Rh2BG360100

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005052
Physical Location & Seq
Reverse (-)
49862633 .. 49866655
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG360100.1

Sequence Viewer

Length: 1245 bp
ATGTGGGCAGCTTCGTGCCTTGCGTCGTGTTGTGCCGGCTGTGCCTGCAATTTGTGCCAGTCGGCGGTTTCTAGTATTAGCCGCCGCTCTGCGAGGATTGCATACTGTTTCCTCTTTGCGTTTTCTCTCATTGCTTCATGGATTCTCCGCGACGTCGCGCCGCCTCTACTGGAAAAGATACCTTGGATTAATCATTTTCATCAGATACCTGACAGGGAGTGGTTTGAAACCGAGGCTGTGCTTCGTGTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATCGGTGTGAAGAGTCAAAAGGATCCCCGTGATAGTATCCACCATGGTGGATGGATGATGAAAGTTACTTGCTGGTTTCTTTTGGTGATCTTCTCATTGTTTTTCATACCAAATGGGATTATTAGTTTCTATGAGACAATTGCAAAGTTTGGCTCAGGATTCTTTCTTCTCGTACAAGTTGTGCTTCTGTTGGATTTTGTCCATGGATGGAATGACAAATGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCTCTTTTTGTTGTTTCTCTAGTTTGTTATCTGGCGACGTTCGTTTTCTCTGGACTTCTTTTCCATTTGTTCACGCCATCTGGACATGACTGCGGGCTGAACACCTTCTTTATTGTCATGACTCTGATATTCGTCTTCGTGTTTCTTATAGTGGCACTGCATCCTACTGTAAGTGGCAGCATTTTACCCGCGTCAGTTATATCTGTGTACTGTACATACCTCTGCTACAGTGCACTTGCTAGTGAGCCGAGGGACTATGAGTGCAATGGTCTTCACAAGCATTCTAAAGCTGTTTCCACTGGGACTCTTACCTTAGGTCTGCTTACCACTGTTCTATCTGTGGTTTATTCTGCTGTGCGTGCTGGATCTTCCACTACTCTTCTGTCCCCGCCTAGTTCACCTCGTGCAGGTGCTGGAAAACCACTGCTCCCATTGGATAAGCCAGAAGAACATGAAGAAAATGAGAAATCCAAGTCTGTGTCGTATTCATATGCCTTCTTCCACATCATCTTCTCACTTGCAAGTATGTACTCGGCAATGCTTCTGACAGGGTGGTCAACCTCAGTTGGGGAGAGTGGGAAGTTGATTGACGTGGGGTGGCCGTCCGTCTGGGTGAGGGTCATGACTAGTTGGGCAACTGCAGGTCTCTACATCTGGTCCCTTTTGGCTCCTATTCTGTTCCCTGAGAGGGAATTTTAA

Protein Analysis

414

Amino Acids

46.12

Weight (kDa)

6.62

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 8 - 412 1.6e-120 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 944
AasI GACNNNNNNGTC 1 cut(s) 1099
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 2 cut(s) 944, 1178
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 3 cut(s) 150, 158, 737
AciI CCGC 8 cut(s) 65, 82, 85, 148, 161, 639, 735, 935
AclWI GGATC 3 cut(s) 311, 324, 919
AcoI YGGCCR 1 cut(s) 1145
AcsI RAATTY 1 cut(s) 1238
AcyI GRCGYC 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 4 cut(s) 468, 755, 760, 1076
AfiI CCNNNNNNNGG 4 cut(s) 64, 953, 1113, 1234
AgsI TTSAA 1 cut(s) 227
AhlI ACTAGT 1 cut(s) 1172
AjiI CACGTC 1 cut(s) 1138
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 3 cut(s) 11, 252, 836
AluI AGCT 3 cut(s) 11, 252, 836
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 422, 1196
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 3 cut(s) 311, 324, 919
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 1 cut(s) 1145
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 2 cut(s) 8, 723
ApoI RAATTY 1 cut(s) 1238
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 1203
AsuHPI GGTGA 4 cut(s) 265, 391, 936, 1171
AvaII GGWCC 1 cut(s) 1203
AxyI CCTNAGG 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 781
BamHI GGATCC 1 cut(s) 316
BauI CACGAG 1 cut(s) 948
BbsI GAAGAC 2 cut(s) 673, 809
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 2 cut(s) 20, 735
BccI CCATC 4 cut(s) 284, 339, 495, 631
BceAI ACGGC 1 cut(s) 1132
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 422, 1196
BcuI ACTAGT 1 cut(s) 1172
BfaI CTAG 5 cut(s) 72, 566, 786, 939, 1173
BfmI CTRYAG 2 cut(s) 772, 1185
BfuAI ACCTGC 2 cut(s) 944, 1178
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 5 cut(s) 9, 82, 85, 161, 724
BlsI GCNGC 5 cut(s) 10, 83, 86, 162, 725
Bme18I GGWCC 1 cut(s) 1203
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 1 cut(s) 1203
BmiI GGNNCC 3 cut(s) 318, 1205, 1215
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 1 cut(s) 715
BmuI ACTGGG 1 cut(s) 855
BpiI GAAGAC 2 cut(s) 673, 809
Bpu10I CCTNAGC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 1196
BsaJI CCNNGG 5 cut(s) 182, 231, 337, 496, 794
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 953, 1113, 1234
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 58, 174, 850
Bse21I CCTNAGG 1 cut(s) 859
Bse3DI GCAATG 3 cut(s) 129, 817, 1089
BseDI CCNNGG 5 cut(s) 182, 231, 337, 496, 794
BseGI GGATG 5 cut(s) 276, 350, 354, 506, 706
BseLI CCNNNNNNNGG 4 cut(s) 64, 953, 1113, 1234
BseMI GCAATG 3 cut(s) 129, 817, 1089
BseMII CTCAG 3 cut(s) 462, 1122, 1221
BseNI ACTGG 3 cut(s) 58, 174, 850
BseSI GKGCMC 1 cut(s) 781
BseXI GCAGC 2 cut(s) 20, 735
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 3 cut(s) 150, 158, 737
BshFI GGCC 1 cut(s) 1147
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 4 cut(s) 812, 862, 916, 1189
BslI CCNNNNNNNGG 4 cut(s) 64, 953, 1113, 1234
BsmAI GTCTC 2 cut(s) 422, 1196
BsmFI GGGAC 4 cut(s) 812, 862, 916, 1189
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 1 cut(s) 1147
Bso31I GGTCTC 1 cut(s) 1196
Bsp1286I GDGCHC 1 cut(s) 781
Bsp1407I TGTACA 1 cut(s) 758
Bsp143I GATC 4 cut(s) 294, 316, 381, 911
Bsp19I CCATGG 2 cut(s) 337, 496
BspACI CCGC 8 cut(s) 65, 82, 85, 148, 161, 639, 735, 935
BspANI GGCC 1 cut(s) 1147
BspCNI CTCAG 3 cut(s) 461, 1121, 1222
BspFNI CGCG 3 cut(s) 150, 158, 737
BspHI TCATGA 2 cut(s) 663, 1167
BspLI GGNNCC 3 cut(s) 318, 1205, 1215
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 2 cut(s) 944, 1178
BspPI GGATC 3 cut(s) 311, 324, 919
BspTNI GGTCTC 1 cut(s) 1196
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 3 cut(s) 129, 817, 1089
BsrFI RCCGGY 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 758
BsrI ACTGG 3 cut(s) 58, 174, 850
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 5 cut(s) 182, 231, 337, 496, 794
BssMI GATC 4 cut(s) 294, 316, 381, 911
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 948
BssT1I CCWWGG 3 cut(s) 182, 337, 496
Bst2BI CACGAG 1 cut(s) 948
Bst4CI ACNGT 5 cut(s) 107, 715, 758, 776, 877
Bst6I CTCTTC 2 cut(s) 299, 930
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 758
BstC8I GCNNGC 4 cut(s) 37, 46, 641, 906
BstDEI CTNAG 4 cut(s) 448, 859, 1108, 1230
BstDSI CCRYGG 2 cut(s) 337, 496
BstENI CCTNNNNNAGG 1 cut(s) 951
BstF5I GGATG 5 cut(s) 276, 350, 354, 506, 706
BstFNI CGCG 3 cut(s) 150, 158, 737
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 297, 319, 384, 914
BstMAI GTCTC 2 cut(s) 422, 1196
BstMBI GATC 4 cut(s) 294, 316, 381, 911
BstMWI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 905
BstSFI CTRYAG 2 cut(s) 772, 1185
BstSLI GKGCMC 1 cut(s) 781
BstUI CGCG 3 cut(s) 150, 158, 737
BstV1I GCAGC 2 cut(s) 20, 735
BstV2I GAAGAC 2 cut(s) 673, 809
BstX2I RGATCY 2 cut(s) 316, 911
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 2 cut(s) 316, 911
Bsu36I CCTNAGG 1 cut(s) 859
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 1147
BtgI CCRYGG 2 cut(s) 337, 496
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 5 cut(s) 276, 350, 354, 506, 706
BtsI GCAGTG 2 cut(s) 701, 968
BtsIMutI CAGTG 5 cut(s) 701, 781, 843, 873, 968
BveI ACCTGC 2 cut(s) 944, 1178
Cac8I GCNNGC 4 cut(s) 37, 46, 641, 906
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 2 cut(s) 663, 1167
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 1203
CseI GACGC 2 cut(s) 12, 726
Csp6I GTAC 4 cut(s) 467, 754, 759, 1075
CviAII CATG 7 cut(s) 138, 338, 497, 632, 664, 998, 1168
CviQI GTAC 4 cut(s) 467, 754, 759, 1075
DdeI CTNAG 4 cut(s) 448, 859, 1108, 1230
DpnI GATC 4 cut(s) 296, 318, 383, 913
DpnII GATC 4 cut(s) 294, 316, 381, 911
DraIII CACNNNGTG 1 cut(s) 950
DrdI GACNNNNNNGTC 1 cut(s) 1099
DseDI GACNNNNNNGTC 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 1145
Eam1104I CTCTTC 2 cut(s) 299, 930
EarI CTCTTC 2 cut(s) 299, 930
Eco130I CCWWGG 3 cut(s) 182, 337, 496
Eco31I GGTCTC 1 cut(s) 1196
Eco47I GGWCC 1 cut(s) 1203
Eco81I CCTNAGG 1 cut(s) 859
EcoNI CCTNNNNNAGG 1 cut(s) 951
EcoT14I CCWWGG 3 cut(s) 182, 337, 496
ErhI CCWWGG 3 cut(s) 182, 337, 496
FaeI CATG 7 cut(s) 141, 341, 500, 635, 667, 1001, 1171
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 4 cut(s) 812, 862, 916, 1189
FatI CATG 7 cut(s) 137, 337, 496, 631, 663, 997, 1167
FauI CCCGC 3 cut(s) 632, 742, 942
FauNDI CATATG 1 cut(s) 1036
Fnu4HI GCNGC 5 cut(s) 9, 82, 85, 161, 724
FokI GGATG 5 cut(s) 263, 357, 361, 513, 693
Fsp4HI GCNGC 5 cut(s) 9, 82, 85, 161, 724
FspBI CTAG 5 cut(s) 72, 566, 786, 939, 1173
GlaI GCGC 1 cut(s) 159
GluI GCNGC 5 cut(s) 9, 82, 85, 161, 724
HaeIII GGCC 1 cut(s) 1147
HapII CCGG 1 cut(s) 36
HgaI GACGC 2 cut(s) 12, 726
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 7 cut(s) 141, 341, 500, 635, 667, 1001, 1171
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 1104
HindII GTYRAC 1 cut(s) 1104
HinfI GANTC 5 cut(s) 142, 307, 453, 667, 850
HpaII CCGG 1 cut(s) 36
HphI GGTGA 4 cut(s) 265, 391, 936, 1171
Hpy166II GTNNAC 5 cut(s) 618, 754, 779, 944, 1104
Hpy188I TCNGA 3 cut(s) 204, 672, 1092
Hpy188III TCNNGA 5 cut(s) 450, 597, 627, 664, 1168
Hpy8I GTNNAC 5 cut(s) 618, 754, 779, 944, 1104
Hpy99I CGWCG 4 cut(s) 28, 155, 158, 586
HpyAV CCTTC 2 cut(s) 661, 1051
HpyCH4III ACNGT 5 cut(s) 107, 715, 758, 776, 877
HpyCH4IV ACGT 3 cut(s) 153, 584, 1137
HpyCH4V TGCA 9 cut(s) 48, 101, 437, 706, 779, 810, 953, 1067, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 905
HpyF3I CTNAG 4 cut(s) 448, 859, 1108, 1230
HpySE526I ACGT 3 cut(s) 153, 584, 1137
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 7 cut(s) 141, 341, 500, 635, 667, 1001, 1171
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 294, 316, 381, 911
LmnI GCTCC 2 cut(s) 978, 1219
Lsp1109I GCAGC 2 cut(s) 20, 735
LweI GCATC 1 cut(s) 715
MaeI CTAG 5 cut(s) 72, 566, 786, 939, 1173
MaeII ACGT 3 cut(s) 153, 584, 1137
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 296, 318, 383, 913
MbiI CCGCTC 1 cut(s) 87
MboI GATC 4 cut(s) 294, 316, 381, 911
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 2 cut(s) 316, 911
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 3 cut(s) 49, 432, 1238
MlyI GAGTC 3 cut(s) 316, 661, 844
MmeI TCCRAC 2 cut(s) 465, 499
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 2 cut(s) 189, 1243
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 3 cut(s) 150, 158, 737
MwoI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 905
NaeI GCCGGC 1 cut(s) 37
NcoI CCATGG 2 cut(s) 337, 496
NdeI CATATG 1 cut(s) 1036
NdeII GATC 4 cut(s) 294, 316, 381, 911
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 7 cut(s) 141, 341, 500, 635, 667, 1001, 1171
NlaIV GGNNCC 3 cut(s) 318, 1205, 1215
NmeAIII GCCGAG 2 cut(s) 819, 1058
OliI CACNNNNGTG 1 cut(s) 339
PagI TCATGA 2 cut(s) 663, 1167
PaqCI CACCTGC 1 cut(s) 944
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 142, 453
PkrI GCNGC 5 cut(s) 10, 83, 86, 162, 725
PleI GAGTC 3 cut(s) 315, 661, 844
PpsI GAGTC 3 cut(s) 315, 661, 844
PshBI ATTAAT 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 318, 1205, 1215
PspPI GGNCC 1 cut(s) 1203
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 316, 911
RsaI GTAC 4 cut(s) 468, 755, 760, 1076
RsaNI GTAC 4 cut(s) 467, 754, 759, 1075
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 2 cut(s) 189, 1243
SatI GCNGC 5 cut(s) 9, 82, 85, 161, 724
Sau3AI GATC 4 cut(s) 294, 316, 381, 911
Sau96I GGNCC 1 cut(s) 1203
SchI GAGTC 3 cut(s) 316, 661, 844
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 2 cut(s) 772, 1185
SinI GGWCC 1 cut(s) 1203
SmiMI CAYNNNNRTG 1 cut(s) 339
SpeI ACTAGT 1 cut(s) 1172
Sse9I AATT 3 cut(s) 49, 432, 1238
SsiI CCGC 8 cut(s) 65, 82, 85, 148, 161, 639, 735, 935
SspMI CTAG 5 cut(s) 72, 566, 786, 939, 1173
StyI CCWWGG 3 cut(s) 182, 337, 496
TaaI ACNGT 5 cut(s) 107, 715, 758, 776, 877
TaiI ACGT 3 cut(s) 156, 587, 1140
TasI AATT 3 cut(s) 49, 432, 1238
TatI WGTACW 3 cut(s) 753, 758, 1074
TauI GCSGC 3 cut(s) 84, 87, 163
TfiI GAWTC 2 cut(s) 142, 453
Tru1I TTAA 2 cut(s) 189, 1243
Tru9I TTAA 2 cut(s) 189, 1243
TscAI CASTG 5 cut(s) 708, 781, 850, 880, 975
TseI GCWGC 2 cut(s) 8, 723
TspDTI ATGAA 6 cut(s) 126, 188, 368, 388, 1014, 1023
TspGWI ACGGA 1 cut(s) 1141
TspRI CASTG 5 cut(s) 708, 781, 850, 880, 975
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 1203
VspI ATTAAT 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 951
XapI RAATTY 1 cut(s) 1238
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 5 cut(s) 72, 566, 786, 939, 1173
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.