Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Reverse (-)

31877949 .. 31880177

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G338500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATGATGATGCATTGAACATGCGCAATTGGGGCTATTATGAGCCGTCTTTTAAAGGCCATCTTGGCCTGCAGCTCATGTCAAGCATGGCAGAGCGCGACACAAAAGCTTTTGTCCCTGGGCGTGATCCCGCAGTCATGGTTAGCTCCAATGGAGCCTTTCATCCTCGGGATTGTGTTGTATCAGATGCTCCTGTTCCACTGAACTATATGAGGGACAGTTGGGTAAACCAGAGAGATAAGTTTCTCAATATGATGCCTGCCAATCCTAACTATGCTGTTCTGCCAGAAACTTCAGGAGCTCACTCCTTGCAGATCTTACAGCCACCTGATTCGTCAAGGGATGAGAGGGTGGCTAGAATAGAAGAGCCAGTTGCCAATAAGGAAGGTGGCCCATCAAAGAAAAGAGGCGGCGGGGGTGCACCAAAAACCCCAAAAGTGAAAAAGCCCAGGAAGCCAAAAGATAATAACAATCCTTCGGTTCCTCGTGTGAAGCCAGCAAAGAAGAGTTTGGATGTTGTGATAAACGGGATTAATATGGATATTTCAGGTATTCCAATTCCCGTCTGCTCATGCACTGGAGCTTCACAACAGTGTTATAGGTGGGGCTGTGGTGGTTGGCAATCTGCTTGTTGCACCACAAACGTATCTATGTACCCTTTGCCAATGAGTACTAAGCGACGTGGGGCGAGGATAGCTGGAAGGAAAATGAGTCAGGGTGCTTTCAAGAAGGTGTTGGAGAAGCTTGCAGCTGAAGGTTATAATTTTGCTAACCCAATTGATCTGAGGGGTCATTGGGCAAGACATGGTACCAACAAGTTCGTCACAATCAGAGATCTATCAGATACTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

285

Amino Acids

31.23

Weight (kDa)

9.62

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
Acc16I	TGCGCA	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	809
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	132, 411, 414
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	279, 774
AfaI	GTAC	3 cut(s)	656, 673, 811
AgsI	TTSAA	2 cut(s)	19, 727
AjiI	CACGTC	1 cut(s)	683
AjnI	CCWGG	2 cut(s)	118, 449
AleI	CACNNNNGTG	1 cut(s)	592
AluBI	AGCT	8 cut(s)	76, 110, 147, 302, 584, 698, 745, 752
AluI	AGCT	8 cut(s)	76, 110, 147, 302, 584, 698, 745, 752
Alw21I	GWGCWC	2 cut(s)	304, 424
Alw44I	GTGCAC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	3 cut(s)	58, 67, 391
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	73, 749
AseI	ATTAAT	1 cut(s)	534
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	2 cut(s)	27, 99
AspS9I	GGNCC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	304, 424
BbvI	GCAGC	2 cut(s)	85, 761
BccI	CCATC	2 cut(s)	69, 403
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	120, 451
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	2 cut(s)	315, 835
BisI	GCNGC	3 cut(s)	74, 412, 750
BlsI	GCNGC	3 cut(s)	75, 413, 751
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	120, 451
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	3 cut(s)	157, 483, 811
BmrFI	CCNGG	2 cut(s)	120, 451
BmsI	GCATC	2 cut(s)	178, 246
BpmI	CTGGAG	1 cut(s)	600
BsaJI	CCNNGG	4 cut(s)	118, 119, 167, 449
Bse1I	ACTGG	2 cut(s)	371, 583
BseBI	CCWGG	2 cut(s)	120, 451
BseDI	CCNNGG	4 cut(s)	118, 119, 167, 449
BseGI	GGATG	4 cut(s)	10, 163, 349, 520
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	2 cut(s)	371, 583
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	85, 761
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	60, 69, 393
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	2 cut(s)	304, 424
BsiHKCI	CYCGRG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	101, 230
BsmFI	GGGAC	2 cut(s)	101, 230
BsnI	GGCC	3 cut(s)	60, 69, 393
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	304, 424
Bsp143I	GATC	4 cut(s)	127, 315, 781, 835
BspACI	CCGC	3 cut(s)	132, 411, 414
BspANI	GGCC	3 cut(s)	60, 69, 393
BspCNI	CTCAG	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	157, 483, 811
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	809
BsrI	ACTGG	2 cut(s)	371, 583
BssECI	CCNNGG	4 cut(s)	118, 119, 167, 449
BssMI	GATC	4 cut(s)	127, 315, 781, 835
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	120, 451
Bst4CI	ACNGT	2 cut(s)	221, 594
Bst6I	CTCTTC	2 cut(s)	360, 500
BstC8I	GCNNGC	4 cut(s)	71, 261, 498, 747
BstDEI	CTNAG	2 cut(s)	675, 785
BstF5I	GGATG	4 cut(s)	10, 163, 349, 520
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	27, 99
BstKTI	GATC	4 cut(s)	130, 318, 784, 838
BstMBI	GATC	4 cut(s)	127, 315, 781, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 66, 454, 695
BstNI	CCWGG	2 cut(s)	120, 451
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	118, 449
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	85, 761
BstX2I	RGATCY	2 cut(s)	315, 835
BstYI	RGATCY	2 cut(s)	315, 835
BsuRI	GGCC	3 cut(s)	60, 69, 393
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	4 cut(s)	10, 163, 349, 520
BtsIMutI	CAGTG	3 cut(s)	200, 576, 599
Cac8I	GCNNGC	4 cut(s)	71, 261, 498, 747
CfoI	GCGC	2 cut(s)	27, 99
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	655, 672, 810
CviAII	CATG	6 cut(s)	22, 79, 88, 139, 573, 806
CviQI	GTAC	3 cut(s)	655, 672, 810
DdeI	CTNAG	2 cut(s)	675, 785
DpnI	GATC	4 cut(s)	129, 317, 783, 837
DpnII	GATC	4 cut(s)	127, 315, 781, 835
DraI	TTTAAA	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	360, 500
EarI	CTCTTC	2 cut(s)	360, 500
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	279, 774
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	118, 449
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	304
FaeI	CATG	6 cut(s)	25, 82, 91, 142, 576, 809
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	101, 230
FatI	CATG	6 cut(s)	21, 78, 87, 138, 572, 805
FauI	CCCGC	2 cut(s)	139, 407
Fnu4HI	GCNGC	3 cut(s)	74, 412, 750
FokI	GGATG	4 cut(s)	17, 150, 356, 527
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	74, 412, 750
FspBI	CTAG	1 cut(s)	357
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	2 cut(s)	26, 98
GluI	GCNGC	3 cut(s)	74, 412, 750
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	60, 69, 393
HhaI	GCGC	2 cut(s)	27, 99
Hin1II	CATG	6 cut(s)	25, 82, 91, 142, 576, 809
Hin6I	GCGC	2 cut(s)	25, 97
HinP1I	GCGC	2 cut(s)	25, 97
HindIII	AAGCTT	2 cut(s)	108, 743
HinfI	GANTC	2 cut(s)	332, 712
Hpy166II	GTNNAC	2 cut(s)	229, 422
Hpy188I	TCNGA	4 cut(s)	187, 786, 833, 844
Hpy188III	TCNNGA	3 cut(s)	170, 297, 727
Hpy8I	GTNNAC	2 cut(s)	229, 422
Hpy99I	CGWCG	1 cut(s)	684
HpyAV	CCTTC	5 cut(s)	380, 486, 696, 724, 749
HpyCH4III	ACNGT	2 cut(s)	221, 594
HpyCH4IV	ACGT	2 cut(s)	645, 682
HpyCH4V	TGCA	7 cut(s)	14, 73, 313, 422, 576, 636, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 66, 454, 695
HpyF3I	CTNAG	2 cut(s)	675, 785
HpySE526I	ACGT	2 cut(s)	645, 682
Hsp92II	CATG	6 cut(s)	25, 82, 91, 142, 576, 809
HspAI	GCGC	2 cut(s)	25, 97
KpnI	GGTACC	1 cut(s)	813
Kzo9I	GATC	4 cut(s)	127, 315, 781, 835
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	5 cut(s)	152, 155, 196, 299, 581
Lsp1109I	GCAGC	2 cut(s)	85, 761
LweI	GCATC	2 cut(s)	178, 246
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	645, 682
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	4 cut(s)	129, 317, 783, 837
MboI	GATC	4 cut(s)	127, 315, 781, 835
MboII	GAAGA	2 cut(s)	377, 517
MfeI	CAATTG	2 cut(s)	28, 777
MflI	RGATCY	2 cut(s)	315, 835
MhlI	GDGCHC	2 cut(s)	304, 424
MluCI	AATT	4 cut(s)	28, 558, 763, 777
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	7 cut(s)	177, 207, 342, 401, 495, 684, 780
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	2 cut(s)	54, 534
MslI	CAYNNNNRTG	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	120, 451
MunI	CAATTG	2 cut(s)	28, 777
MvaI	CCWGG	2 cut(s)	120, 451
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	33, 66, 454, 695
NdeII	GATC	4 cut(s)	127, 315, 781, 835
NlaIII	CATG	6 cut(s)	25, 82, 91, 142, 576, 809
NlaIV	GGNNCC	3 cut(s)	157, 483, 811
NmuCI	GTSAC	1 cut(s)	823
NsbI	TGCGCA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	592
PasI	CCCWGGG	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	75, 413, 751
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	118, 449
PspGI	CCWGG	2 cut(s)	118, 449
PspN4I	GGNNCC	3 cut(s)	157, 483, 811
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	315, 835
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	656, 673, 811
RsaNI	GTAC	3 cut(s)	655, 672, 810
RseI	CAYNNNNRTG	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	54, 534
SatI	GCNGC	3 cut(s)	74, 412, 750
Sau3AI	GATC	4 cut(s)	127, 315, 781, 835
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	120, 451
SduI	GDGCHC	2 cut(s)	304, 424
SfaNI	GCATC	2 cut(s)	178, 246
SfcI	CTRYAG	1 cut(s)	71
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	592
Sse9I	AATT	4 cut(s)	28, 558, 763, 777
SsiI	CCGC	3 cut(s)	132, 411, 414
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	118, 449
TaaI	ACNGT	2 cut(s)	221, 594
TaiI	ACGT	2 cut(s)	648, 685
TasI	AATT	4 cut(s)	28, 558, 763, 777
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	54, 534
Tru9I	TTAA	2 cut(s)	54, 534
TscAI	CASTG	3 cut(s)	207, 583, 599
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	2 cut(s)	73, 749
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	207, 583, 599
VneI	GTGCAC	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	534
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.