Rw2G028690

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005052
Physical Location & Seq
Reverse (-)
46053061 .. 46057390
4330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028690.1

Sequence Viewer

Length: 933 bp
ATGTGGGCAGCTTCGTGCCTTGCGTCGTGTTGTGCCGGCTGTGCTTGCAATTTGTGCCAGTCGGCGGTTTCTAGTATCAGCCGCCGCTCTGCGAGGATTGCATACTGTTTCCTCTTTGCGTTTTCTCTCATTGCTTCATGGATTCTCCGCGACGTCCCGCCGCCTCTACTGGAAAAGATACCTTGGATTAATCATTTTCATCAGATACCGGACAGGGAGTGGTTTGAAACCGAGGCTGTGCTTCGTGTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATTGGTGTGAAGAGTCAAAAGGATCCCCGTGATAGTATCCACCATGGTGGATGGATGATGAAAGTAACTTGCTGGTTCCTTTTGGTGATCTTCTCAATGTTTTTCATACCAAACGGGATTATTAGTTTCTATGAGACAATTGCAAAGTTTAGCTCAGGATTCTTTCTTCTCGTACAAGTTGTGCTTCTGTTGGATTTTGTTCATGGATGGAATGACAAATGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCTCTTTTTGTTGTTTCTCTAGTTTGTTATCTGGCGACATTCGTCTTCTCTGGGCTTCTTTTCCATTTGTTCATGCCATCTGGACATGACTGTGGGCTGAACACCTTCTTTATTGTCATGACTCTGATATTCGTCTTCGTGTTTCTTATAGTGGCACTGCATCCTACTGAGCATCTGTCTTGTGAGCACTTTGGCGCCTTTTTGGCAAATGTTAAAGAACTAAACGCCCGTGAGCAAAGAAAAGAGGTACATGCTCATTTTGTGAGAATTTTGGCTATAACTTGTTTGCATTTTGTTATGGAGTGTTTGGTTGCTGAGAAGATTTACGACTTTGAAAAGAAAGGGCCTTTCTCTGTAAATGGGTGTTTTGCTTTGTTGAGAAGTTAA

Protein Analysis

310

Amino Acids

35.5

Weight (kDa)

6.87

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 8 - 238 1.2e-62 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 740
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 1 cut(s) 150
AciI CCGC 6 cut(s) 65, 82, 85, 148, 158, 161
AclWI GGATC 2 cut(s) 311, 324
AcsI RAATTY 1 cut(s) 813
AcyI GRCGYC 2 cut(s) 153, 741
AfaI GTAC 2 cut(s) 468, 795
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 227, 881
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 3 cut(s) 11, 252, 447
AluI AGCT 3 cut(s) 11, 252, 447
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 311, 324
AoxI GGCC 1 cut(s) 890
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 813
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 265, 391
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 583, 673
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 1 cut(s) 20
BccI CCATC 4 cut(s) 284, 339, 495, 631
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 72, 566
BfoI RGCGCY 1 cut(s) 744
BfuI GTATCC 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 749
BisI GCNGC 4 cut(s) 9, 82, 85, 161
BlsI GCNGC 4 cut(s) 10, 83, 86, 162
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 3 cut(s) 318, 371, 742
BmsI GCATC 2 cut(s) 715, 727
BoxI GACNNNNGTC 1 cut(s) 587
BpiI GAAGAC 2 cut(s) 583, 673
Bpu10I CCTNAGC 1 cut(s) 448
BsaHI GRCGYC 2 cut(s) 153, 741
BsaJI CCNNGG 3 cut(s) 182, 231, 337
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 58, 174
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 182, 231, 337
BseGI GGATG 5 cut(s) 276, 350, 354, 506, 706
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 462, 705, 852
BseNI ACTGG 2 cut(s) 58, 174
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 892
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 2 cut(s) 36, 209
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 2 cut(s) 316, 381
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 6 cut(s) 65, 82, 85, 148, 158, 161
BspANI GGCC 1 cut(s) 892
BspCNI CTCAG 3 cut(s) 461, 706, 853
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 318, 371, 742
BspPI GGATC 2 cut(s) 311, 324
BspT107I GGYRCC 1 cut(s) 740
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 58, 174
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 182, 231, 337
BssMI GATC 2 cut(s) 316, 381
BssNI GRCGYC 2 cut(s) 153, 741
BssT1I CCWWGG 2 cut(s) 182, 337
Bst4CI ACNGT 2 cut(s) 107, 638
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 2 cut(s) 153, 741
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 37, 46
BstDEI CTNAG 3 cut(s) 448, 714, 861
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 5 cut(s) 276, 350, 354, 506, 706
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 2 cut(s) 319, 384
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 316, 381
BstMWI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 749
BstNSI RCATGY 1 cut(s) 800
BstPAI GACNNNNGTC 1 cut(s) 587
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 583, 673
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 892
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 5 cut(s) 276, 350, 354, 506, 706
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 1 cut(s) 701
Cac8I GCNNGC 2 cut(s) 37, 46
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 743
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 890
CseI GACGC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 467, 794
CviAII CATG 7 cut(s) 138, 338, 497, 619, 632, 664, 797
CviQI GTAC 2 cut(s) 467, 794
DdeI CTNAG 3 cut(s) 448, 714, 861
DinI GGCGCC 1 cut(s) 742
DpnI GATC 2 cut(s) 318, 383
DpnII GATC 2 cut(s) 316, 381
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 182, 337
EcoO109I RGGNCCY 1 cut(s) 890
EcoT14I CCWWGG 2 cut(s) 182, 337
EgeI GGCGCC 1 cut(s) 742
EheI GGCGCC 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 182, 337
FaeI CATG 7 cut(s) 141, 341, 500, 622, 635, 667, 800
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 140
FatI CATG 7 cut(s) 137, 337, 496, 618, 631, 663, 796
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 9, 82, 85, 161
FokI GGATG 5 cut(s) 263, 357, 361, 513, 693
Fsp4HI GCNGC 4 cut(s) 9, 82, 85, 161
FspBI CTAG 2 cut(s) 72, 566
GlaI GCGC 1 cut(s) 742
GluI GCNGC 4 cut(s) 9, 82, 85, 161
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 1 cut(s) 892
HapII CCGG 2 cut(s) 36, 209
HgaI GACGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 743
Hin1I GRCGYC 2 cut(s) 153, 741
Hin1II CATG 7 cut(s) 141, 341, 500, 622, 635, 667, 800
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HinfI GANTC 4 cut(s) 142, 307, 453, 667
HpaII CCGG 2 cut(s) 36, 209
HphI GGTGA 2 cut(s) 265, 391
Hpy188I TCNGA 2 cut(s) 204, 672
Hpy188III TCNNGA 3 cut(s) 450, 627, 664
Hpy99I CGWCG 2 cut(s) 28, 155
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 107, 638
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 48, 101, 437, 706, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 749
HpyF3I CTNAG 3 cut(s) 448, 714, 861
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 2 cut(s) 153, 741
Hsp92II CATG 7 cut(s) 141, 341, 500, 622, 635, 667, 800
HspAI GCGC 1 cut(s) 741
KasI GGCGCC 1 cut(s) 740
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 316, 381
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 715, 727
MaeI CTAG 2 cut(s) 72, 566
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 318, 383
MbiI CCGCTC 1 cut(s) 87
MboI GATC 2 cut(s) 316, 381
MboII GAAGA 7 cut(s) 262, 316, 376, 452, 583, 673, 877
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 3 cut(s) 49, 432, 813
Mly113I GGCGCC 1 cut(s) 741
MlyI GAGTC 2 cut(s) 316, 661
MmeI TCCRAC 2 cut(s) 465, 499
MnlI CCTC 5 cut(s) 87, 122, 174, 226, 784
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 3 cut(s) 189, 759, 931
MslI CAYNNNNRTG 2 cut(s) 339, 636
MspI CCGG 2 cut(s) 36, 209
MunI CAATTG 1 cut(s) 432
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 5 cut(s) 41, 45, 54, 98, 749
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 741
NcoI CCATGG 1 cut(s) 337
NdeII GATC 2 cut(s) 316, 381
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 7 cut(s) 141, 341, 500, 622, 635, 667, 800
NlaIV GGNNCC 3 cut(s) 318, 371, 742
NspI RCATGY 1 cut(s) 800
OliI CACNNNNGTG 1 cut(s) 339
PagI TCATGA 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 142, 453
PkrI GCNGC 4 cut(s) 10, 83, 86, 162
PleI GAGTC 2 cut(s) 315, 661
PluTI GGCGCC 1 cut(s) 744
PpsI GAGTC 2 cut(s) 315, 661
PshAI GACNNNNGTC 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 318, 371, 742
PspPI GGNCC 1 cut(s) 890
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 2 cut(s) 468, 795
RsaNI GTAC 2 cut(s) 467, 794
RseI CAYNNNNRTG 2 cut(s) 339, 636
SaqAI TTAA 3 cut(s) 189, 759, 931
SatI GCNGC 4 cut(s) 9, 82, 85, 161
Sau3AI GATC 2 cut(s) 316, 381
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 2 cut(s) 316, 661
SduI GDGCHC 1 cut(s) 735
SetI ASST 7 cut(s) 13, 156, 184, 254, 449, 653, 795
SfaNI GCATC 2 cut(s) 715, 727
SfoI GGCGCC 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 339, 636
Sse9I AATT 3 cut(s) 49, 432, 813
SsiI CCGC 6 cut(s) 65, 82, 85, 148, 158, 161
SspDI GGCGCC 1 cut(s) 740
SspMI CTAG 2 cut(s) 72, 566
StyI CCWWGG 2 cut(s) 182, 337
TaaI ACNGT 2 cut(s) 107, 638
TaiI ACGT 1 cut(s) 156
TasI AATT 3 cut(s) 49, 432, 813
TauI GCSGC 3 cut(s) 84, 87, 163
TfiI GAWTC 2 cut(s) 142, 453
Tru1I TTAA 3 cut(s) 189, 759, 931
Tru9I TTAA 3 cut(s) 189, 759, 931
TscAI CASTG 1 cut(s) 708
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 6 cut(s) 126, 188, 368, 388, 485, 607
TspRI CASTG 1 cut(s) 708
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 813
XceI RCATGY 1 cut(s) 800
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 2 cut(s) 72, 566
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.