Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005735

Physical Location & Seq

Genomic Coordinates Forward (+)

23640654 .. 23644850

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1197400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTGCCCCAAACCAATGCATTGGAGAGAGGAAAAGAACATAGCTGAATCTGTCGGTATGAACAAGCTTTATATAAATGACTCTACCAATCCAGCTGCTGGGAAGACTTTGACCAACATAAAAATGTCACCTTCTGGGTCATCATTTGTCAATACTACTCAAGCTCCTCAGTCAAGGGTTCAAGGAAGGGGTGTTATCTCAGGACAAATGAGTTATCAACCGGTGTCTCAGAACCAAATGACAAGAGCTTCTCCATCCACACATCTTCATGCTGGTCAGCGCAATCCTGCTCAAAATCGATCTCAACTGGCTCTGCAAGGTCCTGCTCAGCAGATGGGACAACATCCTGGGAGTGGATCTCAGGCTTCCTCTCCACCCAACACAACCATGTCATCAAATTCCTTCGAATCAGGAGAAGTTGAATCACCTTCAGATTCAAGCAAATCTAAAGGTGCCCTGGTTGCAAAGGGAAAAGGCAGTGTTCAGGGTAGTGCAAGGGGCACTATTTCTTATGGCGGAGCTCCAGTTACGGGACCCACTGGGAGTATGGGTGTTAATCATGATCAGAACTTCCCTGGTGCTCCAGCCTTTTTGCCTGTCATGCAATTTGGGGGCCAGCATACTGGGGGTATGGGAGTTCCTGCTGTTGGCATGGCGTTCCCTGGATATGTTGCTCAGCCACAACTTGGTGGGTTTAGGAAATTCTGGCGAAATGACATGATCTCTGGTGATAATTGTTTGAATTGTTTTAGGTTACCTGTATTGGCGGGTGCTGCAGGAGCATTGGGGGCAACATATTGTCCTCCATATATTACTGTTGATGGTTCTTACCATGGTCGCCCATCTGGACAAACATCTTCTGTGGGTTCCCTGAGCAAAGAGAATAATGCAAATAAAACCAATAACGAATGGAAGCCTTCACAAAAGCCTGAGATTGTTGGAGATGAGTATGGGCAGCGACAAAACAAGCCTCGTAGTGCAGATATTCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Btz

Protein Analysis

332

Amino Acids

34.81

Weight (kDa)

9.62

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15280 AT1G15280 AT1G80000 AT1G80000 AT1G80000 AT1G80000
fragaria_vesca	FvH4_6g30960 FvH4_6g30960 FvH4_6g30960
malus_domestica	MD00G1201000.v1.1 MD09G1214900.v1.1 MD17G1197300.v1.1 MD17G1197400.v1.1
prunus_persica	Prupe.3G073300_v2.0.a1 Prupe.3G073300_v2.0.a1
pyrus_communis	pycom09g13170 pycom17g20230
rosa_chinensis	RchiOBHm_Chr2g0137581
rosa_laevigata	RLG00000019663
rosa_multiflora	Rmu_co8200514.1_g000001 Rmu_sc0000765.1_g000014
rosa_roxburghii	Rroxscaffold_2G00107000
rosa_rugosa	Rorug02G0343500
rosa_samantha	Rh2AG391200 Rh2BG398700 Rh2CG378200 Rh2DG413800
rosa_wichuraiana	Rw2G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	2 cut(s)	98, 686
AciI	CCGC	2 cut(s)	516, 767
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	397, 701
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	5 cut(s)	98, 353, 530, 647, 686
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	4 cut(s)	182, 422, 438, 742
AjnI	CCWGG	4 cut(s)	346, 456, 574, 661
AluBI	AGCT	6 cut(s)	44, 67, 95, 164, 248, 521
AluI	AGCT	6 cut(s)	44, 67, 95, 164, 248, 521
Alw21I	GWGCWC	2 cut(s)	523, 583
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	3 cut(s)	95, 773, 955
ApoI	RAATTY	2 cut(s)	397, 701
AsiGI	ACCGGT	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	320, 533, 613
AsuHPI	GGTGA	3 cut(s)	120, 417, 740
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	320, 533
BaeGI	GKGCMC	3 cut(s)	8, 457, 503
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	523, 583
BbvI	GCAGC	3 cut(s)	82, 760, 967
BccI	CCATC	4 cut(s)	262, 328, 815, 850
BciT130I	CCWGG	4 cut(s)	348, 458, 576, 663
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	3 cut(s)	96, 774, 956
BlpI	GCTNAGC	2 cut(s)	327, 675
BlsI	GCNGC	3 cut(s)	97, 775, 957
Bme1390I	CCNGG	4 cut(s)	348, 458, 576, 663
Bme18I	GGWCC	2 cut(s)	320, 533
BmgT120I	GGNCC	3 cut(s)	320, 533, 613
BmiI	GGNNCC	5 cut(s)	454, 534, 535, 614, 868
BmrFI	CCNGG	4 cut(s)	348, 458, 576, 663
BmrI	ACTGGG	2 cut(s)	549, 633
BmuI	ACTGGG	2 cut(s)	549, 633
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	2 cut(s)	507, 567
Bpu10I	CCTNAGC	1 cut(s)	872
Bpu1102I	GCTNAGC	2 cut(s)	327, 675
Bpu14I	TTCGAA	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	298
BsaJI	CCNNGG	5 cut(s)	347, 456, 574, 661, 832
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	6 cut(s)	148, 178, 510, 535, 540, 565
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 353, 530, 647, 686
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	4 cut(s)	312, 524, 544, 628
BseBI	CCWGG	4 cut(s)	348, 458, 576, 663
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	5 cut(s)	347, 456, 574, 661, 832
BseGI	GGATG	2 cut(s)	254, 343
BseLI	CCNNNNNNNGG	5 cut(s)	98, 353, 530, 647, 686
BseMII	CTCAG	8 cut(s)	182, 213, 242, 341, 374, 689, 863, 921
BseNI	ACTGG	4 cut(s)	312, 524, 544, 628
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	3 cut(s)	8, 457, 503
BseXI	GCAGC	3 cut(s)	82, 760, 967
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	615
BshNI	GGYRCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	523, 583
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	351, 546
BslI	CCNNNNNNNGG	5 cut(s)	98, 353, 530, 647, 686
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	351, 546
BsnI	GGCC	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	5 cut(s)	8, 457, 503, 523, 583
Bsp143I	GATC	4 cut(s)	299, 356, 562, 720
Bsp1720I	GCTNAGC	2 cut(s)	327, 675
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	2 cut(s)	516, 767
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	8 cut(s)	181, 212, 241, 340, 373, 688, 864, 922
BspDI	ATCGAT	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	5 cut(s)	454, 534, 535, 614, 868
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	312, 524, 544, 628
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	5 cut(s)	347, 456, 574, 661, 832
BssMI	GATC	4 cut(s)	299, 356, 562, 720
BssT1I	CCWWGG	1 cut(s)	832
Bst2UI	CCWGG	4 cut(s)	348, 458, 576, 663
Bst4CI	ACNGT	1 cut(s)	817
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	8 cut(s)	168, 199, 228, 327, 360, 675, 872, 930
BstDSI	CCRYGG	1 cut(s)	832
BstEII	GGTNACC	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	254, 343
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	4 cut(s)	302, 359, 565, 723
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	4 cut(s)	299, 356, 562, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 601, 773, 779, 788
BstNI	CCWGG	4 cut(s)	348, 458, 576, 663
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	4 cut(s)	346, 456, 574, 661
BstSFI	CTRYAG	1 cut(s)	774
BstSLI	GKGCMC	3 cut(s)	8, 457, 503
BstV1I	GCAGC	3 cut(s)	82, 760, 967
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	2 cut(s)	21, 623
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	615
BsuTUI	ATCGAT	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	254, 343
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	484, 537
Cac8I	GCNNGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	3 cut(s)	320, 533, 613
ClaI	ATCGAT	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	7 cut(s)	269, 388, 560, 601, 652, 718, 833
DdeI	CTNAG	8 cut(s)	168, 199, 228, 327, 360, 675, 872, 930
DpnI	GATC	4 cut(s)	301, 358, 564, 722
DpnII	GATC	4 cut(s)	299, 356, 562, 720
EciI	GGCGGA	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	832
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	320, 533
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	2 cut(s)	320, 533
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	4 cut(s)	346, 456, 574, 661
EcoT14I	CCWWGG	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	832
FaeI	CATG	7 cut(s)	272, 391, 563, 604, 655, 721, 836
FaqI	GGGAC	2 cut(s)	351, 546
FatI	CATG	7 cut(s)	268, 387, 559, 600, 651, 717, 832
FauI	CCCGC	1 cut(s)	760
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	96, 774, 956
FokI	GGATG	2 cut(s)	241, 330
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	96, 774, 956
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	3 cut(s)	96, 774, 956
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	507, 567
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	7 cut(s)	272, 391, 563, 604, 655, 721, 836
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	5 cut(s)	47, 80, 407, 422, 434
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	120, 417, 740
Hpy188I	TCNGA	3 cut(s)	231, 433, 567
Hpy188III	TCNNGA	4 cut(s)	201, 411, 560, 846
HpyAV	CCTTC	5 cut(s)	141, 180, 412, 438, 927
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4V	TGCA	8 cut(s)	19, 316, 464, 494, 604, 776, 890, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 601, 773, 779, 788
HpyF3I	CTNAG	8 cut(s)	168, 199, 228, 327, 360, 675, 872, 930
Hsp92II	CATG	7 cut(s)	272, 391, 563, 604, 655, 721, 836
HspAI	GCGC	1 cut(s)	280
KflI	GGGWCCC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	299, 356, 562, 720
LmnI	GCTCC	5 cut(s)	169, 518, 526, 586, 779
Lsp1109I	GCAGC	3 cut(s)	82, 760, 967
MaeIII	GTNAC	3 cut(s)	126, 526, 753
MalI	GATC	4 cut(s)	301, 358, 564, 722
MboI	GATC	4 cut(s)	299, 356, 562, 720
MboII	GAAGA	3 cut(s)	115, 257, 849
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	5 cut(s)	8, 457, 503, 523, 583
MluCI	AATT	5 cut(s)	397, 605, 701, 733, 742
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	919
MnlI	CCTC	5 cut(s)	22, 177, 379, 813, 981
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	3 cut(s)	122, 267, 386
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	4 cut(s)	348, 458, 576, 663
MvaI	CCWGG	4 cut(s)	348, 458, 576, 663
MwoI	GCNNNNNNNGC	5 cut(s)	461, 601, 773, 779, 788
NcoI	CCATGG	1 cut(s)	832
NdeII	GATC	4 cut(s)	299, 356, 562, 720
NlaIII	CATG	7 cut(s)	272, 391, 563, 604, 655, 721, 836
NlaIV	GGNNCC	5 cut(s)	454, 534, 535, 614, 868
NmuCI	GTSAC	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	47, 407, 422, 434
PflMI	CCANNNNNTGG	2 cut(s)	98, 686
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	97, 775, 957
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	2 cut(s)	320, 533
Psp124BI	GAGCTC	1 cut(s)	523
Psp5II	RGGWCCY	2 cut(s)	320, 533
Psp6I	CCWGG	4 cut(s)	346, 456, 574, 661
PspEI	GGTNACC	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	4 cut(s)	346, 456, 574, 661
PspN4I	GGNNCC	5 cut(s)	454, 534, 535, 614, 868
PspPI	GGNCC	3 cut(s)	320, 533, 613
PspPPI	RGGWCCY	2 cut(s)	320, 533
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	3 cut(s)	122, 267, 386
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	3 cut(s)	96, 774, 956
Sau3AI	GATC	4 cut(s)	299, 356, 562, 720
Sau96I	GGNCC	3 cut(s)	320, 533, 613
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	348, 458, 576, 663
SduI	GDGCHC	5 cut(s)	8, 457, 503, 523, 583
SfcI	CTRYAG	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	2 cut(s)	320, 533
SmiMI	CAYNNNNRTG	3 cut(s)	122, 267, 386
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	5 cut(s)	397, 605, 701, 733, 742
SsiI	CCGC	2 cut(s)	516, 767
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	4 cut(s)	346, 456, 574, 661
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	1 cut(s)	817
TaqI	TCGA	2 cut(s)	298, 405
TasI	AATT	5 cut(s)	397, 605, 701, 733, 742
TfiI	GAWTC	4 cut(s)	47, 407, 422, 434
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	2 cut(s)	484, 544
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	3 cut(s)	95, 773, 955
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	74, 257
TspRI	CASTG	2 cut(s)	484, 544
Van91I	CCANNNNNTGG	2 cut(s)	98, 686
VpaK11BI	GGWCC	2 cut(s)	320, 533
XapI	RAATTY	2 cut(s)	397, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.