Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Reverse (-)

32987696 .. 32989701

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATGATGATTCATTGAACATGCCCAATTGGGGATACTATGAGGCCTCGTTTAAAGGCCATCTTGGCCTGCAGCTCATGACAAGCATGGGTGAGCGTGACACGAAACCTTTTATACCCGGGCGTGATCCTCCAGTCATGGTTAGCGCCAATGGATATCATCCACGGGATTGTGTTGTACAGGATGCTCCTGTTCCGATGAGCAACTATATGAGGGAGAGTTGGATTAGCCAGAGGGATAAGTTTCTCACTATGATGCCGGCCAATCCTAATTATGGTGTTATCCCGGAAACTTCAGCCGCACAGCACGCCATGCAGATCTTACAACCACCACCTGATATATCAAGGGATGAGAGGGTGAACAGAATGGAAGAGCCAGTTGTCCACAAGGAAGGTGGCCCTTCAAAGAAAAGGCAGAATGGTGGTGCCCCGAAAGCCCCAAAGGTGAAGAAGCCAAGGAAGCCAAAGGATAATAGCAACCCTGCGGTTCCACGTGTGAAGCCCGCAAAAAAGAGTTTCGAAGTTGTCATAAACGGAATTCCTTTGGACATTTCTGGCATTTCAATTCCAGTTTGCTCTTGTACGGGAACTCCCCAACAGTGTTATCGGTGGGGCTGTGGTGGTTGGCAATCCGCCTGTTGCACTACAAATGTGTCTATGTATCCTTTGCCAATGAGCACTAAACGGCGAGGTGCTAGGATAGCTGGAAGAAAAATGAGTCAAGGTGCTTTTAAAAAGGTATTGGAGAAGCTTGCAAGTGAAGGTTATAACTTTGCTAATCCAATTGATTTGAGGACTCACTGGGCAAGACATGGTACGAACAAGTTTGTCACAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

9.66

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	2 - 280	4.3e-95	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	4 cut(s)	300, 485, 504, 633
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	180, 583, 817
AfiI	CCNNNNNNNGG	2 cut(s)	32, 275
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	19, 405, 564
AluBI	AGCT	3 cut(s)	76, 704, 751
AluI	AGCT	3 cut(s)	76, 704, 751
Alw21I	GWGCWC	1 cut(s)	680
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	45, 58, 67, 261, 397
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	3 cut(s)	120, 121, 287
AsuHPI	GGTGA	3 cut(s)	104, 370, 457
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	425
BbrPI	CACGTG	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	701
BciVI	GTATCC	2 cut(s)	29, 672
BcnI	CCSGG	3 cut(s)	120, 121, 287
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	29, 672
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	2 cut(s)	74, 300
BlsI	GCNGC	2 cut(s)	75, 301
Bme1390I	CCNGG	3 cut(s)	120, 121, 287
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	427, 489
BmrFI	CCNGG	3 cut(s)	120, 121, 287
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	2 cut(s)	175, 246
BmuI	ACTGGG	1 cut(s)	811
BpmI	CTGGAG	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	519
BpuMI	CCSGG	3 cut(s)	120, 121, 287
BsaAI	YACGTR	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	119, 164, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 275
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	4 cut(s)	134, 377, 569, 806
BseDI	CCNNGG	3 cut(s)	119, 164, 455
BseGI	GGATG	4 cut(s)	10, 160, 190, 355
BseLI	CCNNNNNNNGG	2 cut(s)	32, 275
BseNI	ACTGG	4 cut(s)	134, 377, 569, 806
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	680
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	120, 260, 287
BslI	CCNNNNNNNGG	2 cut(s)	32, 275
BsnI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	430, 680
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	127, 318
BspACI	CCGC	4 cut(s)	300, 485, 504, 633
BspANI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	427, 489
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	366
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	134, 377, 569, 806
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	119, 164, 455
BssMI	GATC	2 cut(s)	127, 318
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	5 cut(s)	71, 261, 309, 504, 753
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	4 cut(s)	10, 160, 190, 355
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	130, 321
BstMBI	GATC	2 cut(s)	127, 318
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 308, 313, 434, 460, 701
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	118, 119, 285
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	29, 672
BsuRI	GGCC	5 cut(s)	47, 60, 69, 263, 399
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	4 cut(s)	10, 160, 190, 355
BtsIMutI	CAGTG	2 cut(s)	605, 799
Cac8I	GCNNGC	5 cut(s)	71, 261, 309, 504, 753
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	398
Cfr9I	CCCGGG	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	179, 582, 816
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	6 cut(s)	22, 79, 88, 139, 313, 812
CviQI	GTAC	3 cut(s)	179, 582, 816
DpnI	GATC	2 cut(s)	129, 320
DpnII	GATC	2 cut(s)	127, 318
DraI	TTTAAA	2 cut(s)	55, 733
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	455
Eco147I	AGGCCT	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	279
Eco72I	CACGTG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	6 cut(s)	25, 82, 91, 142, 316, 815
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	6 cut(s)	21, 78, 87, 138, 312, 811
FauI	CCCGC	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	74, 300
FokI	GGATG	4 cut(s)	17, 147, 197, 362
Fsp4HI	GCNGC	2 cut(s)	74, 300
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	74, 300
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	47, 60, 69, 263, 399
HapII	CCGG	3 cut(s)	120, 260, 287
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	6 cut(s)	25, 82, 91, 142, 316, 815
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	3 cut(s)	11, 718, 796
HpaII	CCGG	3 cut(s)	120, 260, 287
HphI	GGTGA	3 cut(s)	104, 370, 457
Hpy166II	GTNNAC	2 cut(s)	361, 385
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	361, 385
HpyAV	CCTTC	3 cut(s)	386, 411, 755
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	73, 316, 642, 755
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 308, 313, 434, 460, 701
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	6 cut(s)	25, 82, 91, 142, 316, 815
HspAI	GCGC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	127, 318
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	175, 246
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	98, 829
MalI	GATC	2 cut(s)	129, 320
MboI	GATC	2 cut(s)	127, 318
MboII	GAAGA	3 cut(s)	383, 460, 720
MfeI	CAATTG	2 cut(s)	28, 783
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	430, 680
MluCI	AATT	5 cut(s)	28, 271, 537, 564, 783
MlyI	GAGTC	2 cut(s)	727, 790
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	8 cut(s)	37, 58, 141, 207, 228, 348, 683, 786
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	2 cut(s)	54, 732
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	3 cut(s)	120, 260, 287
MspR9I	CCNGG	3 cut(s)	120, 121, 287
MunI	CAATTG	2 cut(s)	28, 783
MwoI	GCNNNNNNNGC	6 cut(s)	66, 308, 313, 434, 460, 701
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	3 cut(s)	120, 121, 287
NdeII	GATC	2 cut(s)	127, 318
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	25, 82, 91, 142, 316, 815
NlaIV	GGNNCC	2 cut(s)	427, 489
NmuCI	GTSAC	2 cut(s)	98, 829
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	519
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	366
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	75, 301
PleI	GAGTC	2 cut(s)	726, 790
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	2 cut(s)	726, 790
Ppu21I	YACGTR	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	768
PspCI	CACGTG	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	427, 489
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	3 cut(s)	180, 583, 817
RsaNI	GTAC	3 cut(s)	179, 582, 816
RseI	CAYNNNNRTG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	54, 732
SatI	GCNGC	2 cut(s)	74, 300
Sau3AI	GATC	2 cut(s)	127, 318
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	727, 790
ScrFI	CCNGG	3 cut(s)	120, 121, 287
SduI	GDGCHC	2 cut(s)	430, 680
SfaNI	GCATC	2 cut(s)	175, 246
SfcI	CTRYAG	1 cut(s)	71
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	519
SmaI	CCCGGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	28, 271, 537, 564, 783
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	300, 485, 504, 633
SspMI	CTAG	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	118, 119, 285
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	519
TasI	AATT	5 cut(s)	28, 271, 537, 564, 783
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	54, 732
Tru9I	TTAA	2 cut(s)	54, 732
TscAI	CASTG	2 cut(s)	605, 806
TseFI	GTSAC	2 cut(s)	98, 829
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	98, 829
TspGWI	ACGGA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	119
TspRI	CASTG	2 cut(s)	605, 806
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.