Rorug04G0360900

Protein BASIC PENTACYSTEINE2-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
53362766 .. 53364843
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0360900.1

Sequence Viewer

Length: 1068 bp
ATGACACTTCCCTTCTCAACTCACCAATATTATAATATTACCACATTCAAACATTTCCTCTCCTCGCCGCCGGTCAACAAGCCGCGCTGGGCCCGAATGGACTCCGGCCCAGCATCCAGCCCACAACAACATCACCACAAGCTCCGCAAGGACAAGCTCATCGTCATTATGGGAGCCACCGGCGCCGGCAAGTCCCGTCTCTCCATCGACCTCGCCACTCACTTCCCTTCTTGCTTCGAAATCATCAACTCCGACAAGATGCAAGTCTACAAGGGTCTCGACATCACCACCAACAAGATTCCCGTCCCCGACCGCCTGGGGGTCCCTCACCATCTCCTCGGCGAGTTAGACCCGCTCGACGGCGAGGTCTCCCCCACCGAGTTTCGACACCTCGCAGGTCGAGCCGTTTCCAGCATTACTTGTAGAGGTAAAGTGCCTATGCTCGTGGGTGGGTCCAACTCTCTTATTCACGCGCTCCTCGTAGACCGGTTCGAACCGGGTGTCAATAATGTATTCGAAAACGGCGCCGAGTTAGTGTCATCGGAGCTCAGGTATGATTGCTGCTTTCTCTGGGTTGATGTGTCATTGGTGGTTTTGGCCGACTACTTATCGAAGCGAGTGGACGAAATGCTTGAGTCGGGAATGTTTGAGGAGTTGGCCGAGTTTTGCGAGACGGAGGAGGAGGACGACGCGGCGGTTCGAACCGGGTTGAGAAAGGCTATTGGAGTGCCGGAGTTCAGCCAGTTTTTTAAAAAGTACCCGCCGGGAAGAAGGCAGTGTCGGAGTGCCGGGCCCCATGATCCGCTGAGGAGGGGAGCAGCATACAGCGATGCGGTGAGGGCCATCAAGGAGAACACGTGTCAGTTGGCCAAGAAGCAGATTGGAAAGATTTTACGGCTGAAGGGGGCAGGCTGGTGGGAGCTACGGAGGCTAGACGCGACGGAGGCGTTTAGGGCGGTGGTGACGTCAGATAACGACGATGTCGGAAGGAGGTGGTCGGAGATATGGGAGGAACAGGTGGTGGAACCAAGCGTGAAAATTGTGAAGCGATTCTTGGAGCAGGAGTAG

Protein Analysis

355

Amino Acids

39.98

Weight (kDa)

6.84

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPPT PF01715 88 - 162 1.2e-15 IPP transferase
IPPT PF01715 182 - 294 1.4e-11 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AasI GACNNNNNNGTC 1 cut(s) 365
AatII GACGTC 1 cut(s) 968
Acc36I ACCTGC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 182, 524
AccBSI CCGCTC 1 cut(s) 355
AccI GTMKAC 2 cut(s) 267, 483
AccII CGCG 4 cut(s) 85, 473, 692, 938
AclWI GGATC 1 cut(s) 794
AcoI YGGCCR 3 cut(s) 597, 657, 867
AcuI CTGAAG 1 cut(s) 920
AcvI CACGTG 1 cut(s) 858
AcyI GRCGYC 3 cut(s) 183, 525, 965
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 2 cut(s) 319, 359
AflIII ACRYGT 2 cut(s) 855, 857
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 1 cut(s) 1037
AluBI AGCT 4 cut(s) 142, 157, 547, 922
AluI AGCT 4 cut(s) 142, 157, 547, 922
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 4 cut(s) 203, 281, 373, 665
AlwI GGATC 1 cut(s) 794
AoxI GGCC 7 cut(s) 90, 106, 597, 657, 791, 840, 867
ApaI GGGCCC 2 cut(s) 94, 795
ApeKI GCWGC 2 cut(s) 561, 818
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
AsiGI ACCGGT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 1049
AspLEI GCGC 4 cut(s) 87, 185, 475, 527
AspS9I GGNCC 8 cut(s) 90, 91, 107, 322, 453, 791, 792, 840
AsuC2I CCSGG 4 cut(s) 498, 706, 765, 790
AsuHPI GGTGA 6 cut(s) 14, 125, 277, 320, 847, 973
AsuII TTCGAA 4 cut(s) 237, 492, 516, 700
AvaII GGWCC 2 cut(s) 322, 453
BaeGI GKGCMC 2 cut(s) 94, 795
BalI TGGCCA 1 cut(s) 869
BanI GGYRCC 2 cut(s) 182, 524
BanII GRGCYC 3 cut(s) 94, 549, 795
BauI CACGAG 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 548, 830
BccI CCATC 3 cut(s) 212, 339, 851
BceAI ACGGC 4 cut(s) 376, 389, 538, 911
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 4 cut(s) 498, 706, 765, 790
BcoDI GTCTC 4 cut(s) 203, 281, 373, 665
BfaI CTAG 1 cut(s) 932
BfoI RGCGCY 2 cut(s) 186, 528
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 5 cut(s) 68, 83, 562, 693, 819
BlsI GCNGC 5 cut(s) 69, 84, 563, 694, 820
Bme1390I CCNGG 5 cut(s) 317, 498, 706, 765, 790
Bme18I GGWCC 2 cut(s) 322, 453
BmgT120I GGNCC 8 cut(s) 90, 91, 107, 322, 453, 791, 792, 840
BmrFI CCNGG 5 cut(s) 317, 498, 706, 765, 790
BmsI GCATC 3 cut(s) 122, 249, 820
Bpu10I CCTNAGC 2 cut(s) 548, 806
Bpu14I TTCGAA 4 cut(s) 237, 492, 516, 700
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 4 cut(s) 498, 706, 765, 790
BsaAI YACGTR 1 cut(s) 858
BsaHI GRCGYC 3 cut(s) 183, 525, 965
BsaI GGTCTC 2 cut(s) 281, 373
BsaJI CCNNGG 2 cut(s) 316, 337
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 5 cut(s) 536, 566, 842, 872, 1049
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 359
Bse118I RCCGGY 4 cut(s) 70, 179, 185, 486
Bse1I ACTGG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 316, 337
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 319, 359
BseMII CTCAG 2 cut(s) 562, 797
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 7 cut(s) 52, 326, 467, 665, 692, 695, 823
BseSI GKGCMC 2 cut(s) 94, 795
BseXI GCAGC 2 cut(s) 548, 830
BseYI CCCAGC 2 cut(s) 87, 109
Bsh1236I CGCG 4 cut(s) 85, 473, 692, 938
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 7 cut(s) 92, 108, 599, 659, 793, 842, 869
BshNI GGYRCC 2 cut(s) 182, 524
BshTI ACCGGT 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 549
BslFI GGGAC 3 cut(s) 178, 290, 308
BslI CCNNNNNNNGG 2 cut(s) 319, 359
BsmAI GTCTC 4 cut(s) 203, 281, 373, 665
BsmBI CGTCTC 2 cut(s) 203, 665
BsmFI GGGAC 3 cut(s) 178, 290, 308
BsnI GGCC 7 cut(s) 92, 108, 599, 659, 793, 842, 869
Bso31I GGTCTC 2 cut(s) 281, 373
Bsp119I TTCGAA 4 cut(s) 237, 492, 516, 700
Bsp120I GGGCCC 2 cut(s) 90, 791
Bsp1286I GDGCHC 3 cut(s) 94, 549, 795
Bsp143I GATC 1 cut(s) 799
BspANI GGCC 7 cut(s) 92, 108, 599, 659, 793, 842, 869
BspCNI CTCAG 2 cut(s) 561, 798
BspFNI CGCG 4 cut(s) 85, 473, 692, 938
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 4 cut(s) 237, 492, 516, 700
BspT107I GGYRCC 2 cut(s) 182, 524
BspTNI GGTCTC 2 cut(s) 281, 373
BsrBI CCGCTC 1 cut(s) 355
BsrFI RCCGGY 4 cut(s) 70, 179, 185, 486
BsrI ACTGG 1 cut(s) 742
BssAI RCCGGY 4 cut(s) 70, 179, 185, 486
BssECI CCNNGG 2 cut(s) 316, 337
BssMI GATC 1 cut(s) 799
BssNI GRCGYC 3 cut(s) 183, 525, 965
BssSI CACGAG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 317
BstACI GRCGYC 3 cut(s) 183, 525, 965
BstBAI YACGTR 1 cut(s) 858
BstBI TTCGAA 4 cut(s) 237, 492, 516, 700
BstC8I GCNNGC 2 cut(s) 187, 910
BstDEI CTNAG 2 cut(s) 548, 806
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 4 cut(s) 85, 473, 692, 938
BstH2I RGCGCY 2 cut(s) 186, 528
BstHHI GCGC 4 cut(s) 87, 185, 475, 527
BstKTI GATC 1 cut(s) 802
BstMAI GTCTC 4 cut(s) 203, 281, 373, 665
BstMBI GATC 1 cut(s) 799
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 6 cut(s) 182, 401, 839, 928, 944, 953
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 5 cut(s) 315, 496, 704, 763, 788
BstSLI GKGCMC 2 cut(s) 94, 795
BstUI CGCG 4 cut(s) 85, 473, 692, 938
BstV1I GCAGC 2 cut(s) 548, 830
BsuRI GGCC 7 cut(s) 92, 108, 599, 659, 793, 842, 869
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 1 cut(s) 782
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 187, 910
CfoI GCGC 4 cut(s) 87, 185, 475, 527
Cfr10I RCCGGY 4 cut(s) 70, 179, 185, 486
Cfr13I GGNCC 8 cut(s) 90, 91, 107, 322, 453, 791, 792, 840
CseI GACGC 2 cut(s) 698, 944
Csp6I GTAC 1 cut(s) 757
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 1 cut(s) 797
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 2 cut(s) 548, 806
DinI GGCGCC 2 cut(s) 184, 526
DpnI GATC 1 cut(s) 801
DpnII GATC 1 cut(s) 799
DraI TTTAAA 1 cut(s) 751
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 3 cut(s) 597, 657, 867
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 3 cut(s) 94, 549, 795
Eco31I GGTCTC 2 cut(s) 281, 373
Eco47I GGWCC 2 cut(s) 322, 453
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 920
Eco72I CACGTG 1 cut(s) 858
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 322, 792
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 3 cut(s) 94, 549, 795
EgeI GGCGCC 2 cut(s) 184, 526
EheI GGCGCC 2 cut(s) 184, 526
Esp3I CGTCTC 2 cut(s) 203, 665
FaeI CATG 1 cut(s) 800
FaiI YATR 7 cut(s) 33, 170, 440, 555, 798, 823, 1006
FalI AAGNNNNNCTT 1 cut(s) 1037
FaqI GGGAC 3 cut(s) 178, 290, 308
FatI CATG 1 cut(s) 796
FauI CCCGC 2 cut(s) 360, 768
FblI GTMKAC 2 cut(s) 267, 483
Fnu4HI GCNGC 5 cut(s) 68, 83, 562, 693, 819
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 3 cut(s) 94, 549, 795
Fsp4HI GCNGC 5 cut(s) 68, 83, 562, 693, 819
FspBI CTAG 1 cut(s) 932
GlaI GCGC 4 cut(s) 86, 184, 474, 526
GluI GCNGC 5 cut(s) 68, 83, 562, 693, 819
GsaI CCCAGC 2 cut(s) 91, 113
HaeII RGCGCY 2 cut(s) 186, 528
HaeIII GGCC 7 cut(s) 92, 108, 599, 659, 793, 842, 869
HgaI GACGC 2 cut(s) 698, 944
HhaI GCGC 4 cut(s) 87, 185, 475, 527
Hin1I GRCGYC 3 cut(s) 183, 525, 965
Hin1II CATG 1 cut(s) 800
Hin6I GCGC 4 cut(s) 85, 183, 473, 525
HinP1I GCGC 4 cut(s) 85, 183, 473, 525
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 101, 298, 635, 1050
HphI GGTGA 6 cut(s) 14, 125, 277, 320, 847, 973
Hpy166II GTNNAC 4 cut(s) 76, 268, 484, 622
Hpy188I TCNGA 6 cut(s) 253, 544, 783, 970, 986, 1000
Hpy188III TCNNGA 2 cut(s) 278, 639
Hpy8I GTNNAC 4 cut(s) 76, 268, 484, 622
Hpy99I CGWCG 4 cut(s) 362, 692, 943, 980
HpyAV CCTTC 5 cut(s) 22, 237, 765, 895, 981
HpyCH4IV ACGT 2 cut(s) 857, 965
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 401, 839, 928, 944, 953
HpyF3I CTNAG 2 cut(s) 548, 806
HpySE526I ACGT 2 cut(s) 857, 965
Hsp92I GRCGYC 3 cut(s) 183, 525, 965
Hsp92II CATG 1 cut(s) 800
HspAI GCGC 4 cut(s) 85, 183, 473, 525
KasI GGCGCC 2 cut(s) 182, 524
KflI GGGWCCC 1 cut(s) 322
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 799
LmnI GCTCC 7 cut(s) 147, 173, 480, 544, 815, 919, 1057
Lsp1109I GCAGC 2 cut(s) 548, 830
LweI GCATC 3 cut(s) 122, 249, 820
MaeI CTAG 1 cut(s) 932
MaeII ACGT 2 cut(s) 857, 965
MaeIII GTNAC 1 cut(s) 961
MalI GATC 1 cut(s) 801
MbiI CCGCTC 1 cut(s) 355
MboI GATC 1 cut(s) 799
MboII GAAGA 1 cut(s) 780
MhlI GDGCHC 3 cut(s) 94, 549, 795
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 1 cut(s) 1038
MluNI TGGCCA 1 cut(s) 869
Mly113I GGCGCC 2 cut(s) 183, 525
MlyI GAGTC 2 cut(s) 95, 644
MmeI TCCRAC 5 cut(s) 276, 480, 761, 964, 978
Mox20I TGGCCA 1 cut(s) 869
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 1049
MscI TGGCCA 1 cut(s) 869
MseI TTAA 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 869
MspA1I CMGCKG 1 cut(s) 805
MspR9I CCNGG 5 cut(s) 317, 498, 706, 765, 790
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 4 cut(s) 85, 473, 692, 938
MwoI GCNNNNNNNGC 6 cut(s) 182, 401, 839, 928, 944, 953
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 2 cut(s) 183, 525
NciI CCSGG 4 cut(s) 498, 706, 765, 790
NdeII GATC 1 cut(s) 799
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 800
NmeAIII GCCGAG 3 cut(s) 318, 553, 685
NmuCI GTSAC 1 cut(s) 961
NspV TTCGAA 4 cut(s) 237, 492, 516, 700
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 298, 1050
PflFI GACNNNGTC 1 cut(s) 980
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 5 cut(s) 69, 84, 563, 694, 820
PleI GAGTC 2 cut(s) 95, 643
PluTI GGCGCC 2 cut(s) 186, 528
PmaCI CACGTG 1 cut(s) 858
PmlI CACGTG 1 cut(s) 858
PpsI GAGTC 2 cut(s) 95, 643
Ppu21I YACGTR 1 cut(s) 858
PpuMI RGGWCCY 1 cut(s) 322
PsiI TTATAA 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 315
PspCI CACGTG 1 cut(s) 858
PspFI CCCAGC 2 cut(s) 87, 109
PspGI CCWGG 1 cut(s) 315
PspOMI GGGCCC 2 cut(s) 90, 791
PspPI GGNCC 8 cut(s) 90, 91, 107, 322, 453, 791, 792, 840
PspPPI RGGWCCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 980
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 5 cut(s) 68, 83, 562, 693, 819
Sau3AI GATC 1 cut(s) 799
Sau96I GGNCC 8 cut(s) 90, 91, 107, 322, 453, 791, 792, 840
SchI GAGTC 2 cut(s) 95, 644
ScrFI CCNGG 5 cut(s) 317, 498, 706, 765, 790
SduI GDGCHC 3 cut(s) 94, 549, 795
SfaNI GCATC 3 cut(s) 122, 249, 820
SfoI GGCGCC 2 cut(s) 184, 526
SfuI TTCGAA 4 cut(s) 237, 492, 516, 700
SgrAI CRCCGGYG 1 cut(s) 179
SinI GGWCC 2 cut(s) 322, 453
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 1 cut(s) 1038
SspDI GGCGCC 2 cut(s) 182, 524
SspI AATATT 2 cut(s) 29, 37
SspMI CTAG 1 cut(s) 932
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 5 cut(s) 315, 496, 704, 763, 788
TaiI ACGT 2 cut(s) 860, 968
TasI AATT 1 cut(s) 1038
TauI GCSGC 3 cut(s) 70, 85, 695
TfiI GAWTC 2 cut(s) 298, 1050
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 2 cut(s) 561, 818
Tsp45I GTSAC 1 cut(s) 961
TspGWI ACGGA 3 cut(s) 689, 940, 956
TspRI CASTG 1 cut(s) 782
Tth111I GACNNNGTC 1 cut(s) 980
VpaK11BI GGWCC 2 cut(s) 322, 453
XmiI GTMKAC 2 cut(s) 267, 483
XmnI GAANNNNTTC 1 cut(s) 1049
XspI CTAG 1 cut(s) 932
ZraI GACGTC 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.