Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Reverse (-)

64857083 .. 64861740

Gene Structure 4658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGAGAAAGGAAGGTAGTTTGGGCTGTTATATATACAAGAAGAAGAAGCTAGAAGATCAGCATCTCCCCATGGATGATGATTCATTGAACATGCCCAATTGGGGATACTATGAGGCCTCTTTTAAAGGCCATCTTGGCCTGCAGCTTATGACAAGCATGGGTGAGCGTGACACGAAACCTTTTATACCTGGGCGTGATCCTCCGGTCATGGTTAGCGCCAATGGATATCATCCTCGGGATTGTGTTGTACAGGATGCTCCTGTTCCAATGAGCAACTATATGAGGGAGAGTTGGATTAACCAGAGGGATAAGTTTCTCACTATGATGCCGGCCAATCCTAATTATGGTGTTCTTCCGGAAACTTCAGTCGCTCAGCACTCCATGCAGATCTTACAGCCACCTCCTGATGCATCAAGGGATGAGAGGGTGAATAGAATGGAAGAGCCAGTTGTCCATAAGGAAGGTGGCCCTTCAAAGAAAAGGCAGAATGGTGGTGCCCCGAAAGCCCCAAAGGTGAAGAAGCCGAGGAAGCCAAAGGACAATAGCAACCCTGCAGTTCCACGTGTGAAGCCCGCAAAAAAGAGTTTGGATGTTGTCATAAATGGGATTACCATGGACATTTCAGGCATTCCAATTCCAGTTTGCTCATGTACTGGAGCTCCCCAACAGTGTTATCGGTGGGGGTGTGGTGGTTGGCAATCCGCTTGTTGCACTACAAATGTGTCTATGTATCCTTTGCCAATGAGCACTAAACGGCGGGGTGCTAGGATAGCTGGAAGAAAAATGAGTCAGGGGGCTTTTAAAAAGGTATTGGAGAAGCTTGCAGCTGAAGGTTATAACTTTGCTAATCCAATTGATTTGAGGACTCACTGGGCAAGACATGGTACAAATAAGTTCGTCACAATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

304

Amino Acids

34.01

Weight (kDa)

9.61

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	26 - 304	1.8e-97	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	3 cut(s)	576, 705, 760
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	2 cut(s)	351, 852
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	252, 655, 889
AfiI	CCNNNNNNNGG	2 cut(s)	104, 347
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	2 cut(s)	91, 477
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	6 cut(s)	52, 148, 662, 776, 823, 830
AluI	AGCT	6 cut(s)	52, 148, 662, 776, 823, 830
Alw21I	GWGCWC	2 cut(s)	664, 752
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	5 cut(s)	117, 130, 139, 333, 469
ApeKI	GCWGC	2 cut(s)	145, 827
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	176, 442, 529
AvaI	CYCGRG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	664
BbrPI	CACGTG	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	664, 752
BbvI	GCAGC	2 cut(s)	157, 839
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	773
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	2 cut(s)	101, 744
BfaI	CTAG	2 cut(s)	53, 768
BfmI	CTRYAG	2 cut(s)	143, 555
BfoI	RGCGCY	1 cut(s)	222
BfuI	GTATCC	2 cut(s)	101, 744
BglI	GCCNNNNNGGC	1 cut(s)	138
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	2 cut(s)	146, 828
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	2 cut(s)	147, 829
Bme1390I	CCNGG	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	5 cut(s)	73, 247, 318, 400, 422
BmuI	ACTGGG	1 cut(s)	883
BpmI	CTGGAG	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	5 cut(s)	72, 191, 236, 527, 615
BsaWI	WCCGGW	2 cut(s)	205, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 347
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	4 cut(s)	449, 641, 661, 878
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	5 cut(s)	72, 191, 236, 527, 615
BseGI	GGATG	5 cut(s)	82, 232, 262, 427, 598
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	104, 347
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	4 cut(s)	449, 641, 661, 878
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	157, 839
BshFI	GGCC	5 cut(s)	119, 132, 141, 335, 471
BshNI	GGYRCC	1 cut(s)	497
BsiHKAI	GWGCWC	2 cut(s)	664, 752
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	206, 332, 359
BslI	CCNNNNNNNGG	2 cut(s)	104, 347
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	5 cut(s)	119, 132, 141, 335, 471
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	502, 664, 752
Bsp13I	TCCGGA	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	58, 199, 390
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp19I	CCATGG	2 cut(s)	72, 615
BspACI	CCGC	3 cut(s)	576, 705, 760
BspANI	GGCC	5 cut(s)	119, 132, 141, 335, 471
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	2 cut(s)	147, 559
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	449, 641, 661, 878
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	5 cut(s)	72, 191, 236, 527, 615
BssMI	GATC	3 cut(s)	58, 199, 390
BssT1I	CCWWGG	2 cut(s)	72, 615
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstAUI	TGTACA	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	143, 333, 576, 825
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	2 cut(s)	72, 615
BstF5I	GGATG	5 cut(s)	82, 232, 262, 427, 598
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	61, 202, 393
BstMBI	GATC	3 cut(s)	58, 199, 390
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 385, 506, 532, 773
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	143, 555
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	157, 839
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuI	GTATCC	2 cut(s)	101, 744
BsuRI	GGCC	5 cut(s)	119, 132, 141, 335, 471
BtgI	CCRYGG	2 cut(s)	72, 615
BtsCI	GGATG	5 cut(s)	82, 232, 262, 427, 598
BtsIMutI	CAGTG	2 cut(s)	677, 871
Cac8I	GCNNGC	4 cut(s)	143, 333, 576, 825
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	251, 654, 888
CviAII	CATG	8 cut(s)	73, 94, 160, 211, 385, 616, 651, 884
CviQI	GTAC	3 cut(s)	251, 654, 888
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	60, 201, 392
DpnII	GATC	3 cut(s)	58, 199, 390
DraI	TTTAAA	2 cut(s)	127, 805
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	662
Eco130I	CCWWGG	2 cut(s)	72, 615
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	351, 852
Eco72I	CACGTG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	72, 615
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	2 cut(s)	72, 615
FaeI	CATG	8 cut(s)	76, 97, 163, 214, 388, 619, 654, 887
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	8 cut(s)	72, 93, 159, 210, 384, 615, 650, 883
FauI	CCCGC	2 cut(s)	583, 753
Fnu4HI	GCNGC	2 cut(s)	146, 828
FokI	GGATG	5 cut(s)	89, 219, 269, 434, 605
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	2 cut(s)	146, 828
FspBI	CTAG	2 cut(s)	53, 768
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	146, 828
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	5 cut(s)	119, 132, 141, 335, 471
HapII	CCGG	3 cut(s)	206, 332, 359
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	8 cut(s)	76, 97, 163, 214, 388, 619, 654, 887
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	83, 790, 868
HpaII	CCGG	3 cut(s)	206, 332, 359
HphI	GGTGA	3 cut(s)	176, 442, 529
Hpy188III	TCNNGA	3 cut(s)	239, 359, 407
HpyAV	CCTTC	4 cut(s)	8, 458, 483, 827
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	6 cut(s)	145, 388, 413, 557, 714, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 385, 506, 532, 773
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	8 cut(s)	76, 97, 163, 214, 388, 619, 654, 887
HspAI	GCGC	1 cut(s)	219
Kpn2I	TCCGGA	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	58, 199, 390
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	3 cut(s)	265, 659, 667
Lsp1109I	GCAGC	2 cut(s)	157, 839
LweI	GCATC	5 cut(s)	73, 247, 318, 400, 422
MaeI	CTAG	2 cut(s)	53, 768
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	170, 901
MalI	GATC	3 cut(s)	60, 201, 392
MboI	GATC	3 cut(s)	58, 199, 390
MboII	GAAGA	7 cut(s)	55, 58, 68, 347, 455, 532, 792
MfeI	CAATTG	2 cut(s)	100, 855
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	3 cut(s)	502, 664, 752
MluCI	AATT	4 cut(s)	100, 343, 636, 855
MlyI	GAGTC	2 cut(s)	799, 862
MmeI	TCCRAC	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	415
MroI	TCCGGA	1 cut(s)	358
MroNI	GCCGGC	1 cut(s)	331
MseI	TTAA	3 cut(s)	126, 300, 804
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	3 cut(s)	206, 332, 359
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	2 cut(s)	100, 855
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	138, 385, 506, 532, 773
NaeI	GCCGGC	1 cut(s)	333
NcoI	CCATGG	2 cut(s)	72, 615
NdeII	GATC	3 cut(s)	58, 199, 390
NgoMIV	GCCGGC	1 cut(s)	331
NlaIII	CATG	8 cut(s)	76, 97, 163, 214, 388, 619, 654, 887
NlaIV	GGNNCC	1 cut(s)	499
NmeAIII	GCCGAG	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	170, 901
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	147, 829
PleI	GAGTC	2 cut(s)	798, 862
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	2 cut(s)	798, 862
Ppu21I	YACGTR	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	2 cut(s)	147, 559
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	3 cut(s)	252, 655, 889
RsaNI	GTAC	3 cut(s)	251, 654, 888
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	664
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	126, 300, 804
SatI	GCNGC	2 cut(s)	146, 828
Sau3AI	GATC	3 cut(s)	58, 199, 390
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	799, 862
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	3 cut(s)	502, 664, 752
SfaNI	GCATC	5 cut(s)	73, 247, 318, 400, 422
SfcI	CTRYAG	2 cut(s)	143, 555
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	100, 343, 636, 855
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	576, 705, 760
SspMI	CTAG	2 cut(s)	53, 768
SstI	GAGCTC	1 cut(s)	664
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	72, 615
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	568
TasI	AATT	4 cut(s)	100, 343, 636, 855
TatI	WGTACW	2 cut(s)	250, 653
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	126, 300, 804
Tru9I	TTAA	3 cut(s)	126, 300, 804
TscAI	CASTG	2 cut(s)	677, 878
TseFI	GTSAC	2 cut(s)	170, 901
TseI	GCWGC	2 cut(s)	145, 827
Tsp45I	GTSAC	2 cut(s)	170, 901
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	677, 878
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	2 cut(s)	53, 768
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.