AT1G15280

CASC3/Barentsz eIF4AIII binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005735
Physical Location & Seq
Forward (+)
5252285 .. 5256863
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15280.2

Sequence Viewer

Length: 1755 bp
ATGGCGACATCTGAAGCGGAATATGAGAGTGATCCCGAGGAGCTGAACCGCTCCTTGGCGACGAGGAGGAGAGAAGCGAGTGATGACGATAGTGATGATGATGATGCTGTTAGAGATGTGAAAAATCAGAGGGCTGTGGTTGATTCTGACCTATCTGATGAAGAAGTTGGTACTGTGAAGTATGATAATGACGAAGATGGGGAGGATAGTTATGAGGATGATGAGGAGGAAAGTGGTGGAGGAATCGATAATGATAAGAGTGGTGTGGTGAAGGAGGCTGGTGATATGAATGGAGAGGAAGAAAATGAAAAGGAGAAGTTACAAGCTGCTGTTCCCACTGGTGGAGCTTTTTATATGCATGATGATAGGTTTCAGGAAATGTCTGCTGGCGGAAACAGGCGAATGCGTGGTGGGAGAAGACAGTGGGGCTCTGGAGAGGAAAGAAAATGGGGACATGACAAATTTGAAGAGATGAATACTGGGGAAAAACATTCTGATAGGATGTCTAGAGGCCGATTCAGAGGTCATGGTCGGGGTAGGGGACAAGGGCGTGGATACGCTAGAGGGAGCAGTTCTAACACATTAACCAGTAGTGGACAGCAAATTTATGTTCCTAAAGCTGTCTCACGAGGGAGAGGACCCAGGAAATCCGACACTCCCCTGAGGAATGAAAATCAAGCACATTCTGAGCAAAGCAAACAGTTACGAAATTCTAATGGGTCTCAAAACTCTCGTGAGAAAATGCCACACCTCGATTCACGGCGTTCACCAACTGCCCCTGCTAAAACTGAGAATCAAGGTGCCCATGCCAAAAAGAATGTAGCTGTGTCAAGTTTGAGTTCCGCTTCTCCTCCATTTTATCCTTCAGCGCCGTCCAGTAATGTGGTACATGGTATACAAGTTAGTATGGAAAGACTCCACACAAATGAAAGTGTCACGCCTTCTGGGAAGAAGTATAGGAATACAAAATCCGGTTATTCACCAGTTTGGACTGCCAAGACTCTTCAGTCCACTAGTCAAGGTAGAGGTGCACCTGCTGCTGGGAACACGTTTTACCCGCAATCTCATAGTCAAGGTGACAGATTTTCATCACCAATGCAACTCAATGGAGATTCAAAAGGCACTGGCCAAAGACCTTCCGGCCAGGGTTTTGATCAGCACTCTGCTGTTGTTAGATCATTGTCTTCCTCTCCCCAGAAAACTAGCTTATCAAGAAATCGGTATCCTCCTGATGAAATAGAATCTTCATCGGAAACAGCTGCATTGATTGCTAAAGGAAAAGGGACTCTCAGGCCTGGTGGAAGCAGCTCTTTTATGTATAGTGGATCCCAAATGATGGGGCGGCCAGAAAGTTTGACATCTGCTGACAATTCTAATTTCCCTACTTTTCTGCCTGTTATGCAATTTGGTGGTCAGCATGGTGGGGTTCCGACTTTTGGAATGGCTTATCCAGGATATGTCCAGTCTGAAGATGGTGTTAGAAATCCGGAGATGACATGGATGCCAGTTTTAGCTGGTCCAGGAGCTTTAGGGGCTTCATACAGTCCACCACCATATGCGGCTCACCAAGCACACAACCCAGGGTTACCTTCCTCTGCGGGATTCTCCAGCAAAGACAGTAGCACAAATACCCTTAATGACCTGGTCAAACCCATGGAAAGTCCTGAGGTTGCAGAGAATGGGGTTTCAGAACGGCAAAGCAACAATCCAAGCAAGCAGCCTCGTAGGTACTCGGAGATGACCTTTAGCAAGTGA

Protein Analysis

584

Amino Acids

63.31

Weight (kDa)

6.12

Isoelectric Point (pI)

64.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Btz PF09405 76 - 179 5.6e-23 CASC3/Barentsz eIF4AIII binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1042
AasI GACNNNNNNGTC 1 cut(s) 1006
Acc36I ACCTGC 1 cut(s) 1042
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 1336
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 895
AccIII TCCGGA 1 cut(s) 1486
AciI CCGC 8 cut(s) 17, 49, 390, 843, 1058, 1342, 1559, 1598
AclWI GGATC 3 cut(s) 26, 1320, 1333
AcoI YGGCCR 3 cut(s) 1126, 1141, 1343
AcsI RAATTY 3 cut(s) 461, 603, 709
AcuI CTGAAG 4 cut(s) 33, 849, 989, 1488
AfaI GTAC 3 cut(s) 172, 888, 1730
AfiI CCNNNNNNNGG 5 cut(s) 55, 341, 1040, 1336, 1436
AflIII ACRYGT 1 cut(s) 1047
AgsI TTSAA 2 cut(s) 467, 1116
AhlI ACTAGT 1 cut(s) 1013
AjnI CCWGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
Alw21I GWGCWC 1 cut(s) 1033
Alw26I GTCTC 2 cut(s) 628, 726
Alw44I GTGCAC 1 cut(s) 1029
AlwI GGATC 3 cut(s) 26, 1320, 1333
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 1486
AoxI GGCC 5 cut(s) 511, 1126, 1141, 1292, 1343
ApaLI GTGCAC 1 cut(s) 1029
ApeKI GCWGC 5 cut(s) 326, 1037, 1259, 1305, 1717
ApoI RAATTY 3 cut(s) 461, 603, 709
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 638, 1517
AsuHPI GGTGA 7 cut(s) 280, 293, 759, 972, 1083, 1088, 1556
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 2 cut(s) 638, 1517
AxyI CCTNAGG 2 cut(s) 662, 1665
BaeGI GKGCMC 2 cut(s) 805, 1033
BalI TGGCCA 1 cut(s) 1128
BamHI GGATCC 1 cut(s) 1325
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 431
BauI CACGAG 2 cut(s) 627, 732
BbsI GAAGAC 2 cut(s) 424, 1176
Bbv12I GWGCWC 1 cut(s) 1033
BbvI GCAGC 5 cut(s) 313, 1024, 1246, 1317, 1729
BccI CCATC 3 cut(s) 191, 1330, 1466
BceAI ACGGC 3 cut(s) 776, 856, 1709
BciT130I CCWGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
BciVI GTATCC 2 cut(s) 548, 1233
BclI TGATCA 1 cut(s) 1153
BcoDI GTCTC 2 cut(s) 628, 726
BcuI ACTAGT 1 cut(s) 1013
BfaI CTAG 4 cut(s) 507, 561, 1014, 1203
BfoI RGCGCY 1 cut(s) 872
BfuAI ACCTGC 1 cut(s) 1042
BfuI GTATCC 2 cut(s) 548, 1233
BisI GCNGC 7 cut(s) 327, 1038, 1260, 1306, 1343, 1560, 1718
BlsI GCNGC 7 cut(s) 328, 1039, 1261, 1307, 1344, 1561, 1719
Bme1390I CCNGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
Bme18I GGWCC 2 cut(s) 638, 1517
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 638, 1517
BmiI GGNNCC 4 cut(s) 640, 802, 1327, 1428
BmrFI CCNGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 94, 1491
BmuI ACTGGG 1 cut(s) 489
BpiI GAAGAC 2 cut(s) 424, 1176
BpmI CTGGAG 2 cut(s) 453, 1591
Bsa29I ATCGAT 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 1087
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 7 cut(s) 36, 54, 641, 1144, 1579, 1580, 1653
BsaWI WCCGGW 2 cut(s) 971, 1486
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 341, 1040, 1336, 1436
Bse1I ACTGG 8 cut(s) 343, 484, 588, 876, 983, 1129, 1462, 1505
Bse21I CCTNAGG 2 cut(s) 662, 1665
Bse8I GATNNNNATC 1 cut(s) 1087
BseAI TCCGGA 1 cut(s) 1486
BseBI CCWGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 7 cut(s) 36, 54, 641, 1144, 1579, 1580, 1653
BseGI GGATG 3 cut(s) 223, 507, 1506
BseJI GATNNNNATC 1 cut(s) 1087
BseLI CCNNNNNNNGG 5 cut(s) 55, 341, 1040, 1336, 1436
BseMII CTCAG 5 cut(s) 653, 678, 780, 1303, 1656
BseNI ACTGG 8 cut(s) 343, 484, 588, 876, 983, 1129, 1462, 1505
BseRI GAGGAG 5 cut(s) 53, 79, 82, 239, 840
BseSI GKGCMC 2 cut(s) 805, 1033
BseXI GCAGC 5 cut(s) 313, 1024, 1246, 1317, 1729
BseYI CCCAGC 1 cut(s) 1040
BshFI GGCC 5 cut(s) 513, 1128, 1143, 1294, 1345
BshNI GGYRCC 1 cut(s) 800
BshVI ATCGAT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 1033
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 972, 1140, 1487
BslFI GGGAC 3 cut(s) 465, 555, 1297
BslI CCNNNNNNNGG 5 cut(s) 55, 341, 1040, 1336, 1436
BsmAI GTCTC 2 cut(s) 628, 726
BsmFI GGGAC 3 cut(s) 465, 555, 1297
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 5 cut(s) 513, 1128, 1143, 1294, 1345
Bso31I GGTCTC 1 cut(s) 726
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 431, 805, 1033
Bsp13I TCCGGA 1 cut(s) 1486
Bsp143I GATC 4 cut(s) 31, 1153, 1175, 1325
Bsp19I CCATGG 1 cut(s) 1653
BspACI CCGC 8 cut(s) 17, 49, 390, 843, 1058, 1342, 1559, 1598
BspANI GGCC 5 cut(s) 513, 1128, 1143, 1294, 1345
BspCNI CTCAG 5 cut(s) 654, 679, 781, 1302, 1657
BspDI ATCGAT 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 1486
BspLI GGNNCC 4 cut(s) 640, 802, 1327, 1428
BspMI ACCTGC 1 cut(s) 1042
BspPI GGATC 3 cut(s) 26, 1320, 1333
BspT107I GGYRCC 1 cut(s) 800
BspTNI GGTCTC 1 cut(s) 726
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 8 cut(s) 343, 484, 588, 876, 983, 1129, 1462, 1505
BssECI CCNNGG 7 cut(s) 36, 54, 641, 1144, 1579, 1580, 1653
BssMI GATC 4 cut(s) 31, 1153, 1175, 1325
BssNAI GTATAC 1 cut(s) 896
BssSI CACGAG 2 cut(s) 627, 732
BssT1I CCWWGG 2 cut(s) 54, 1653
Bst1107I GTATAC 1 cut(s) 896
Bst2BI CACGAG 2 cut(s) 627, 732
Bst2UI CCWGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
Bst4CI ACNGT 5 cut(s) 175, 423, 702, 1544, 1619
Bst6I CTCTTC 2 cut(s) 462, 1008
BstAPI GCANNNNNTGC 2 cut(s) 1037, 1268
BstC8I GCNNGC 2 cut(s) 388, 1715
BstDEI CTNAG 5 cut(s) 662, 687, 789, 1289, 1665
BstDSI CCRYGG 1 cut(s) 1653
BstEII GGTNACC 1 cut(s) 1584
BstF5I GGATG 3 cut(s) 223, 507, 1506
BstH2I RGCGCY 1 cut(s) 872
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 4 cut(s) 34, 1156, 1178, 1328
BstMAI GTCTC 2 cut(s) 628, 726
BstMBI GATC 4 cut(s) 31, 1153, 1175, 1325
BstMWI GCNNNNNNNGC 5 cut(s) 1037, 1268, 1399, 1532, 1568
BstNI CCWGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
BstPI GGTNACC 1 cut(s) 1584
BstSCI CCNGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
BstSLI GKGCMC 2 cut(s) 805, 1033
BstV1I GCAGC 5 cut(s) 313, 1024, 1246, 1317, 1729
BstV2I GAAGAC 2 cut(s) 424, 1176
BstX2I RGATCY 1 cut(s) 1325
BstXI CCANNNNNNTGG 1 cut(s) 883
BstYI RGATCY 1 cut(s) 1325
BstZ17I GTATAC 1 cut(s) 896
Bsu15I ATCGAT 1 cut(s) 246
Bsu36I CCTNAGG 2 cut(s) 662, 1665
BsuI GTATCC 2 cut(s) 548, 1233
BsuRI GGCC 5 cut(s) 513, 1128, 1143, 1294, 1345
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 1653
BtsCI GGATG 3 cut(s) 223, 507, 1506
BtsIMutI CAGTG 3 cut(s) 336, 428, 1122
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 2 cut(s) 388, 1715
CfoI GCGC 1 cut(s) 871
Cfr13I GGNCC 2 cut(s) 638, 1517
ClaI ATCGAT 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 1641
Csp6I GTAC 3 cut(s) 171, 887, 1729
CviAII CATG 8 cut(s) 359, 455, 527, 806, 890, 1418, 1497, 1654
CviQI GTAC 3 cut(s) 171, 887, 1729
DdeI CTNAG 5 cut(s) 662, 687, 789, 1289, 1665
DpnI GATC 4 cut(s) 33, 1155, 1177, 1327
DpnII GATC 4 cut(s) 31, 1153, 1175, 1325
DrdI GACNNNNNNGTC 1 cut(s) 1006
DseDI GACNNNNNNGTC 1 cut(s) 1006
EaeI YGGCCR 3 cut(s) 1126, 1141, 1343
Eam1104I CTCTTC 2 cut(s) 462, 1008
EarI CTCTTC 2 cut(s) 462, 1008
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 54, 1653
Eco147I AGGCCT 1 cut(s) 1294
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 638, 1517
Eco57I CTGAAG 4 cut(s) 33, 849, 989, 1488
Eco81I CCTNAGG 2 cut(s) 662, 1665
Eco88I CYCGRG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 1584
EcoO109I RGGNCCY 1 cut(s) 638
EcoO65I GGTNACC 1 cut(s) 1584
EcoRII CCWGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
EcoT14I CCWWGG 2 cut(s) 54, 1653
EcoT22I ATGCAT 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 2 cut(s) 54, 1653
FaeI CATG 8 cut(s) 362, 458, 530, 809, 893, 1421, 1500, 1657
FalI AAGNNNNNCTT 2 cut(s) 1294, 1326
FaqI GGGAC 3 cut(s) 465, 555, 1297
FatI CATG 8 cut(s) 358, 454, 526, 805, 889, 1417, 1496, 1653
FauI CCCGC 2 cut(s) 1065, 1591
FauNDI CATATG 1 cut(s) 1555
FbaI TGATCA 1 cut(s) 1153
FblI GTMKAC 1 cut(s) 895
Fnu4HI GCNGC 7 cut(s) 327, 1038, 1260, 1306, 1343, 1560, 1718
FokI GGATG 3 cut(s) 230, 514, 1513
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 7 cut(s) 327, 1038, 1260, 1306, 1343, 1560, 1718
FspBI CTAG 4 cut(s) 507, 561, 1014, 1203
GlaI GCGC 1 cut(s) 870
GluI GCNGC 7 cut(s) 327, 1038, 1260, 1306, 1343, 1560, 1718
GsaI CCCAGC 1 cut(s) 1044
GsuI CTGGAG 2 cut(s) 453, 1591
HaeII RGCGCY 1 cut(s) 872
HaeIII GGCC 5 cut(s) 513, 1128, 1143, 1294, 1345
HapII CCGG 3 cut(s) 972, 1140, 1487
HhaI GCGC 1 cut(s) 871
Hin1II CATG 8 cut(s) 362, 458, 530, 809, 893, 1421, 1500, 1657
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HpaII CCGG 3 cut(s) 972, 1140, 1487
HphI GGTGA 7 cut(s) 280, 293, 759, 972, 1083, 1088, 1556
Hpy166II GTNNAC 6 cut(s) 596, 767, 896, 1011, 1031, 1547
Hpy8I GTNNAC 6 cut(s) 596, 767, 896, 1011, 1031, 1547
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 5 cut(s) 265, 873, 951, 1146, 1599
HpyCH4III ACNGT 5 cut(s) 175, 423, 702, 1544, 1619
HpyCH4IV ACGT 1 cut(s) 1049
HpyCH4V TGCA 6 cut(s) 358, 1031, 1099, 1262, 1402, 1673
HpyF10VI GCNNNNNNNGC 5 cut(s) 1037, 1268, 1399, 1532, 1568
HpyF3I CTNAG 5 cut(s) 662, 687, 789, 1289, 1665
HpySE526I ACGT 1 cut(s) 1049
Hsp92II CATG 8 cut(s) 362, 458, 530, 809, 893, 1421, 1500, 1657
HspAI GCGC 1 cut(s) 869
Kpn2I TCCGGA 1 cut(s) 1486
Ksp22I TGATCA 1 cut(s) 1153
Kzo9I GATC 4 cut(s) 31, 1153, 1175, 1325
LmnI GCTCC 5 cut(s) 40, 56, 344, 567, 1523
Lsp1109I GCAGC 5 cut(s) 313, 1024, 1246, 1317, 1729
LweI GCATC 2 cut(s) 94, 1491
MabI ACCWGGT 1 cut(s) 1641
MaeI CTAG 4 cut(s) 507, 561, 1014, 1203
MaeII ACGT 1 cut(s) 1049
MaeIII GTNAC 5 cut(s) 318, 702, 934, 1076, 1584
MalI GATC 4 cut(s) 33, 1155, 1177, 1327
MbiI CCGCTC 1 cut(s) 51
MboI GATC 4 cut(s) 31, 1153, 1175, 1325
MflI RGATCY 1 cut(s) 1325
MhlI GDGCHC 3 cut(s) 431, 805, 1033
MlsI TGGCCA 1 cut(s) 1128
MluCI AATT 6 cut(s) 461, 603, 709, 1369, 1375, 1403
MluNI TGGCCA 1 cut(s) 1128
MlyI GAGTC 3 cut(s) 909, 994, 1279
MmeI TCCRAC 2 cut(s) 675, 1454
Mox20I TGGCCA 1 cut(s) 1128
Mph1103I ATGCAT 1 cut(s) 360
MroI TCCGGA 1 cut(s) 1486
MscI TGGCCA 1 cut(s) 1128
MseI TTAA 2 cut(s) 584, 1635
MslI CAYNNNNRTG 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 1128
MspA1I CMGCKG 1 cut(s) 1259
MspI CCGG 3 cut(s) 972, 1140, 1487
MspR9I CCNGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
MwoI GCNNNNNNNGC 5 cut(s) 1037, 1268, 1399, 1532, 1568
NcoI CCATGG 1 cut(s) 1653
NdeI CATATG 1 cut(s) 1555
NdeII GATC 4 cut(s) 31, 1153, 1175, 1325
NlaIII CATG 8 cut(s) 362, 458, 530, 809, 893, 1421, 1500, 1657
NlaIV GGNNCC 4 cut(s) 640, 802, 1327, 1428
NmuCI GTSAC 2 cut(s) 934, 1076
NsiI ATGCAT 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 1042
PasI CCCWGGG 1 cut(s) 1580
PceI AGGCCT 1 cut(s) 1294
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 8 cut(s) 143, 243, 516, 755, 793, 1112, 1241, 1602
PflFI GACNNNGTC 1 cut(s) 1643
PflMI CCANNNNNTGG 1 cut(s) 1336
PfoI TCCNGGA 2 cut(s) 1450, 1519
PkrI GCNGC 7 cut(s) 328, 1039, 1261, 1307, 1344, 1561, 1719
PleI GAGTC 3 cut(s) 909, 994, 1279
PpsI GAGTC 3 cut(s) 909, 994, 1279
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
PspEI GGTNACC 1 cut(s) 1584
PspFI CCCAGC 1 cut(s) 1040
PspGI CCWGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
PspN4I GGNNCC 4 cut(s) 640, 802, 1327, 1428
PspPI GGNCC 2 cut(s) 638, 1517
PspPPI RGGWCCY 1 cut(s) 638
PsrI GAACNNNNNNTAC 2 cut(s) 1037, 1069
PsuI RGATCY 1 cut(s) 1325
PsyI GACNNNGTC 1 cut(s) 1643
PvuII CAGCTG 1 cut(s) 1259
RsaI GTAC 3 cut(s) 172, 888, 1730
RsaNI GTAC 3 cut(s) 171, 887, 1729
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 2 cut(s) 584, 1635
SatI GCNGC 7 cut(s) 327, 1038, 1260, 1306, 1343, 1560, 1718
Sau3AI GATC 4 cut(s) 31, 1153, 1175, 1325
Sau96I GGNCC 2 cut(s) 638, 1517
SchI GAGTC 3 cut(s) 909, 994, 1279
ScrFI CCNGG 7 cut(s) 643, 1145, 1296, 1452, 1521, 1581, 1643
SduI GDGCHC 3 cut(s) 431, 805, 1033
SexAI ACCWGGT 1 cut(s) 1641
SfaNI GCATC 2 cut(s) 94, 1491
SinI GGWCC 2 cut(s) 638, 1517
SmiMI CAYNNNNRTG 1 cut(s) 924
SpeI ACTAGT 1 cut(s) 1013
Sse9I AATT 6 cut(s) 461, 603, 709, 1369, 1375, 1403
SseBI AGGCCT 1 cut(s) 1294
SsiI CCGC 8 cut(s) 17, 49, 390, 843, 1058, 1342, 1559, 1598
SspMI CTAG 4 cut(s) 507, 561, 1014, 1203
StuI AGGCCT 1 cut(s) 1294
StyD4I CCNGG 7 cut(s) 641, 1143, 1294, 1450, 1519, 1579, 1641
StyI CCWWGG 2 cut(s) 54, 1653
TaaI ACNGT 5 cut(s) 175, 423, 702, 1544, 1619
TaiI ACGT 1 cut(s) 1052
TaqI TCGA 2 cut(s) 246, 753
TasI AATT 6 cut(s) 461, 603, 709, 1369, 1375, 1403
TauI GCSGC 2 cut(s) 1345, 1562
TfiI GAWTC 8 cut(s) 143, 243, 516, 755, 793, 1112, 1241, 1602
Tru1I TTAA 2 cut(s) 584, 1635
Tru9I TTAA 2 cut(s) 584, 1635
TscAI CASTG 3 cut(s) 343, 428, 1129
TseFI GTSAC 2 cut(s) 934, 1076
TseI GCWGC 5 cut(s) 326, 1037, 1259, 1305, 1717
Tsp45I GTSAC 2 cut(s) 934, 1076
TspRI CASTG 3 cut(s) 343, 428, 1129
Tth111I GACNNNGTC 1 cut(s) 1643
Van91I CCANNNNNTGG 1 cut(s) 1336
VneI GTGCAC 1 cut(s) 1029
VpaK11BI GGWCC 2 cut(s) 638, 1517
XapI RAATTY 3 cut(s) 461, 603, 709
XbaI TCTAGA 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 1469
XmiI GTMKAC 1 cut(s) 895
XspI CTAG 4 cut(s) 507, 561, 1014, 1203
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.