Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Forward (+)

33683 .. 34528

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggatgatgattcattgaacatgcccaattggggatactatgaggcctcttttaaaggccatcttggcctgcagcttatgacaagcatgggtgagcgtgacacgaaaccttttatacctgggcgtgatcctccggtcatggttagcgccaatggatatcatcctcgggattgtgttgtacaggatgctcctgttccaatgagcaactatatgagggagagttggattaaccagagggataagtttctcactatgatgccggccaatcctaattatggtgttcttccggaaacttcagtcgctcagcactccatgcagatcttacagccacctcctgatgcatcaagggatgagagggtgaatagaatggaagagccagttgtccataaggaaggtggtggcccttcaaagaaaaggcagaatggtggtgccccgaaagccccaaaggtgaagaagccgaggaagccaaaggacaatagcaaccctgcggttccacgtgtgaagcccgcaaaaaagagtttggatgttgtcataaacgggattaccatggacatttcaggcattccaattccagtttgctcatgtactggagctccccaacagtgttatcggtgggggtgtggtggttggcaatccgcttgttgcactacaaatgtgtctatgtatcctttgccaatgagcactaaacggcggggtgctaggatagctggaagaaaaatgagtcagggggcttttaaaaaggtattggagaagcttgcagctgaaggttataactttgctaatccaattgatttgaggactcactgggcaagacatggtacaaataagttcgtcacaatcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

281

Amino Acids

31.19

Weight (kDa)

9.66

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	4 cut(s)	488, 507, 636, 691
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	279, 783
AcvI	CACGTG	1 cut(s)	497
AfaI	GTAC	3 cut(s)	180, 586, 820
AfiI	CCNNNNNNNGG	2 cut(s)	32, 275
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	19, 408
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	5 cut(s)	76, 593, 707, 754, 761
AluI	AGCT	5 cut(s)	76, 593, 707, 754, 761
Alw21I	GWGCWC	2 cut(s)	595, 683
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	5 cut(s)	45, 58, 67, 261, 400
ApeKI	GCWGC	2 cut(s)	73, 758
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	104, 370, 460
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	595
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	595, 683
BbvI	GCAGC	2 cut(s)	85, 770
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	2 cut(s)	29, 675
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	29, 675
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	2 cut(s)	74, 759
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	75, 760
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	430, 492
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	814
BmsI	GCATC	4 cut(s)	175, 246, 328, 350
BmuI	ACTGGG	1 cut(s)	814
BpmI	CTGGAG	1 cut(s)	609
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	497
BsaJI	CCNNGG	4 cut(s)	119, 164, 458, 546
BsaWI	WCCGGW	2 cut(s)	133, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 275
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	4 cut(s)	377, 572, 592, 809
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	119, 164, 458, 546
BseGI	GGATG	5 cut(s)	10, 160, 190, 355, 529
BseLI	CCNNNNNNNGG	2 cut(s)	32, 275
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	4 cut(s)	377, 572, 592, 809
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	85, 770
BshFI	GGCC	5 cut(s)	47, 60, 69, 263, 402
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	595, 683
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	134, 260, 287
BslI	CCNNNNNNNGG	2 cut(s)	32, 275
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	5 cut(s)	47, 60, 69, 263, 402
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	433, 595, 683
Bsp13I	TCCGGA	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	127, 318
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	4 cut(s)	488, 507, 636, 691
BspANI	GGCC	5 cut(s)	47, 60, 69, 263, 402
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	430, 492
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	377, 572, 592, 809
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	119, 164, 458, 546
BssMI	GATC	2 cut(s)	127, 318
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	71, 261, 507, 756
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	5 cut(s)	10, 160, 190, 355, 529
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	130, 321
BstMBI	GATC	2 cut(s)	127, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 313, 437, 463, 704
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	85, 770
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	29, 675
BsuRI	GGCC	5 cut(s)	47, 60, 69, 263, 402
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	5 cut(s)	10, 160, 190, 355, 529
BtsIMutI	CAGTG	2 cut(s)	608, 802
Cac8I	GCNNGC	4 cut(s)	71, 261, 507, 756
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	3 cut(s)	179, 585, 819
CviAII	CATG	7 cut(s)	22, 88, 139, 313, 547, 582, 815
CviQI	GTAC	3 cut(s)	179, 585, 819
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	129, 320
DpnII	GATC	2 cut(s)	127, 318
DraI	TTTAAA	2 cut(s)	55, 736
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	279, 783
Eco72I	CACGTG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	7 cut(s)	25, 91, 142, 316, 550, 585, 818
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	7 cut(s)	21, 87, 138, 312, 546, 581, 814
FauI	CCCGC	2 cut(s)	514, 684
Fnu4HI	GCNGC	2 cut(s)	74, 759
FokI	GGATG	5 cut(s)	17, 147, 197, 362, 536
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	74, 759
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	74, 759
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	47, 60, 69, 263, 402
HapII	CCGG	3 cut(s)	134, 260, 287
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	7 cut(s)	25, 91, 142, 316, 550, 585, 818
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	3 cut(s)	11, 721, 799
HpaII	CCGG	3 cut(s)	134, 260, 287
HphI	GGTGA	3 cut(s)	104, 370, 460
Hpy188III	TCNNGA	3 cut(s)	167, 287, 335
HpyAV	CCTTC	3 cut(s)	386, 414, 758
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	5 cut(s)	73, 316, 341, 645, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 313, 437, 463, 704
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	7 cut(s)	25, 91, 142, 316, 550, 585, 818
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	127, 318
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	3 cut(s)	193, 590, 598
Lsp1109I	GCAGC	2 cut(s)	85, 770
LweI	GCATC	4 cut(s)	175, 246, 328, 350
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	98, 832
MalI	GATC	2 cut(s)	129, 320
MboI	GATC	2 cut(s)	127, 318
MboII	GAAGA	4 cut(s)	275, 383, 463, 723
MfeI	CAATTG	2 cut(s)	28, 786
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	3 cut(s)	433, 595, 683
MluCI	AATT	4 cut(s)	28, 271, 567, 786
MlyI	GAGTC	2 cut(s)	730, 793
MmeI	TCCRAC	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	3 cut(s)	54, 228, 735
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	3 cut(s)	134, 260, 287
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	2 cut(s)	28, 786
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	66, 313, 437, 463, 704
NaeI	GCCGGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	127, 318
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	7 cut(s)	25, 91, 142, 316, 550, 585, 818
NlaIV	GGNNCC	2 cut(s)	430, 492
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	98, 832
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	561
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	75, 760
PleI	GAGTC	2 cut(s)	729, 793
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
PpsI	GAGTC	2 cut(s)	729, 793
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	430, 492
PspPI	GGNCC	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	3 cut(s)	180, 586, 820
RsaNI	GTAC	3 cut(s)	179, 585, 819
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	54, 228, 735
SatI	GCNGC	2 cut(s)	74, 759
Sau3AI	GATC	2 cut(s)	127, 318
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	730, 793
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	3 cut(s)	433, 595, 683
SfaNI	GCATC	4 cut(s)	175, 246, 328, 350
SfcI	CTRYAG	1 cut(s)	71
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	28, 271, 567, 786
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	488, 507, 636, 691
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	1 cut(s)	595
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	1 cut(s)	499
TasI	AATT	4 cut(s)	28, 271, 567, 786
TatI	WGTACW	2 cut(s)	178, 584
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	54, 228, 735
Tru9I	TTAA	3 cut(s)	54, 228, 735
TscAI	CASTG	2 cut(s)	608, 809
TseFI	GTSAC	2 cut(s)	98, 832
TseI	GCWGC	2 cut(s)	73, 758
Tsp45I	GTSAC	2 cut(s)	98, 832
TspRI	CASTG	2 cut(s)	608, 809
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.