Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005735

Physical Location & Seq

Genomic Coordinates Reverse (-)

42828566 .. 42829108

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACATCAACAACCCTTCTAAAGATAGCCTCAGAATCAACAGCTGCCCTTGCTTATCTGCATTCTGCATCAATCATCCATGGAAATGTCAAGTCTTCCAACATATTGTTAACTCATTGTTTTGTGGCCAAAGTCATCGGTTTTGGACCTTCGAGGTTAGTCCCTAGTAATGAATCACAGATAAGCACATTGGTTCGGAGGACACTAGGCTATCTAGACCCGGAGTATTTTCATAAAGGCCAATTGACAGATAAGAGCGATGTTTACAGCTTTGGAATGGTTTTGTTAGAGATTGTAACAGGAGAGAAGCCAATATCATTTGGTAGACCAGAAAGTCAAAGAATCATGTCTTCCCATTTTGTATCGTCCATGGAGTTACAAAGTGGTCTGTTTGATCAGATTGTTGGGTCACAAGTCATAAAACAGGGACACAGAGAACAAGTCAGAGCAGTAGCTGAGCTTGCAAAGAGATGCCTCAGTTTGAGTAGTGCAGAAAGACCTGCTATGGAAGAAGTGGCCAGGAAGTTGAAAATGTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Btz

Protein Analysis

180

Amino Acids

19.78

Weight (kDa)

9.17

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 176	1.5e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 173	4.1e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15280 AT1G15280 AT1G80000 AT1G80000 AT1G80000 AT1G80000
fragaria_vesca	FvH4_6g30960 FvH4_6g30960 FvH4_6g30960
malus_domestica	MD00G1201000.v1.1 MD09G1214900.v1.1 MD17G1197300.v1.1 MD17G1197400.v1.1
prunus_persica	Prupe.3G073300_v2.0.a1 Prupe.3G073300_v2.0.a1
pyrus_communis	pycom09g13170 pycom17g20230
rosa_chinensis	RchiOBHm_Chr2g0137581
rosa_laevigata	RLG00000019663
rosa_multiflora	Rmu_co8200514.1_g000001 Rmu_sc0000765.1_g000014
rosa_roxburghii	Rroxscaffold_2G00107000
rosa_rugosa	Rorug02G0343500
rosa_samantha	Rh2AG391200 Rh2BG398700 Rh2CG378200 Rh2DG413800
rosa_wichuraiana	Rw2G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	325
AcoI	YGGCCR	2 cut(s)	126, 516
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	4 cut(s)	44, 270, 455, 460
AluI	AGCT	4 cut(s)	44, 270, 455, 460
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	126, 238, 516
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	146
BalI	TGGCCA	2 cut(s)	128, 518
BbsI	GAAGAC	2 cut(s)	87, 342
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	520
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	3 cut(s)	165, 206, 215
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	1 cut(s)	45
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	221, 520
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	221, 520
BmsI	GCATC	2 cut(s)	77, 461
BpiI	GAAGAC	2 cut(s)	87, 342
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	79, 369
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	79, 369
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	3 cut(s)	45, 447, 490
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	128, 240, 518
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	146, 441
BsmFI	GGGAC	2 cut(s)	146, 441
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	128, 240, 518
Bsp143I	GATC	1 cut(s)	394
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	2 cut(s)	79, 369
BspANI	GGCC	3 cut(s)	128, 240, 518
BspCNI	CTCAG	3 cut(s)	44, 448, 489
BspMI	ACCTGC	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	79, 369
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	2 cut(s)	79, 369
Bst2UI	CCWGG	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	3 cut(s)	31, 456, 476
BstDSI	CCRYGG	2 cut(s)	79, 369
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 461
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	219, 518
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	87, 342
BsuRI	GGCC	3 cut(s)	128, 240, 518
BtgI	CCRYGG	2 cut(s)	79, 369
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	3 cut(s)	80, 346, 370
DdeI	CTNAG	3 cut(s)	31, 456, 476
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DrdI	GACNNNNNNGTC	1 cut(s)	333
DseDI	GACNNNNNNGTC	1 cut(s)	333
EaeI	YGGCCR	2 cut(s)	126, 516
Eco130I	CCWWGG	2 cut(s)	79, 369
Eco47I	GGWCC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	79, 369
ErhI	CCWWGG	2 cut(s)	79, 369
FaeI	CATG	3 cut(s)	83, 349, 373
FaiI	YATR	7 cut(s)	81, 104, 234, 347, 371, 419, 506
FaqI	GGGAC	2 cut(s)	146, 441
FatI	CATG	3 cut(s)	79, 345, 369
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	165, 206, 215
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	128, 240, 518
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	83, 349, 373
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	3 cut(s)	35, 173, 342
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	111, 265, 326
Hpy188I	TCNGA	4 cut(s)	34, 198, 399, 446
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	111, 265, 326
HpyAV	CCTTC	2 cut(s)	26, 159
HpyCH4V	TGCA	4 cut(s)	61, 68, 464, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 461
HpyF3I	CTNAG	3 cut(s)	31, 456, 476
Hsp92II	CATG	3 cut(s)	83, 349, 373
Ksp22I	TGATCA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	394
LpnPI	CCDG	7 cut(s)	234, 285, 342, 410, 505, 513, 532
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	77, 461
MaeI	CTAG	3 cut(s)	165, 206, 215
MaeIII	GTNAC	3 cut(s)	295, 375, 408
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	87, 342, 521
MfeI	CAATTG	1 cut(s)	242
MlsI	TGGCCA	2 cut(s)	128, 518
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	2 cut(s)	128, 518
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	40, 147, 192, 485
Mox20I	TGGCCA	2 cut(s)	128, 518
MscI	TGGCCA	2 cut(s)	128, 518
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	2 cut(s)	128, 518
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	221, 520
MunI	CAATTG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	50, 461
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	2 cut(s)	79, 369
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	83, 349, 373
NmuCI	GTSAC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	35, 173, 342
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	221, 520
SetI	ASST	7 cut(s)	46, 151, 158, 272, 457, 462, 502
SfaNI	GCATC	2 cut(s)	77, 461
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	242
SspMI	CTAG	3 cut(s)	165, 206, 215
StyD4I	CCNGG	2 cut(s)	219, 518
StyI	CCWWGG	2 cut(s)	79, 369
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	35, 173, 342
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	186, 221
VpaK11BI	GGWCC	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	3 cut(s)	165, 206, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.