Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Forward (+)

976655 .. 978650

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1015100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCGCAATTGGGGCTACTATGAGCCATCTTTTAAGGGTCATCTTAGCTTGCAGCTCATGTCAAGCATGGCAGAGCGCGACACTAAACCATTTGTCCCTGGGCGTGACCCTACAGTCATGGTTAGCGCCAACGGAGCCTATCACCCTCGGGATTGTGTTGTATCAGATGCTCAGCTTCCAATGAACTATATGAGGGAGAGTTGGGTAAACCAGAGAGATAAGTTTCTCAATATGATGCCTGCCAATCCTAACTATGGGGCTGTTCTTCCAGAAACTTCAGGTGCCCATTCCTTGCAGATCTTACAGCCACCGGAACCATCAAGGGATGAGAGGGTGGGTAGGATCGAAGAGCCAGTTGTCCCTAAGGAAGTTGGCACATCCAAGAAAAGACAGGGTGGGGGTGCACCAAAAGCCCCAAAAGTGAAAAAGCCCAGGAAGGCAAAGGATAGTACCAATCCTTCAGTTCCTCGTGTGAAGCCAGCAAAGAAGAGTTTGGATGTTGTGATTAACGGGATTAATATGGATATCTCTGGAATTCCAATTCCCATCTGCTCATGCACTGGAGCTCCACAACAGTGTTATAGGTGGGGGTGTGGTGGTTGGCAATCTGCTTGTTGCACCACAAATGTATCTATGTATCCTCTGCCAATGAGCACTAAGCGACGCGGGGCAAGAATAGCTGGAAGAAAAATGAGTCAGGGTGCTTTCAAGAAGGTGTTGGAGAAGCTTGCAGCTGAAGGTTATAATTTTGCTAACCCAATTGATCTTAGGTTTCATTGGGCAAAACATGGTACCAACAAGTTCGTCACTCTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

273

Amino Acids

30.16

Weight (kDa)

9.87

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 272	5.6e-98	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AasI	GACNNNNNNGTC	1 cut(s)	113
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	791
AccB1I	GGYRCC	2 cut(s)	281, 791
AccII	CGCG	2 cut(s)	78, 666
AciI	CCGC	1 cut(s)	666
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	3 cut(s)	261, 444, 756
AfaI	GTAC	2 cut(s)	451, 793
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	97, 431
AleI	CACNNNNGTG	1 cut(s)	574
AluBI	AGCT	7 cut(s)	48, 55, 175, 566, 680, 727, 734
AluI	AGCT	7 cut(s)	48, 55, 175, 566, 680, 727, 734
Alw21I	GWGCWC	3 cut(s)	406, 568, 656
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	52, 731
ApoI	RAATTY	1 cut(s)	534
AseI	ATTAAT	1 cut(s)	516
Asp718I	GGTACC	1 cut(s)	791
AspLEI	GCGC	3 cut(s)	6, 78, 128
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	2 cut(s)	286, 406
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	2 cut(s)	281, 791
BanII	GRGCYC	1 cut(s)	568
BarI	GAAGNNNNNNTAC	2 cut(s)	442, 474
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	3 cut(s)	406, 568, 656
BbvI	GCAGC	2 cut(s)	64, 743
BccI	CCATC	3 cut(s)	34, 325, 554
BciT130I	CCWGG	2 cut(s)	99, 433
BciVI	GTATCC	1 cut(s)	648
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	648
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	2 cut(s)	53, 732
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	2 cut(s)	54, 733
Bme1390I	CCNGG	2 cut(s)	99, 433
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	4 cut(s)	136, 283, 315, 793
BmrFI	CCNGG	2 cut(s)	99, 433
BmsI	GCATC	2 cut(s)	157, 225
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	97, 98, 146, 431
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	353, 565
Bse21I	CCTNAGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	99, 433
BseDI	CCNNGG	4 cut(s)	97, 98, 146, 431
BseGI	GGATG	3 cut(s)	331, 377, 502
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	353, 565
BseSI	GKGCMC	2 cut(s)	286, 406
BseXI	GCAGC	2 cut(s)	64, 743
Bsh1236I	CGCG	2 cut(s)	78, 666
BshNI	GGYRCC	2 cut(s)	281, 791
BsiHKAI	GWGCWC	3 cut(s)	406, 568, 656
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	80, 344
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	80, 344
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	4 cut(s)	286, 406, 568, 656
Bsp143I	GATC	3 cut(s)	297, 342, 763
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	666
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	78, 666
BspLI	GGNNCC	4 cut(s)	136, 283, 315, 793
BspPI	GGATC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	281, 791
BsrI	ACTGG	2 cut(s)	353, 565
BssECI	CCNNGG	4 cut(s)	97, 98, 146, 431
BssMI	GATC	3 cut(s)	297, 342, 763
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	99, 433
Bst4CI	ACNGT	2 cut(s)	115, 576
Bst6I	CTCTTC	2 cut(s)	342, 482
BstC8I	GCNNGC	4 cut(s)	50, 240, 480, 729
BstDEI	CTNAG	6 cut(s)	44, 171, 363, 657, 767, 812
BstF5I	GGATG	3 cut(s)	331, 377, 502
BstFNI	CGCG	2 cut(s)	78, 666
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	3 cut(s)	6, 78, 128
BstKTI	GATC	3 cut(s)	300, 345, 766
BstMBI	GATC	3 cut(s)	297, 342, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 134, 410, 677
BstNI	CCWGG	2 cut(s)	99, 433
BstSCI	CCNGG	2 cut(s)	97, 431
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	2 cut(s)	286, 406
BstUI	CGCG	2 cut(s)	78, 666
BstV1I	GCAGC	2 cut(s)	64, 743
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	331, 377, 502
BtsIMutI	CAGTG	2 cut(s)	558, 581
Cac8I	GCNNGC	4 cut(s)	50, 240, 480, 729
CfoI	GCGC	3 cut(s)	6, 78, 128
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	450, 792
CviAII	CATG	5 cut(s)	58, 67, 118, 555, 788
CviQI	GTAC	2 cut(s)	450, 792
DdeI	CTNAG	6 cut(s)	44, 171, 363, 657, 767, 812
DpnI	GATC	3 cut(s)	299, 344, 765
DpnII	GATC	3 cut(s)	297, 342, 763
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	342, 482
EarI	CTCTTC	2 cut(s)	342, 482
Ecl136II	GAGCTC	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	566
Eco57I	CTGAAG	3 cut(s)	261, 444, 756
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	97, 431
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	568
FaeI	CATG	5 cut(s)	61, 70, 121, 558, 791
FaqI	GGGAC	2 cut(s)	80, 344
FatI	CATG	5 cut(s)	57, 66, 117, 554, 787
FauI	CCCGC	1 cut(s)	659
Fnu4HI	GCNGC	2 cut(s)	53, 732
FokI	GGATG	3 cut(s)	338, 364, 509
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	2 cut(s)	53, 732
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 77, 127
GluI	GCNGC	2 cut(s)	53, 732
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	3 cut(s)	6, 78, 128
Hin1II	CATG	5 cut(s)	61, 70, 121, 558, 791
Hin6I	GCGC	3 cut(s)	4, 76, 126
HinP1I	GCGC	3 cut(s)	4, 76, 126
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	208, 404
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	4 cut(s)	149, 269, 531, 709
Hpy8I	GTNNAC	2 cut(s)	208, 404
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	4 cut(s)	430, 468, 706, 731
HpyCH4III	ACNGT	2 cut(s)	115, 576
HpyCH4V	TGCA	6 cut(s)	52, 295, 404, 558, 618, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 134, 410, 677
HpyF3I	CTNAG	6 cut(s)	44, 171, 363, 657, 767, 812
Hsp92II	CATG	5 cut(s)	61, 70, 121, 558, 791
HspAI	GCGC	3 cut(s)	4, 76, 126
KpnI	GGTACC	1 cut(s)	795
Kzo9I	GATC	3 cut(s)	297, 342, 763
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	3 cut(s)	134, 563, 571
Lsp1109I	GCAGC	2 cut(s)	64, 743
LweI	GCATC	2 cut(s)	157, 225
MaeIII	GTNAC	2 cut(s)	104, 805
MalI	GATC	3 cut(s)	299, 344, 765
MboI	GATC	3 cut(s)	297, 342, 763
MboII	GAAGA	4 cut(s)	257, 359, 499, 696
MfeI	CAATTG	2 cut(s)	7, 759
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	4 cut(s)	286, 406, 568, 656
MluCI	AATT	5 cut(s)	7, 534, 540, 745, 759
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	5 cut(s)	156, 186, 324, 477, 651
MseI	TTAA	3 cut(s)	33, 507, 516
MslI	CAYNNNNRTG	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	99, 433
MunI	CAATTG	2 cut(s)	7, 759
MvaI	CCWGG	2 cut(s)	99, 433
MvnI	CGCG	2 cut(s)	78, 666
MwoI	GCNNNNNNNGC	4 cut(s)	12, 134, 410, 677
NdeII	GATC	3 cut(s)	297, 342, 763
NlaIII	CATG	5 cut(s)	61, 70, 121, 558, 791
NlaIV	GGNNCC	4 cut(s)	136, 283, 315, 793
NmuCI	GTSAC	2 cut(s)	104, 805
NsbI	TGCGCA	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	574
PasI	CCCWGGG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	54, 733
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	97, 431
PspGI	CCWGG	2 cut(s)	97, 431
PspN4I	GGNNCC	4 cut(s)	136, 283, 315, 793
PsuI	RGATCY	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	451, 793
RsaNI	GTAC	2 cut(s)	450, 792
RseI	CAYNNNNRTG	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	568
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	33, 507, 516
SatI	GCNGC	2 cut(s)	53, 732
Sau3AI	GATC	3 cut(s)	297, 342, 763
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	99, 433
SduI	GDGCHC	4 cut(s)	286, 406, 568, 656
SfaNI	GCATC	2 cut(s)	157, 225
SfcI	CTRYAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	574
Sse9I	AATT	5 cut(s)	7, 534, 540, 745, 759
SsiI	CCGC	1 cut(s)	666
SstI	GAGCTC	1 cut(s)	568
StyD4I	CCNGG	2 cut(s)	97, 431
TaaI	ACNGT	2 cut(s)	115, 576
TaqI	TCGA	1 cut(s)	345
TasI	AATT	5 cut(s)	7, 534, 540, 745, 759
Tru1I	TTAA	3 cut(s)	33, 507, 516
Tru9I	TTAA	3 cut(s)	33, 507, 516
TscAI	CASTG	2 cut(s)	565, 581
TseFI	GTSAC	2 cut(s)	104, 805
TseI	GCWGC	2 cut(s)	52, 731
Tsp45I	GTSAC	2 cut(s)	104, 805
TspDTI	ATGAA	2 cut(s)	197, 764
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	565, 581
VneI	GTGCAC	1 cut(s)	402
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.