RLG00000005747

Protein BASIC PENTACYSTEINE2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010032
Physical Location & Seq
Forward (+)
1403949 .. 1405940
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005747

Sequence Viewer

Length: 846 bp
ATGGATGATGATTCATTGAACATGCCCAATTGGGGATACTATGAGGCCTCTTTTAAAGGCCATCTTGGCCTGCAGCTTATGACAAGCATGGGTGAGCGTGACACGAAACCTTTTATACCTGGGCGTGATCCTCCGGTCATGGTTAGTGCCAATGGATATCATCCTCGGGATTGTGTTGTACAGGATGCTCCTGTTCCAATGAGCAACTATATGAGGGAGAGTTGGATTAACCAGAGGGATAAGTTTCTCACTATGATGCCGGCCAATCCTAATTATGGTGTTCTTCCGGAAACTTCAGTCGCTCAGCACTCCATGCAGATCTTACAGCCACCTCCTGATGCATCAAGGGATGAGAGGGTGAATAGAATGGAAGAGCCAGTTGTCCATAAGGAAGGTGGCCCTTCAAAGAAAAGGCATAATGGTGGTGGTGCCCCGAAAGCCCCAAAGGTGAAGAAGCCGAGGAAGCCAAAGGACAATAGCAACCCTGCGGTTCCACGTGTGAAGCCTGCAAAAAAGAGTTTGGATGTTGTCATAAACGGGATTACCATGGACATTTCAGGCATTCCAATTCCAGTTTGCTCATGTACTGGAGCTCCCCAACAGTGTTACCGGTGGGGGTGTGGTGGTTGGCAATCCGCTTGTTGCACTACAAATGTGTCTATGTATCCTTTGCCAATGAGCACTAAACGGCGGGGTGCTAGGATAGCTGGAAGAAAAATGAGTCAGGGGGCTTTTAAAAAGGTATTGGAGAAGCTTGCAGCTGAAGGTTATAACTTTGCTAATCCAATTGATTTGAGGACTCACTGGGCAAGACATGGTACAAATAAGTTCGTCACAATCAGGTAG

Protein Analysis

282

Amino Acids

31.2

Weight (kDa)

9.66

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAGA_bind PF06217 2 - 281 1.9e-96 GAGA binding protein-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca FvH4_4g35810
malus_domestica MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis pycom13g01290 pycom16g01200
rosa_chinensis RchiOBHm_Chr4g0445341
rosa_laevigata RLG00000005747
rosa_multiflora Rmu_sc0000050.1_g000011
rosa_roxburghii Rroxscaffold_5G00385860
rosa_rugosa Rorug04G0360900
rosa_samantha Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana Rw4G036190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 3 cut(s) 488, 636, 691
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 279, 783
AcvI CACGTG 1 cut(s) 497
AfaI GTAC 3 cut(s) 180, 586, 820
AfiI CCNNNNNNNGG 2 cut(s) 32, 275
AflIII ACRYGT 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 609
AgsI TTSAA 2 cut(s) 19, 405
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 5 cut(s) 76, 593, 707, 754, 761
AluI AGCT 5 cut(s) 76, 593, 707, 754, 761
Alw21I GWGCWC 2 cut(s) 595, 683
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 165
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 5 cut(s) 45, 58, 67, 261, 397
ApeKI GCWGC 2 cut(s) 73, 758
AsiGI ACCGGT 1 cut(s) 609
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 104, 370, 460
AvaI CYCGRG 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 497
Bbv12I GWGCWC 2 cut(s) 595, 683
BbvI GCAGC 2 cut(s) 85, 770
BccI CCATC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 704
BciT130I CCWGG 1 cut(s) 120
BciVI GTATCC 2 cut(s) 29, 675
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 71
BfuI GTATCC 2 cut(s) 29, 675
BglI GCCNNNNNGGC 1 cut(s) 66
BglII AGATCT 1 cut(s) 318
BisI GCNGC 2 cut(s) 74, 759
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 2 cut(s) 75, 760
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 430, 492
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 4 cut(s) 175, 246, 328, 350
BmuI ACTGGG 1 cut(s) 814
BpmI CTGGAG 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 4 cut(s) 119, 164, 458, 546
BsaWI WCCGGW 3 cut(s) 133, 286, 609
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 275
Bse118I RCCGGY 2 cut(s) 259, 609
Bse1I ACTGG 4 cut(s) 377, 572, 592, 809
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 119, 164, 458, 546
BseGI GGATG 5 cut(s) 10, 160, 190, 355, 529
BseLI CCNNNNNNNGG 2 cut(s) 32, 275
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 4 cut(s) 377, 572, 592, 809
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 85, 770
BshFI GGCC 5 cut(s) 47, 60, 69, 263, 399
BshNI GGYRCC 1 cut(s) 428
BshTI ACCGGT 1 cut(s) 609
BsiHKAI GWGCWC 2 cut(s) 595, 683
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 4 cut(s) 134, 260, 287, 610
BslI CCNNNNNNNGG 2 cut(s) 32, 275
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 5 cut(s) 47, 60, 69, 263, 399
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 433, 595, 683
Bsp13I TCCGGA 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 2 cut(s) 127, 318
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 3 cut(s) 488, 636, 691
BspANI GGCC 5 cut(s) 47, 60, 69, 263, 399
BspCNI CTCAG 1 cut(s) 316
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 430, 492
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 259, 609
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 4 cut(s) 377, 572, 592, 809
BssAI RCCGGY 2 cut(s) 259, 609
BssECI CCNNGG 4 cut(s) 119, 164, 458, 546
BssMI GATC 2 cut(s) 127, 318
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 4 cut(s) 71, 261, 507, 756
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 5 cut(s) 10, 160, 190, 355, 529
BstKTI GATC 2 cut(s) 130, 321
BstMBI GATC 2 cut(s) 127, 318
BstMWI GCNNNNNNNGC 5 cut(s) 66, 313, 437, 463, 704
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 85, 770
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuI GTATCC 2 cut(s) 29, 675
BsuRI GGCC 5 cut(s) 47, 60, 69, 263, 399
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 5 cut(s) 10, 160, 190, 355, 529
BtsIMutI CAGTG 2 cut(s) 608, 802
Cac8I GCNNGC 4 cut(s) 71, 261, 507, 756
Cfr10I RCCGGY 2 cut(s) 259, 609
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 3 cut(s) 179, 585, 819
CspAI ACCGGT 1 cut(s) 609
CviAII CATG 7 cut(s) 22, 88, 139, 313, 547, 582, 815
CviQI GTAC 3 cut(s) 179, 585, 819
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 129, 320
DpnII GATC 2 cut(s) 127, 318
DraI TTTAAA 2 cut(s) 55, 736
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 595
Eco32I GATATC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 593
Eco57I CTGAAG 2 cut(s) 279, 783
Eco72I CACGTG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 7 cut(s) 25, 91, 142, 316, 550, 585, 818
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 7 cut(s) 21, 87, 138, 312, 546, 581, 814
FauI CCCGC 1 cut(s) 684
Fnu4HI GCNGC 2 cut(s) 74, 759
FokI GGATG 5 cut(s) 17, 147, 197, 362, 536
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 2 cut(s) 74, 759
FspBI CTAG 1 cut(s) 699
GluI GCNGC 2 cut(s) 74, 759
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 5 cut(s) 47, 60, 69, 263, 399
HapII CCGG 4 cut(s) 134, 260, 287, 610
Hin1II CATG 7 cut(s) 25, 91, 142, 316, 550, 585, 818
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 3 cut(s) 11, 721, 799
HpaII CCGG 4 cut(s) 134, 260, 287, 610
HphI GGTGA 3 cut(s) 104, 370, 460
Hpy188III TCNNGA 3 cut(s) 167, 287, 335
HpyAV CCTTC 3 cut(s) 386, 411, 758
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 6 cut(s) 73, 316, 341, 509, 645, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 313, 437, 463, 704
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 7 cut(s) 25, 91, 142, 316, 550, 585, 818
Kpn2I TCCGGA 1 cut(s) 286
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 127, 318
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 3 cut(s) 193, 590, 598
Lsp1109I GCAGC 2 cut(s) 85, 770
LweI GCATC 4 cut(s) 175, 246, 328, 350
MaeI CTAG 1 cut(s) 699
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 3 cut(s) 98, 605, 832
MalI GATC 2 cut(s) 129, 320
MboI GATC 2 cut(s) 127, 318
MboII GAAGA 4 cut(s) 275, 383, 463, 723
MfeI CAATTG 2 cut(s) 28, 786
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 3 cut(s) 433, 595, 683
MluCI AATT 4 cut(s) 28, 271, 567, 786
MlyI GAGTC 2 cut(s) 730, 793
MmeI TCCRAC 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 343
MroI TCCGGA 1 cut(s) 286
MroNI GCCGGC 1 cut(s) 259
MseI TTAA 3 cut(s) 54, 228, 735
MslI CAYNNNNRTG 2 cut(s) 254, 420
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 4 cut(s) 134, 260, 287, 610
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 2 cut(s) 28, 786
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 66, 313, 437, 463, 704
NaeI GCCGGC 1 cut(s) 261
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 127, 318
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 7 cut(s) 25, 91, 142, 316, 550, 585, 818
NlaIV GGNNCC 2 cut(s) 430, 492
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 98, 832
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 25
PceI AGGCCT 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 366
PctI GAATGC 1 cut(s) 561
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 609
PkrI GCNGC 2 cut(s) 75, 760
PleI GAGTC 2 cut(s) 729, 793
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 2 cut(s) 729, 793
Ppu21I YACGTR 1 cut(s) 497
PsiI TTATAA 1 cut(s) 771
Psp124BI GAGCTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 118
PspCI CACGTG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 430, 492
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 3 cut(s) 180, 586, 820
RsaNI GTAC 3 cut(s) 179, 585, 819
RseI CAYNNNNRTG 2 cut(s) 254, 420
SacI GAGCTC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 54, 228, 735
SatI GCNGC 2 cut(s) 74, 759
Sau3AI GATC 2 cut(s) 127, 318
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 730, 793
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 3 cut(s) 433, 595, 683
SfaNI GCATC 4 cut(s) 175, 246, 328, 350
SfcI CTRYAG 1 cut(s) 71
SfiI GGCCNNNNNGGCC 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 254, 420
Sse9I AATT 4 cut(s) 28, 271, 567, 786
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 3 cut(s) 488, 636, 691
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 1 cut(s) 595
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 603
TaiI ACGT 1 cut(s) 499
TasI AATT 4 cut(s) 28, 271, 567, 786
TatI WGTACW 2 cut(s) 178, 584
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 54, 228, 735
Tru9I TTAA 3 cut(s) 54, 228, 735
TscAI CASTG 2 cut(s) 608, 809
TseFI GTSAC 2 cut(s) 98, 832
TseI GCWGC 2 cut(s) 73, 758
Tsp45I GTSAC 2 cut(s) 98, 832
TspRI CASTG 2 cut(s) 608, 809
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XspI CTAG 1 cut(s) 699
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.