Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Reverse (-)

65815425 .. 65817432

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATGATGATTCATTGAACATGCCCAATTGGGGATACTATGAGGCCTCTTTTAAAGGCCATCTTGGCCTGCAGCTTATGACAAGCATGGGTGAGCGTGACACGAAACCTTTTATACCTGGGCGTGATCCTCCGGTCATGGTTAGCGCCGATGGATATCATCCTCGGGATTGTGTTGTACAGGATGCTCCCGTTCCAATGAGCAACTATATGAGGGAGAGTTGGATTAACCAGAGGGATAAGTTTCTCACTATGATGCCGGCCAATCCTAATTATGGTGTTCTTCCGGAAACTTCAGTCGCTCAGCACTCCATGCAGATCTTACAGCCACCTCCTGATGCATCAAGGGATGAGAGGGTGAATAGAATGGAAGAGCCAGTTGTCCAGAAGGAAGGTGGCCCTTCAAAGAAAAGGCAGAATGGTGGTGCCCCGAAAGCCCCAAAGGTGAAGAAGCCGAGGAAGCCAAAGGACAATAGCAACCCTGCGGTTCCACGTGTGAAGCCCGCAAAAAAGAGTTTGGATGTTGTCATAAACGGGATTACCATGGACATTTCAGGCATTCCAATTCCAGTTTGCTCATGTACTGGAGCTCCCCAACAGTGTTATCGGTGGGGGTGTGGTGGTTGGCAATCCGCTTGTTGCACTACAAATGTGTCTATGTATCCTTTGCCAATGAGCACTAAACGGCGGGGTGCTAGGATAGCTGGAAGAAAAATGAGTCAGGGGGCTTTTAAAAAGGTATTGGAGAAGCTTGCAGCTGAAGGTTATAACTTTGCTAATCCAATTGATTTGAGGACTCACTGGGCAAGACATGGTACAAATAAGTTCGTCACAATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

280

Amino Acids

31.13

Weight (kDa)

9.6

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	2 - 280	1.3e-97	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	4 cut(s)	485, 504, 633, 688
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	279, 780
AcvI	CACGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	180, 583, 817
AfiI	CCNNNNNNNGG	2 cut(s)	32, 275
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	19, 405
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	5 cut(s)	76, 590, 704, 751, 758
AluI	AGCT	5 cut(s)	76, 590, 704, 751, 758
Alw21I	GWGCWC	2 cut(s)	592, 680
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	5 cut(s)	45, 58, 67, 261, 397
ApeKI	GCWGC	2 cut(s)	73, 755
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	104, 370, 457
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	592
BbrPI	CACGTG	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	592, 680
BbvI	GCAGC	2 cut(s)	85, 767
BccI	CCATC	2 cut(s)	69, 146
BceAI	ACGGC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	2 cut(s)	29, 672
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	29, 672
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	2 cut(s)	74, 756
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	75, 757
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	427, 489
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	4 cut(s)	175, 246, 328, 350
BmuI	ACTGGG	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	119, 164, 455, 543
BsaWI	WCCGGW	2 cut(s)	133, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 275
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	4 cut(s)	377, 569, 589, 806
Bse8I	GATNNNNATC	1 cut(s)	156
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	119, 164, 455, 543
BseGI	GGATG	5 cut(s)	10, 160, 190, 355, 526
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	32, 275
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	4 cut(s)	377, 569, 589, 806
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	85, 767
BshFI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	592, 680
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	134, 260, 287
BslI	CCNNNNNNNGG	2 cut(s)	32, 275
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	430, 592, 680
Bsp13I	TCCGGA	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	127, 318
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	4 cut(s)	485, 504, 633, 688
BspANI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	427, 489
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	377, 569, 589, 806
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	119, 164, 455, 543
BssMI	GATC	2 cut(s)	127, 318
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	71, 261, 504, 753
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	5 cut(s)	10, 160, 190, 355, 526
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	130, 321
BstMBI	GATC	2 cut(s)	127, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	85, 767
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	29, 672
BsuRI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	5 cut(s)	10, 160, 190, 355, 526
BtsIMutI	CAGTG	2 cut(s)	605, 799
Cac8I	GCNNGC	4 cut(s)	71, 261, 504, 753
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	179, 582, 816
CviAII	CATG	7 cut(s)	22, 88, 139, 313, 544, 579, 812
CviQI	GTAC	3 cut(s)	179, 582, 816
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	129, 320
DpnII	GATC	2 cut(s)	127, 318
DraI	TTTAAA	2 cut(s)	55, 733
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	592
Eco32I	GATATC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	279, 780
Eco72I	CACGTG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	7 cut(s)	21, 87, 138, 312, 543, 578, 811
FauI	CCCGC	2 cut(s)	511, 681
Fnu4HI	GCNGC	2 cut(s)	74, 756
FokI	GGATG	5 cut(s)	17, 147, 197, 362, 533
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	74, 756
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	74, 756
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	47, 60, 69, 263, 399
HapII	CCGG	3 cut(s)	134, 260, 287
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	3 cut(s)	11, 718, 796
HpaII	CCGG	3 cut(s)	134, 260, 287
HphI	GGTGA	3 cut(s)	104, 370, 457
Hpy188III	TCNNGA	4 cut(s)	167, 287, 335, 385
HpyAV	CCTTC	4 cut(s)	382, 386, 411, 755
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	73, 316, 341, 642, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	127, 318
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	3 cut(s)	193, 587, 595
Lsp1109I	GCAGC	2 cut(s)	85, 767
LweI	GCATC	4 cut(s)	175, 246, 328, 350
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	98, 829
MalI	GATC	2 cut(s)	129, 320
MboI	GATC	2 cut(s)	127, 318
MboII	GAAGA	4 cut(s)	275, 383, 460, 720
MfeI	CAATTG	2 cut(s)	28, 783
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	3 cut(s)	430, 592, 680
MluCI	AATT	4 cut(s)	28, 271, 564, 783
MlyI	GAGTC	2 cut(s)	727, 790
MmeI	TCCRAC	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	3 cut(s)	54, 228, 732
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	3 cut(s)	134, 260, 287
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	2 cut(s)	28, 783
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	66, 313, 434, 460, 701
NaeI	GCCGGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	127, 318
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	7 cut(s)	25, 91, 142, 316, 547, 582, 815
NlaIV	GGNNCC	2 cut(s)	427, 489
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	98, 829
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	75, 757
PleI	GAGTC	2 cut(s)	726, 790
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	2 cut(s)	726, 790
Ppu21I	YACGTR	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	427, 489
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	180, 583, 817
RsaNI	GTAC	3 cut(s)	179, 582, 816
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	54, 228, 732
SatI	GCNGC	2 cut(s)	74, 756
Sau3AI	GATC	2 cut(s)	127, 318
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	727, 790
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	3 cut(s)	430, 592, 680
SfaNI	GCATC	4 cut(s)	175, 246, 328, 350
SfcI	CTRYAG	1 cut(s)	71
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	28, 271, 564, 783
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	485, 504, 633, 688
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	592
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	1 cut(s)	496
TasI	AATT	4 cut(s)	28, 271, 564, 783
TatI	WGTACW	2 cut(s)	178, 581
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	54, 228, 732
Tru9I	TTAA	3 cut(s)	54, 228, 732
TscAI	CASTG	2 cut(s)	605, 806
TseFI	GTSAC	2 cut(s)	98, 829
TseI	GCWGC	2 cut(s)	73, 755
Tsp45I	GTSAC	2 cut(s)	98, 829
TspRI	CASTG	2 cut(s)	605, 806
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.