Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005052

Physical Location & Seq

Genomic Coordinates Reverse (-)

33617014 .. 33618122

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0301200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACGGAAGCTGGAGCGGGTTTTGACCGGGTCCGGGCCGGGTTCAGGGGGCTAATAGAGCTGGCGAAGAAGCTGGAAGGTGAAGAGTTGAAGCTGCGGCGTGATTCGGAAGCGAAAGCGATGGAGATTGAAAAAGTTGAAAAATCGATACAGGAAGGGAGACAGCAGTTGGATGCACTGCAAAAGTCGGTGCGTGAGGGCGAAAAGAATTTGGATTCAGTTCAAATGGCAGCAGAGGAGCATGAGAAGCTTTTGGACTCGATAGGCCAGGGACTTGAAAGGAAAGAGAGGGAACTCGAACAGCGGGCCAATGAGCTTGAGTTTAAAAAGAGACAATTTGAATTGAGAGTTGAGGAAGTTAATTCAAAGGATAAGAGGGTCAATGAACGCCTCAATGAGGTTGAATTGAATGAAATTTTTTTGGAATCATTTGGAGAATCAATACAAAAAGACAGAGAGCATTTGGATTTGGTCCAAAAGTTGGCAGCCGAGCGTGAAAAGCAGTTGGATTCACTCCAAACATCGGTGCAAGATCGTGAAAACAATTTGTTTTCACTTCAAAAATCAGTACAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGATCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

219

Amino Acids

25.58

Weight (kDa)

5.23

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16180 AT1G16180
fragaria_vesca	FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080 FvH4_6g28080
malus_domestica	MD09G1229700.v1.1 MD17G1228400.v1.1
prunus_persica	Prupe.3G105800_v2.0.a1 Prupe.3G105800_v2.0.a1 Prupe.3G105800_v2.0.a1
pyrus_communis	pycom09g14820 pycom17g23100
rosa_chinensis	RchiOBHm_Chr2g0131941
rosa_laevigata	RLG00000019219
rosa_multiflora	Rmu_sc0000584.1_g000008 Rmu_sc0003731.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112470
rosa_rugosa	Rorug02G0300800 Rorug02G0300900 Rorug02G0301000 Rorug02G0301100 Rorug02G0301200 Rorug02G0301300
rosa_samantha	Rh2BG360100 Rh2CG338000
rosa_wichuraiana	Rw2G028690 Rw2G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	17
AciI	CCGC	3 cut(s)	17, 97, 304
AcsI	RAATTY	2 cut(s)	208, 414
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	5 cut(s)	34, 45, 397, 481, 523
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	7 cut(s)	11, 61, 73, 94, 250, 316, 656
AluI	AGCT	7 cut(s)	11, 61, 73, 94, 250, 316, 656
Alw26I	GTCTC	2 cut(s)	154, 325
AoxI	GGCC	4 cut(s)	36, 265, 306, 642
ApeKI	GCWGC	3 cut(s)	94, 230, 485
ApoI	RAATTY	2 cut(s)	208, 414
AspS9I	GGNCC	4 cut(s)	31, 36, 306, 472
AsuC2I	CCSGG	3 cut(s)	29, 35, 40
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	31, 472
BbvI	GCAGC	3 cut(s)	81, 242, 497
BccI	CCATC	2 cut(s)	115, 599
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	3 cut(s)	29, 35, 40
BcoDI	GTCTC	2 cut(s)	154, 325
BisI	GCNGC	4 cut(s)	95, 98, 231, 486
BlsI	GCNGC	4 cut(s)	96, 99, 232, 487
Bme1390I	CCNGG	4 cut(s)	29, 35, 40, 269
Bme18I	GGWCC	2 cut(s)	31, 472
BmgT120I	GGNCC	4 cut(s)	31, 36, 306, 472
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	4 cut(s)	29, 35, 40, 269
BmsI	GCATC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	29, 35, 40
Bsa29I	ATCGAT	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 45, 397, 481, 523
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	5 cut(s)	34, 45, 397, 481, 523
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	81, 242, 497
BshFI	GGCC	4 cut(s)	38, 267, 308, 644
BshVI	ATCGAT	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	28, 34, 39
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	5 cut(s)	34, 45, 397, 481, 523
BsmAI	GTCTC	2 cut(s)	154, 325
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	38, 267, 308, 644
Bsp143I	GATC	2 cut(s)	532, 649
BspACI	CCGC	3 cut(s)	17, 97, 304
BspANI	GGCC	4 cut(s)	38, 267, 308, 644
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	532, 649
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	63, 306, 642
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	535, 652
BstMAI	GTCTC	2 cut(s)	154, 325
BstMBI	GATC	2 cut(s)	532, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 247, 499
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	4 cut(s)	27, 33, 38, 267
BstV1I	GCAGC	3 cut(s)	81, 242, 497
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	38, 267, 308, 644
BsuTUI	ATCGAT	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	63, 306, 642
Cfr13I	GGNCC	4 cut(s)	31, 36, 306, 472
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	1 cut(s)	569
DpnI	GATC	2 cut(s)	534, 651
DpnII	GATC	2 cut(s)	532, 649
DraI	TTTAAA	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	31, 472
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	245
FaiI	YATR	1 cut(s)	243
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	241
FauI	CCCGC	2 cut(s)	10, 297
Fnu4HI	GCNGC	4 cut(s)	95, 98, 231, 486
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	95, 98, 231, 486
GluI	GCNGC	4 cut(s)	95, 98, 231, 486
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	38, 267, 308, 644
HapII	CCGG	3 cut(s)	28, 34, 39
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	7 cut(s)	104, 215, 257, 425, 437, 509, 593
HpaII	CCGG	3 cut(s)	28, 34, 39
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	109, 604
Hpy188III	TCNNGA	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	71, 149
HpyCH4V	TGCA	3 cut(s)	176, 181, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 247, 499
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	532, 649
LmnI	GCTCC	2 cut(s)	14, 238
Lsp1109I	GCAGC	3 cut(s)	81, 242, 497
LweI	GCATC	1 cut(s)	163
MalI	GATC	2 cut(s)	534, 651
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	2 cut(s)	532, 649
MboII	GAAGA	2 cut(s)	79, 95
MluCI	AATT	7 cut(s)	208, 335, 341, 361, 404, 414, 544
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	150, 486, 570
MnlI	CCTC	7 cut(s)	190, 229, 282, 346, 369, 391, 401
MseI	TTAA	2 cut(s)	324, 360
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	3 cut(s)	28, 34, 39
MspR9I	CCNGG	4 cut(s)	29, 35, 40, 269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	58, 247, 499
NciI	CCSGG	3 cut(s)	29, 35, 40
NdeII	GATC	2 cut(s)	532, 649
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	514
PfeI	GAWTC	6 cut(s)	104, 215, 425, 437, 509, 593
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	96, 99, 232, 487
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	4 cut(s)	31, 36, 306, 472
PsyI	GACNNNGTC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	324, 360
SatI	GCNGC	4 cut(s)	95, 98, 231, 486
Sau3AI	GATC	2 cut(s)	532, 649
Sau96I	GGNCC	4 cut(s)	31, 36, 306, 472
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	4 cut(s)	29, 35, 40, 269
SetI	ASST	9 cut(s)	13, 63, 75, 82, 96, 252, 318, 402, 658
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	31, 472
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	7 cut(s)	208, 335, 341, 361, 404, 414, 544
SsiI	CCGC	3 cut(s)	17, 97, 304
StyD4I	CCNGG	4 cut(s)	27, 33, 38, 267
TaqI	TCGA	4 cut(s)	146, 260, 297, 652
TasI	AATT	7 cut(s)	208, 335, 341, 361, 404, 414, 544
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	6 cut(s)	104, 215, 425, 437, 509, 593
Tru1I	TTAA	2 cut(s)	324, 360
Tru9I	TTAA	2 cut(s)	324, 360
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	3 cut(s)	94, 230, 485
TspDTI	ATGAA	2 cut(s)	399, 426
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	183
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	31, 472
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	208, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.