Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Forward (+)

5042240 .. 5045556

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14685.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATGACGATGGGTTTCGTAATTGGGGTTACTATGAACCAGCTGCTGCTACCTTTAAAGGTAATCTCGGTTTGCAGCTAATGTCTACCATTGATCGGAACACTAAACCGTTTTTACCTGGGCGGGATCCGAATCTAATGATGGGGCCTAACGGGTCATATCACCACCAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAACAGAAGGATAAGTTCTTCAATATGTTGCCTGTTACAACAGCCACTCCTAACTACGGTAATGTCCTTCCCGAAACTTCGTCTGCTCCGTCGATGCAGATGAATCTCCATCATCATCTTCAAACCGAGGAGAATCCGGTTAAGTTGGAAGAAGAGATTGTTGTTCAGACTAAGAAGAGAAAGACCAATGCAAAAGCTGGCTCGACTCCAAAGGCTAAGAAGCCAAGGAAACCAAAGGATGAGAACAGTAACAACAACAACAACAACAACACGAATGTTACTCGAGTTAAACCCGCTAAGAAAAGTGTTGACTTGGTGATCAATGGAGTGAGTATGGACATTTCGGGTCTTCCTGTTCCTATCTGCACTTGCACTGGAGCTCCTCAGCAATGCTACCGTTGGGGATGTGGCGGTTGGCAGTCTGCTTGTTGTACCACAAACATCTCAATGCATCCATTACCAATGAGTACTAAACGCCGTGGAGCGAGGATCTCGGGAAGGAAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAACTTGCTTCTGATGGGTTTAACTTTGGGAATCCGATTGATCTTAAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTCACAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

279

Amino Acids

31.17

Weight (kDa)

9.7

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	2 - 279	7.7e-92	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	725
AciI	CCGC	3 cut(s)	124, 501, 618
AclWI	GGATC	3 cut(s)	122, 135, 704
AfaI	GTAC	2 cut(s)	640, 676
AfiI	CCNNNNNNNGG	3 cut(s)	96, 214, 263
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	2 cut(s)	229, 329
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	5 cut(s)	44, 79, 192, 404, 587
AluI	AGCT	5 cut(s)	44, 79, 192, 404, 587
Alw21I	GWGCWC	1 cut(s)	589
AlwI	GGATC	3 cut(s)	122, 135, 704
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	2 cut(s)	489, 700
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	44, 47, 76
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	155, 535
AvaI	CYCGRG	2 cut(s)	489, 700
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	31, 34, 88
BccI	CCATC	4 cut(s)	5, 136, 324, 752
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	788
BisI	GCNGC	3 cut(s)	45, 48, 77
BlsI	GCNGC	3 cut(s)	46, 49, 78
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	2 cut(s)	489, 700
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	129, 147
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	291, 667
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	119, 333, 431, 685
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 571, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 214, 263
Bse1I	ACTGG	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	119, 333, 431, 685
BseGI	GGATG	4 cut(s)	10, 451, 617, 658
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	96, 214, 263
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	350, 579
BseXI	GCAGC	3 cut(s)	31, 34, 88
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	589
BsiHKCI	CYCGRG	2 cut(s)	489, 700
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	96, 214, 263
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	2 cut(s)	489, 700
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	5 cut(s)	94, 127, 525, 696, 784
BspACI	CCGC	3 cut(s)	124, 501, 618
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	2 cut(s)	129, 147
BspPI	GGATC	3 cut(s)	122, 135, 704
BspTI	CTTAAG	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	4 cut(s)	119, 333, 431, 685
BssMI	GATC	5 cut(s)	94, 127, 525, 696, 784
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	111, 266, 455, 605
Bst6I	CTCTTC	2 cut(s)	354, 377
BstAFI	CTTAAG	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	4 cut(s)	378, 423, 504, 591
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	4 cut(s)	10, 451, 617, 658
BstFNI	CGCG	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	5 cut(s)	97, 130, 528, 699, 787
BstMBI	GATC	5 cut(s)	94, 127, 525, 696, 784
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	3 cut(s)	31, 34, 88
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	127, 696
BstYI	RGATCY	2 cut(s)	127, 696
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	4 cut(s)	10, 451, 617, 658
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	406
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	639, 675
CviAII	CATG	2 cut(s)	187, 809
CviQI	GTAC	2 cut(s)	639, 675
DdeI	CTNAG	4 cut(s)	378, 423, 504, 591
DpnI	GATC	5 cut(s)	96, 129, 527, 698, 786
DpnII	GATC	5 cut(s)	94, 127, 525, 696, 784
DraI	TTTAAA	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	354, 377
EarI	CTCTTC	2 cut(s)	354, 377
Ecl136II	GAGCTC	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	489, 700
EcoICRI	GAGCTC	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	2 cut(s)	190, 812
FaiI	YATR	6 cut(s)	36, 160, 188, 233, 542, 810
FatI	CATG	2 cut(s)	186, 808
FauI	CCCGC	2 cut(s)	117, 508
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	45, 48, 77
FokI	GGATG	4 cut(s)	17, 458, 624, 645
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	45, 48, 77
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	3 cut(s)	45, 48, 77
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	2 cut(s)	190, 812
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	6 cut(s)	133, 310, 340, 412, 715, 775
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	155, 535
Hpy166II	GTNNAC	2 cut(s)	87, 517
Hpy188I	TCNGA	6 cut(s)	99, 132, 375, 757, 780, 836
Hpy188III	TCNNGA	3 cut(s)	278, 702, 740
Hpy8I	GTNNAC	2 cut(s)	87, 517
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	208, 284, 699, 727
HpyCH4III	ACNGT	4 cut(s)	111, 266, 455, 605
HpyCH4V	TGCA	6 cut(s)	76, 304, 398, 573, 579, 658
HpyF3I	CTNAG	4 cut(s)	378, 423, 504, 591
Hsp92II	CATG	2 cut(s)	190, 812
HspAI	GCGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	94, 127, 525, 696, 784
LmnI	GCTCC	4 cut(s)	298, 584, 592, 689
LpnPI	CCDG	8 cut(s)	54, 105, 132, 252, 357, 390, 567, 573
Lsp1109I	GCAGC	3 cut(s)	31, 34, 88
LweI	GCATC	2 cut(s)	291, 667
MaeIII	GTNAC	5 cut(s)	29, 241, 455, 484, 826
MalI	GATC	5 cut(s)	96, 129, 527, 698, 786
MboI	GATC	5 cut(s)	94, 127, 525, 696, 784
MboII	GAAGA	7 cut(s)	217, 317, 368, 371, 394, 548, 721
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	2 cut(s)	127, 696
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	2 cut(s)	22, 196
MlyI	GAGTC	2 cut(s)	406, 724
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	4 cut(s)	186, 328, 600, 687
Mph1103I	ATGCAT	1 cut(s)	660
MseI	TTAA	7 cut(s)	57, 204, 348, 495, 729, 765, 789
MslI	CAYNNNNRTG	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	725
NdeII	GATC	5 cut(s)	94, 127, 525, 696, 784
NlaIII	CATG	2 cut(s)	190, 812
NlaIV	GGNNCC	2 cut(s)	129, 147
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	133, 310, 340, 775
PkrI	GCNGC	3 cut(s)	46, 49, 78
PleI	GAGTC	2 cut(s)	406, 723
PpsI	GAGTC	2 cut(s)	406, 723
Psp124BI	GAGCTC	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	129, 147
PspPI	GGNCC	1 cut(s)	146
PspXI	VCTCGAGB	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	127, 696
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	640, 676
RsaNI	GTAC	2 cut(s)	639, 675
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	589
SaqAI	TTAA	7 cut(s)	57, 204, 348, 495, 729, 765, 789
SatI	GCNGC	3 cut(s)	45, 48, 77
Sau3AI	GATC	5 cut(s)	94, 127, 525, 696, 784
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	2 cut(s)	406, 724
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	589
SetI	ASST	9 cut(s)	46, 56, 64, 81, 121, 194, 406, 589, 738
SfaNI	GCATC	2 cut(s)	291, 667
Sfr274I	CTCGAG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	3 cut(s)	489, 740, 788
SmoI	CTYRAG	3 cut(s)	489, 740, 788
Sse9I	AATT	2 cut(s)	22, 196
SsiI	CCGC	3 cut(s)	124, 501, 618
SstI	GAGCTC	1 cut(s)	589
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	4 cut(s)	111, 266, 455, 605
TaqI	TCGA	3 cut(s)	299, 410, 490
TasI	AATT	2 cut(s)	22, 196
TatI	WGTACW	1 cut(s)	674
TfiI	GAWTC	4 cut(s)	133, 310, 340, 775
Tru1I	TTAA	7 cut(s)	57, 204, 348, 495, 729, 765, 789
Tru9I	TTAA	7 cut(s)	57, 204, 348, 495, 729, 765, 789
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	44, 47, 76
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	2 cut(s)	51, 323
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	586
Vha464I	CTTAAG	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.