 5 cut(s) 206, 209, 695, 756, 1563
FspBI CTAG 7 cut(s) 522, 654, 906, 1575, 1812, 2222, 2480
GlaI GCGC 3 cut(s) 447, 520, 1599
GluI GCNGC 5 cut(s) 206, 209, 695, 756, 1563
GsaI CCCAGC 2 cut(s) 867, 897
GsuI CTGGAG 1 cut(s) 2007
HaeII RGCGCY 2 cut(s) 522, 1601
HaeIII GGCC 4 cut(s) 241, 1605, 1796, 2003
HapII CCGG 2 cut(s) 215, 1640
HhaI GCGC 3 cut(s) 448, 521, 1600
Hin1I GRCGYC 1 cut(s) 332
Hin6I GCGC 3 cut(s) 446, 519, 1598
HinP1I GCGC 3 cut(s) 446, 519, 1598
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 1412
HinfI GANTC 9 cut(s) 248, 724, 1118, 1498, 1643, 1672, 2018, 2143, 2547
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 215, 1640
HphI GGTGA 4 cut(s) 42, 755, 1069, 1895
Hpy166II GTNNAC 3 cut(s) 346, 2040, 2424
Hpy188I TCNGA 9 cut(s) 112, 247, 337, 547, 961, 1279, 1393, 1758, 2576
Hpy188III TCNNGA 6 cut(s) 1010, 1325, 1575, 2045, 2222, 2360
Hpy8I GTNNAC 3 cut(s) 346, 2040, 2424
Hpy99I CGWCG 2 cut(s) 337, 2500
HpyCH4IV ACGT 4 cut(s) 332, 528, 2420, 2460
HpyF10VI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
HpyF3I CTNAG 6 cut(s) 23, 246, 1429, 1593, 1941, 2277
HpySE526I ACGT 4 cut(s) 332, 528, 2420, 2460
Hsp92I GRCGYC 1 cut(s) 332
HspAI GCGC 3 cut(s) 446, 519, 1598
Ksp22I TGATCA 1 cut(s) 1140
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 4 cut(s) 1140, 1288, 1758, 2113
LguI GCTCTTC 1 cut(s) 2436
LmnI GCTCC 2 cut(s) 984, 1829
Lsp1109I GCAGC 2 cut(s) 220, 1549
MaeI CTAG 7 cut(s) 522, 654, 906, 1575, 1812, 2222, 2480
MaeII ACGT 4 cut(s) 332, 528, 2420, 2460
MaeIII GTNAC 6 cut(s) 268, 1333, 1648, 1865, 2416, 2473
MalI GATC 4 cut(s) 1142, 1290, 1760, 2115
MboI GATC 4 cut(s) 1140, 1288, 1758, 2113
MfeI CAATTG 2 cut(s) 85, 819
MhlI GDGCHC 2 cut(s) 981, 2212
MlyI GAGTC 2 cut(s) 257, 1637
MmeI TCCRAC 5 cut(s) 315, 468, 511, 534, 834
Mph1103I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
MroXI GAANNNNTTC 1 cut(s) 1273
MslI CAYNNNNRTG 1 cut(s) 2066
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 2 cut(s) 215, 1640
MspR9I CCNGG 1 cut(s) 1982
MunI CAATTG 2 cut(s) 85, 819
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 1982
MwoI GCNNNNNNNGC 5 cut(s) 899, 923, 1028, 1355, 1822
NdeI CATATG 1 cut(s) 1422
NdeII GATC 4 cut(s) 1140, 1288, 1758, 2113
NlaIV GGNNCC 6 cut(s) 9, 308, 419, 798, 1831, 1938
NmuCI GTSAC 1 cut(s) 2416
NsiI ATGCAT 4 cut(s) 613, 1024, 1127, 1443
NspI RCATGY 1 cut(s) 643
PceI AGGCCT 2 cut(s) 241, 1796
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 2436
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 1273
PfeI GAWTC 7 cut(s) 724, 1118, 1498, 1672, 2018, 2143, 2547
PkrI GCNGC 5 cut(s) 207, 210, 696, 757, 1564
PleI GAGTC 2 cut(s) 256, 1637
PpsI GAGTC 2 cut(s) 256, 1637
PscI ACATGT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 1980
PspEI GGTNACC 1 cut(s) 1333
PspFI CCCAGC 2 cut(s) 863, 893
PspGI CCWGG 1 cut(s) 1980
PspN4I GGNNCC 6 cut(s) 9, 308, 419, 798, 1831, 1938
PspPI GGNCC 2 cut(s) 796, 2002
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstI CTGCAG 3 cut(s) 281, 1567, 2087
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 1466, 1955, 2423
RsaNI GTAC 3 cut(s) 1465, 1954, 2422
RseI CAYNNNNRTG 1 cut(s) 2066
SapI GCTCTTC 1 cut(s) 2436
SatI GCNGC 5 cut(s) 206, 209, 695, 756, 1563
Sau3AI GATC 4 cut(s) 1140, 1288, 1758, 2113
Sau96I GGNCC 2 cut(s) 796, 2002
SchI GAGTC 2 cut(s) 257, 1637
ScrFI CCNGG 1 cut(s) 1982
SduI GDGCHC 2 cut(s) 981, 2212
SfcI CTRYAG 5 cut(s) 277, 1129, 1563, 2083, 2537
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 2066
SmlI CTYRAG 1 cut(s) 1415
SmoI CTYRAG 1 cut(s) 1415
SseBI AGGCCT 2 cut(s) 241, 1796
SsiI CCGC 9 cut(s) 206, 320, 397, 695, 755, 1349, 1372, 2005, 2252
SspI AATATT 2 cut(s) 986, 1345
SspMI CTAG 7 cut(s) 522, 654, 906, 1575, 1812, 2222, 2480
StuI AGGCCT 2 cut(s) 241, 1796
StyD4I CCNGG 1 cut(s) 1980
StyI CCWWGG 2 cut(s) 300, 1474
TaiI ACGT 4 cut(s) 335, 531, 2423, 2463
TaqI TCGA 2 cut(s) 538, 2498
TatI WGTACW 1 cut(s) 1953
TauI GCSGC 3 cut(s) 208, 697, 758
TfiI GAWTC 7 cut(s) 724, 1118, 1498, 1672, 2018, 2143, 2547
TseFI GTSAC 1 cut(s) 2416
TseI GCWGC 2 cut(s) 208, 1562
Tsp45I GTSAC 1 cut(s) 2416
TspDTI ATGAA 8 cut(s) 737, 1083, 1110, 1285, 1424, 1815, 2144, 2297
TspGWI ACGGA 1 cut(s) 1751
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 3 cut(s) 1061, 1301, 2092
XbaI TCTAGA 2 cut(s) 1574, 2221
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 1501
XmnI GAANNNNTTC 1 cut(s) 1273
XspI CTAG 7 cut(s) 522, 654, 906, 1575, 1812, 2222, 2480
ZraI GACGTC 1 cut(s) 333
Zsp2I ATGCAT 4 cut(s) 613, 1024, 1127, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.