Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010032

Physical Location & Seq

Genomic Coordinates Forward (+)

984713 .. 986844

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1012800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCGCAATTGGGGTTACTATGAGCCATCTTTTAAAGGTCATCTTAGCCTGCAGCTCATGTCAAGCATGGCAGAGCGCGACATTAAACCTTTTGCCCCTGGGCGCGATCCTGCAGTCATGGTTAGCGCCAACGGAGCTTATCACCCTCGGGATTGTGTTGTATCAGACGCTCAGCTTCCTATGAACTATATGAGGGAGAGTTGGGTAAACCAGCGAGATAAATTTCTCAATATGATGCCTGCCAATCCTAACTATGCTGCTGTTCTTCCGGAAACTTCAGGAGCTCATTCCTTGCAGATCTTACAGCCACCGGAAGCGTCAAGGGATGAGCGGGTGGGTAGGATGGAAGAGCCAGTTGTCCCTAAGGAAGGTGGCACCTCAAAGAAAAGACAGGGTGGGGGTGCACCAAAAGCCCCAAAAGCGAAAAAGCCCAGGAAGCCAAAGGATAATGCCAATCCTTCAGTTCCTCGTGTGAAGCCAGCAAAGAAGAGTTTGGACGTTGTGATAAATGGGATTAACATGGATATCTCTGGTATTCCAATTCCCGTCTGCTCATGCACTGGAGCTGCACAACAGTGTTATAGGTGGGGGTGTGGTGGTTGGCAATCTGCTTGTTGCACCACAAATGTATCTATGTATCCTCTGCCAATGAGTACGAAGCGACGCGGGGCAAGAATAGCTGGAAGAAAAATGAGTCAGGGTGCTTTCAAGAAGGTGCTGGAGAAGCTTGCAGCTGAAGGTTATAATTTTGCTAACCCAATTGATCTAAGGTCTCACTGGGCAAAACATGGTACCAACAAGTTCGTCACTCTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

273

Amino Acids

29.97

Weight (kDa)

9.87

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 272	2.6e-98	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14685 AT1G14685 AT1G14685 AT1G14685
fragaria_vesca	FvH4_4g35810
malus_domestica	MD13G1015100.v1.1 MD16G1012800.v1.1
prunus_persica	Prupe.1G338500_v2.0.a1 Prupe.1G338500_v2.0.a1
pyrus_communis	pycom13g01290 pycom16g01200
rosa_chinensis	RchiOBHm_Chr4g0445341
rosa_laevigata	RLG00000005747
rosa_multiflora	Rmu_sc0000050.1_g000011
rosa_roxburghii	Rroxscaffold_5G00385860
rosa_rugosa	Rorug04G0360900
rosa_samantha	Rh4AG421900 Rh4BG433900 Rh4CG448800 Rh4DG429900
rosa_wichuraiana	Rw4G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	791
AccB1I	GGYRCC	2 cut(s)	374, 791
AccBSI	CCGCTC	1 cut(s)	331
AccII	CGCG	3 cut(s)	78, 105, 666
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	331, 666
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	3 cut(s)	261, 444, 756
AfaI	GTAC	2 cut(s)	655, 793
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	97, 431
AleI	CACNNNNGTG	1 cut(s)	574
AluBI	AGCT	8 cut(s)	55, 137, 175, 284, 566, 680, 727, 734
AluI	AGCT	8 cut(s)	55, 137, 175, 284, 566, 680, 727, 734
Alw21I	GWGCWC	2 cut(s)	286, 406
Alw26I	GTCTC	1 cut(s)	777
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	268
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	4 cut(s)	52, 257, 566, 731
ApoI	RAATTY	1 cut(s)	221
Asp718I	GGTACC	1 cut(s)	791
AspLEI	GCGC	4 cut(s)	6, 78, 105, 128
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	2 cut(s)	374, 791
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	286, 406
BbvI	GCAGC	4 cut(s)	64, 244, 553, 743
BccI	CCATC	2 cut(s)	34, 337
BciT130I	CCWGG	2 cut(s)	99, 433
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	777
BfmI	CTRYAG	2 cut(s)	50, 111
BfoI	RGCGCY	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	648
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	4 cut(s)	53, 258, 567, 732
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	4 cut(s)	54, 259, 568, 733
Bme1390I	CCNGG	2 cut(s)	99, 433
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	376, 793
BmrFI	CCNGG	2 cut(s)	99, 433
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	787
BpmI	CTGGAG	2 cut(s)	582, 740
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	777
BsaJI	CCNNGG	4 cut(s)	97, 98, 146, 431
BsaWI	WCCGGW	2 cut(s)	268, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	353, 565, 782
Bse21I	CCTNAGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	99, 433
BseDI	CCNNGG	4 cut(s)	97, 98, 146, 431
BseGI	GGATG	2 cut(s)	331, 348
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	3 cut(s)	353, 565, 782
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	64, 244, 553, 743
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	3 cut(s)	78, 105, 666
BshNI	GGYRCC	2 cut(s)	374, 791
BsiHKAI	GWGCWC	2 cut(s)	286, 406
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	269, 311
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	777
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	286, 406
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	106, 297, 763
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	331, 666
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	3 cut(s)	78, 105, 666
BspLI	GGNNCC	2 cut(s)	376, 793
BspMAI	CTGCAG	2 cut(s)	54, 115
BspPI	GGATC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	374, 791
BspTNI	GGTCTC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	331
BsrI	ACTGG	3 cut(s)	353, 565, 782
BssECI	CCNNGG	4 cut(s)	97, 98, 146, 431
BssMI	GATC	3 cut(s)	106, 297, 763
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	99, 433
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	342, 482
BstC8I	GCNNGC	4 cut(s)	50, 240, 480, 729
BstDEI	CTNAG	5 cut(s)	44, 171, 363, 767, 812
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	331, 348
BstFNI	CGCG	3 cut(s)	78, 105, 666
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	4 cut(s)	6, 78, 105, 128
BstKTI	GATC	3 cut(s)	109, 300, 766
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	3 cut(s)	106, 297, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 410, 419, 436, 677, 724
BstNI	CCWGG	2 cut(s)	99, 433
BstSCI	CCNGG	2 cut(s)	97, 431
BstSFI	CTRYAG	2 cut(s)	50, 111
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	3 cut(s)	78, 105, 666
BstV1I	GCAGC	4 cut(s)	64, 244, 553, 743
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	331, 348
BtsIMutI	CAGTG	3 cut(s)	558, 581, 775
Cac8I	GCNNGC	4 cut(s)	50, 240, 480, 729
CfoI	GCGC	4 cut(s)	6, 78, 105, 128
CseI	GACGC	3 cut(s)	176, 306, 672
Csp6I	GTAC	2 cut(s)	654, 792
CviAII	CATG	6 cut(s)	58, 67, 118, 520, 555, 788
CviQI	GTAC	2 cut(s)	654, 792
DdeI	CTNAG	5 cut(s)	44, 171, 363, 767, 812
DpnI	GATC	3 cut(s)	108, 299, 765
DpnII	GATC	3 cut(s)	106, 297, 763
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	342, 482
EarI	CTCTTC	2 cut(s)	342, 482
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	777
Eco32I	GATATC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	3 cut(s)	261, 444, 756
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	97, 431
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	6 cut(s)	61, 70, 121, 523, 558, 791
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	6 cut(s)	57, 66, 117, 519, 554, 787
FauI	CCCGC	2 cut(s)	324, 659
Fnu4HI	GCNGC	4 cut(s)	53, 258, 567, 732
FokI	GGATG	2 cut(s)	338, 355
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	4 cut(s)	53, 258, 567, 732
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	4 cut(s)	5, 77, 104, 127
GluI	GCNGC	4 cut(s)	53, 258, 567, 732
GsuI	CTGGAG	2 cut(s)	582, 740
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	2 cut(s)	269, 311
HgaI	GACGC	3 cut(s)	176, 306, 672
HhaI	GCGC	4 cut(s)	6, 78, 105, 128
Hin1II	CATG	6 cut(s)	61, 70, 121, 523, 558, 791
Hin6I	GCGC	4 cut(s)	4, 76, 103, 126
HinP1I	GCGC	4 cut(s)	4, 76, 103, 126
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	2 cut(s)	269, 311
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	208, 404
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	4 cut(s)	149, 269, 279, 709
Hpy8I	GTNNAC	2 cut(s)	208, 404
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	4 cut(s)	362, 468, 706, 731
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	8 cut(s)	52, 113, 295, 404, 558, 569, 618, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 410, 419, 436, 677, 724
HpyF3I	CTNAG	5 cut(s)	44, 171, 363, 767, 812
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	6 cut(s)	61, 70, 121, 523, 558, 791
HspAI	GCGC	4 cut(s)	4, 76, 103, 126
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	795
Kzo9I	GATC	3 cut(s)	106, 297, 763
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	3 cut(s)	134, 281, 563
Lsp1109I	GCAGC	4 cut(s)	64, 244, 553, 743
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	14, 805
MalI	GATC	3 cut(s)	108, 299, 765
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	3 cut(s)	106, 297, 763
MboII	GAAGA	4 cut(s)	257, 359, 499, 696
MfeI	CAATTG	2 cut(s)	7, 759
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	286, 406
MluCI	AATT	5 cut(s)	7, 221, 540, 745, 759
MlyI	GAGTC	1 cut(s)	703
MnlI	CCTC	5 cut(s)	156, 186, 388, 477, 651
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	3 cut(s)	33, 84, 516
MslI	CAYNNNNRTG	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	2 cut(s)	269, 311
MspR9I	CCNGG	2 cut(s)	99, 433
MunI	CAATTG	2 cut(s)	7, 759
MvaI	CCWGG	2 cut(s)	99, 433
MvnI	CGCG	3 cut(s)	78, 105, 666
MwoI	GCNNNNNNNGC	6 cut(s)	134, 410, 419, 436, 677, 724
NdeII	GATC	3 cut(s)	106, 297, 763
NlaIII	CATG	6 cut(s)	61, 70, 121, 523, 558, 791
NlaIV	GGNNCC	2 cut(s)	376, 793
NmuCI	GTSAC	1 cut(s)	805
NsbI	TGCGCA	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	574
PasI	CCCWGGG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	54, 259, 568, 733
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	97, 431
PspGI	CCWGG	2 cut(s)	97, 431
PspN4I	GGNNCC	2 cut(s)	376, 793
PstI	CTGCAG	2 cut(s)	54, 115
PsuI	RGATCY	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	655, 793
RsaNI	GTAC	2 cut(s)	654, 792
RseI	CAYNNNNRTG	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	33, 84, 516
SatI	GCNGC	4 cut(s)	53, 258, 567, 732
Sau3AI	GATC	3 cut(s)	106, 297, 763
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	99, 433
SduI	GDGCHC	2 cut(s)	286, 406
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	2 cut(s)	50, 111
SmiMI	CAYNNNNRTG	1 cut(s)	574
Sse9I	AATT	5 cut(s)	7, 221, 540, 745, 759
SsiI	CCGC	2 cut(s)	331, 666
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	97, 431
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	1 cut(s)	501
TasI	AATT	5 cut(s)	7, 221, 540, 745, 759
Tru1I	TTAA	3 cut(s)	33, 84, 516
Tru9I	TTAA	3 cut(s)	33, 84, 516
TscAI	CASTG	3 cut(s)	565, 581, 782
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	52, 257, 566, 731
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	565, 581, 782
VneI	GTGCAC	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.