AT1G16180

Serine incorporator (Serinc)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005052
Physical Location & Seq
Forward (+)
5540050 .. 5542902
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16180.1

Sequence Viewer

Length: 1239 bp
ATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCCGTACTGTGGTTTCTGGGATCAGCAGACGTTCTGCTAGAATTGCTTACTGTGGTCTCTTTGCACTTTCCTTAATCGTTTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTCCCTTGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTGTTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATCGGTTATGATGATCGGTGTGAAAAATCAGAAAGACCCTCGTGATGGTATACACCATGGTGGTTGGATGATGAAAATAATCTGTTGGTGCATTTTAGTCATCTTTATGTTCTTCCTTCCAAATGAAATCATCAGTTTCTATGAGTCGATGTCAAAGTTTGGTGCTGGATTTTTCCTGCTTGTTCAAGTTGTACTTCTTTTGGATTTTGTTCATGGATGGAATGACACATGGGTTGGCTACGACGAGCAGTTCTGGTATGCTGCTTTGCTCGTTGTTTCTCTTGTATGTTACTTGGCAACATTCGTCTTCTCTGGGTTTCTCTTCCACTGGTTTACTCCATCTGGACATGATTGTGGACTCAACACCTTCTTCATTATCATGACTTTGATATTTGTATTCGTCTTTGCCATTGTAGTTTTGCATCCTACTGTCGGTGGAAGCATTTTACCAGCATCGGTTATATCTCTGTACTGCATGTACCTCTGTTACAGTGGACTTGCAAGTGAACCCCGGGATTACGAGTGCAATGGTCTCCACAATCACTCTAAAGCTGTTTCAACAGGCACAATGACCATTGGCTTACTCACAACTGTTCTCTCGGTTGTTTATTCTGCTGTTCGTGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTTTCATACTCATACGCATTCTTCCACATCATCTTCTCCCTTGCGAGCATGTACTCTGCAATGCTCCTAACCGGCTGGTCAACTTCAGTTGGTGAAAGTGGTAAGCTGGTGGATGTCGGGTGGCCTTCAGTGTGGGTCCGTGTTGTGACCAGCTGGGCCACTGCTGGTCTCTTCATCTGGTCCCTTGTTGCTCCCATTCTCTTCCCCGACCGTGAGTTCTGA

Protein Analysis

412

Amino Acids

45.95

Weight (kDa)

6.25

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 8 - 410 5.5e-122 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 331
AccII CGCG 1 cut(s) 948
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 1086, 1128
AfaI GTAC 5 cut(s) 61, 474, 752, 761, 1070
AfiI CCNNNNNNNGG 4 cut(s) 64, 326, 713, 974
AgsI TTSAA 2 cut(s) 467, 840
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 6 cut(s) 11, 178, 252, 833, 1123, 1170
AluI AGCT 6 cut(s) 11, 178, 252, 833, 1123, 1170
Alw26I GTCTC 5 cut(s) 23, 116, 221, 818, 1190
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 792
AoxI GGCC 2 cut(s) 1139, 1173
ApeKI GCWGC 4 cut(s) 8, 35, 158, 542
ApoI RAATTY 1 cut(s) 259
AspLEI GCGC 1 cut(s) 950
AspS9I GGNCC 3 cut(s) 1153, 1173, 1197
AsuC2I CCSGG 2 cut(s) 793, 794
AsuHPI GGTGA 1 cut(s) 1121
AvaI CYCGRG 1 cut(s) 792
AvaII GGWCC 2 cut(s) 1153, 1197
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 20, 22, 145, 529
BccI CCATC 3 cut(s) 320, 492, 628
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 793, 794
BcoDI GTCTC 5 cut(s) 23, 116, 221, 818, 1190
BfaI CTAG 1 cut(s) 93
BisI GCNGC 4 cut(s) 9, 36, 159, 543
BlsI GCNGC 4 cut(s) 10, 37, 160, 544
Bme1390I CCNGG 2 cut(s) 793, 794
Bme18I GGWCC 2 cut(s) 1153, 1197
BmeT110I CYCGRG 1 cut(s) 792
BmgT120I GGNCC 3 cut(s) 1153, 1173, 1197
BmiI GGNNCC 2 cut(s) 1154, 1199
BmrFI CCNGG 2 cut(s) 793, 794
BmsI GCATC 5 cut(s) 32, 40, 223, 712, 743
BpiI GAAGAC 1 cut(s) 580
Bpu10I CCTNAGC 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 793, 794
BsaI GGTCTC 3 cut(s) 116, 818, 1190
BsaJI CCNNGG 4 cut(s) 182, 337, 791, 792
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 326, 713, 974
Bse118I RCCGGY 1 cut(s) 1088
Bse1I ACTGG 2 cut(s) 614, 1016
Bse3DI GCAATG 2 cut(s) 814, 1083
BseDI CCNNGG 4 cut(s) 182, 337, 791, 792
BseGI GGATG 4 cut(s) 354, 503, 703, 1135
BseLI CCNNNNNNNGG 4 cut(s) 64, 326, 713, 974
BseMI GCAATG 2 cut(s) 814, 1083
BseNI ACTGG 2 cut(s) 614, 1016
BseRI GAGGAG 2 cut(s) 153, 933
BseXI GCAGC 4 cut(s) 20, 22, 145, 529
BseYI CCCAGC 1 cut(s) 1170
Bsh1236I CGCG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 1228
BshFI GGCC 2 cut(s) 1141, 1175
BsiEI CGRYCG 1 cut(s) 1228
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 2 cut(s) 793, 1089
BslFI GGGAC 1 cut(s) 1183
BslI CCNNNNNNNGG 4 cut(s) 64, 326, 713, 974
BsmAI GTCTC 5 cut(s) 23, 116, 221, 818, 1190
BsmFI GGGAC 1 cut(s) 1183
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 1141, 1175
Bso31I GGTCTC 3 cut(s) 116, 818, 1190
BsoBI CYCGRG 1 cut(s) 792
Bsp143I GATC 3 cut(s) 75, 211, 294
Bsp19I CCATGG 1 cut(s) 337
BspANI GGCC 2 cut(s) 1141, 1175
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 1154, 1199
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 116, 818, 1190
BsrDI GCAATG 2 cut(s) 814, 1083
BsrFI RCCGGY 1 cut(s) 1088
BsrI ACTGG 2 cut(s) 614, 1016
BssAI RCCGGY 1 cut(s) 1088
BssECI CCNNGG 4 cut(s) 182, 337, 791, 792
BssMI GATC 3 cut(s) 75, 211, 294
BssNAI GTATAC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 182, 337
Bst1107I GTATAC 1 cut(s) 332
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 6 cut(s) 64, 107, 712, 773, 874, 1229
Bst6I CTCTTC 6 cut(s) 608, 927, 981, 990, 1193, 1223
BstC8I GCNNGC 3 cut(s) 46, 55, 1063
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 4 cut(s) 354, 503, 703, 1135
BstFNI CGCG 1 cut(s) 948
BstHHI GCGC 1 cut(s) 950
BstKTI GATC 3 cut(s) 78, 214, 297
BstMAI GTCTC 5 cut(s) 23, 116, 221, 818, 1190
BstMBI GATC 3 cut(s) 75, 211, 294
BstMCI CGRYCG 1 cut(s) 1228
BstMWI GCNNNNNNNGC 5 cut(s) 41, 50, 54, 98, 902
BstNSI RCATGY 2 cut(s) 760, 1069
BstSCI CCNGG 2 cut(s) 791, 792
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 20, 22, 145, 529
BstV2I GAAGAC 1 cut(s) 580
BstZ17I GTATAC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 1141, 1175
BtgI CCRYGG 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 4 cut(s) 354, 503, 703, 1135
BtsI GCAGTG 1 cut(s) 1176
BtsIMutI CAGTG 4 cut(s) 607, 778, 1152, 1176
Cac8I GCNNGC 3 cut(s) 46, 55, 1063
CciI TCATGA 1 cut(s) 660
CfoI GCGC 1 cut(s) 950
Cfr10I RCCGGY 1 cut(s) 1088
Cfr13I GGNCC 3 cut(s) 1153, 1173, 1197
Cfr9I CCCGGG 1 cut(s) 792
Csp6I GTAC 5 cut(s) 60, 473, 751, 760, 1069
CviAII CATG 9 cut(s) 138, 169, 338, 494, 510, 629, 661, 757, 1066
CviQI GTAC 5 cut(s) 60, 473, 751, 760, 1069
DdeI CTNAG 1 cut(s) 253
DpnI GATC 3 cut(s) 77, 213, 296
DpnII GATC 3 cut(s) 75, 211, 294
Eam1104I CTCTTC 6 cut(s) 608, 927, 981, 990, 1193, 1223
EarI CTCTTC 6 cut(s) 608, 927, 981, 990, 1193, 1223
Eco130I CCWWGG 2 cut(s) 182, 337
Eco31I GGTCTC 3 cut(s) 116, 818, 1190
Eco47I GGWCC 2 cut(s) 1153, 1197
Eco57I CTGAAG 2 cut(s) 1086, 1128
Eco88I CYCGRG 1 cut(s) 792
EcoT14I CCWWGG 2 cut(s) 182, 337
ErhI CCWWGG 2 cut(s) 182, 337
FaeI CATG 9 cut(s) 141, 172, 341, 497, 513, 632, 664, 760, 1069
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 1183
FatI CATG 9 cut(s) 137, 168, 337, 493, 509, 628, 660, 756, 1065
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 4 cut(s) 9, 36, 159, 543
FokI GGATG 4 cut(s) 361, 510, 690, 1142
Fsp4HI GCNGC 4 cut(s) 9, 36, 159, 543
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 949
GluI GCNGC 4 cut(s) 9, 36, 159, 543
GsaI CCCAGC 1 cut(s) 1174
HaeIII GGCC 2 cut(s) 1141, 1175
HapII CCGG 2 cut(s) 793, 1089
HhaI GCGC 1 cut(s) 950
Hin1II CATG 9 cut(s) 141, 172, 341, 497, 513, 632, 664, 760, 1069
Hin6I GCGC 1 cut(s) 948
HinP1I GCGC 1 cut(s) 948
HincII GTYRAC 1 cut(s) 1098
HindII GTYRAC 1 cut(s) 1098
HinfI GANTC 4 cut(s) 142, 425, 639, 938
HpaII CCGG 2 cut(s) 793, 1089
HphI GGTGA 1 cut(s) 1121
Hpy166II GTNNAC 6 cut(s) 332, 615, 638, 776, 788, 1098
Hpy188I TCNGA 3 cut(s) 312, 969, 1238
Hpy188III TCNNGA 5 cut(s) 215, 323, 624, 661, 935
Hpy8I GTNNAC 6 cut(s) 332, 615, 638, 776, 788, 1098
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 4 cut(s) 407, 658, 985, 1152
HpyCH4III ACNGT 6 cut(s) 64, 107, 712, 773, 874, 1229
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 8 cut(s) 8, 119, 372, 703, 756, 782, 807, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 50, 54, 98, 902
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 9 cut(s) 141, 172, 341, 497, 513, 632, 664, 760, 1069
HspAI GCGC 1 cut(s) 948
Kzo9I GATC 3 cut(s) 75, 211, 294
LmnI GCTCC 4 cut(s) 166, 183, 1086, 1213
Lsp1109I GCAGC 4 cut(s) 20, 22, 145, 529
LweI GCATC 5 cut(s) 32, 40, 223, 712, 743
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 3 cut(s) 569, 767, 1162
MalI GATC 3 cut(s) 77, 213, 296
MboI GATC 3 cut(s) 75, 211, 294
MluCI AATT 2 cut(s) 96, 259
MlyI GAGTC 2 cut(s) 434, 633
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 6 cut(s) 174, 330, 773, 942, 954, 969
MseI TTAA 2 cut(s) 128, 189
MslI CAYNNNNRTG 4 cut(s) 339, 386, 633, 659
MspA1I CMGCKG 1 cut(s) 1170
MspI CCGG 2 cut(s) 793, 1089
MspR9I CCNGG 2 cut(s) 793, 794
Mva1269I GAATGC 1 cut(s) 1034
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 5 cut(s) 41, 50, 54, 98, 902
NciI CCSGG 2 cut(s) 793, 794
NcoI CCATGG 1 cut(s) 337
NdeII GATC 3 cut(s) 75, 211, 294
NlaIII CATG 9 cut(s) 141, 172, 341, 497, 513, 632, 664, 760, 1069
NlaIV GGNNCC 2 cut(s) 1154, 1199
NmuCI GTSAC 1 cut(s) 1162
NspI RCATGY 2 cut(s) 760, 1069
OliI CACNNNNGTG 1 cut(s) 339
PagI TCATGA 1 cut(s) 660
PctI GAATGC 1 cut(s) 1034
PfeI GAWTC 2 cut(s) 142, 938
PkrI GCNGC 4 cut(s) 10, 37, 160, 544
PleI GAGTC 2 cut(s) 433, 633
PpsI GAGTC 2 cut(s) 433, 633
PspFI CCCAGC 1 cut(s) 1170
PspN4I GGNNCC 2 cut(s) 1154, 1199
PspPI GGNCC 3 cut(s) 1153, 1173, 1197
PvuII CAGCTG 1 cut(s) 1170
RsaI GTAC 5 cut(s) 61, 474, 752, 761, 1070
RsaNI GTAC 5 cut(s) 60, 473, 751, 760, 1069
RseI CAYNNNNRTG 4 cut(s) 339, 386, 633, 659
SaqAI TTAA 2 cut(s) 128, 189
SatI GCNGC 4 cut(s) 9, 36, 159, 543
Sau3AI GATC 3 cut(s) 75, 211, 294
Sau96I GGNCC 3 cut(s) 1153, 1173, 1197
SchI GAGTC 2 cut(s) 434, 633
ScrFI CCNGG 2 cut(s) 793, 794
SfaNI GCATC 5 cut(s) 32, 40, 223, 712, 743
SinI GGWCC 2 cut(s) 1153, 1197
SmaI CCCGGG 1 cut(s) 794
SmiMI CAYNNNNRTG 4 cut(s) 339, 386, 633, 659
Sse9I AATT 2 cut(s) 96, 259
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 791, 792
StyI CCWWGG 2 cut(s) 182, 337
TaaI ACNGT 6 cut(s) 64, 107, 712, 773, 874, 1229
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 428
TasI AATT 2 cut(s) 96, 259
TatI WGTACW 3 cut(s) 472, 750, 1068
TfiI GAWTC 2 cut(s) 142, 938
Tru1I TTAA 2 cut(s) 128, 189
Tru9I TTAA 2 cut(s) 128, 189
TscAI CASTG 4 cut(s) 614, 778, 1152, 1183
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 4 cut(s) 8, 35, 158, 542
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 7 cut(s) 126, 368, 420, 482, 643, 1011, 1180
TspGWI ACGGA 2 cut(s) 137, 1145
TspMI CCCGGG 1 cut(s) 792
TspRI CASTG 4 cut(s) 614, 778, 1152, 1183
VpaK11BI GGWCC 2 cut(s) 1153, 1197
XapI RAATTY 1 cut(s) 259
XceI RCATGY 2 cut(s) 760, 1069
XmaI CCCGGG 1 cut(s) 792
XmiI GTMKAC 1 cut(s) 331
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.