FvH4_6g28080

Serine incorporator

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21601575 .. 21605392
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28080.t1

Sequence Viewer

Length: 1245 bp
ATGTGGGCAGCTTCGTGCCTCGCGTCATGTTGTGCCGGCTGTGCTTGCAATTTGTGCCAGTCGGCCGTCTCTAGTATTAGCCGCCGCTCCGCAAGGATTGCATACTGTTTCCTCTTTGCCTTTTCTCTCATTGCCTCATGGATTCTCCGTGACGTCGCGCCGCCTCTGCTCGAAAAGATACCTTGGATTAATCATTTTCATCAGATACCGGATAGGGAGTGGTTTGAGACCGAGGCCGTGCTTCGTGTAAGCTTGGGGAATTTTCTGTTCTTCACCATCCTGTCTGTTGTGATGATTGGTGTCAAGAGTCAGAAGGATCCCCGTGACAGTATCCACCATGGTGGATGGATGATGAAAGTCATTTGCTGGTTCCTCTTGGTGCTCTTCTCCTTGTTTTTCGTGCCAAATGGGGTTATTAGTTTCTATGAGACAATTGCAAAGTTTGGCTCAGGATTCTTTCTTCTCGTACAAGTTGTGCTTCTGTTGGATTTTGTTCATGGATGGAACGACAAATGGGTTTCATATGATGAGCAGTTCTGGTATGTTGCTCTTTTTGTTGTTTCTCTGGTTTGTTATCTGGCAACATTCGTCTTCTCTGGACTTCTTTTCCATTTGTTCACACCATCTGGACATGACTGCGGGCTCAATACCTTCTTCATCGTCATGACTCTGATATTTGTTTTTGTTTTTCTTATAGTGGCACTGCATCCTACTGTAGGTGGCAGCATTTTACCTGCGTCAGTTATATCTGTGTACTGTACTTATCTCTGCTATAGTGCACTTGCTAGCGAGCCGAGGGACTATGAGTGCAATAGTCTCCACAAGCATTCTAAAGCTGTTTCCACTGGGACTCTTACCTTAGGTTTGCTTACCACTGTTCTTTCTGTGGTTTATTCTGCTGTGCGTGCTGGATCTTCCACAACTCTTTTGTCCCCGCCTAGTTCGCCTCGTGCAGGTGCTGGGAAACCACTGCTCCCATTGGATAAGCCGGAAGAACGTGAAGAAAATGAGAAAGCCAAGTCAGTGTCGTATTCATATGCCTTCTTCCACATCATCTTCTCACTTGCAAGTATGTACTCGGCTATGCTTCTGACAGGGTGGTCAACCTCAGTTGGGGAGAGTGGGAAGTTGATTGATGTGGGTTGGCCGTCCGTTTGGGTGAGGGTCATGACTAGTTGGGCAACTGCAGGTCTCTACATCTGGTCCCTTTTGGCTCCAATTCTGTTCCCTGAGAGGGAATTCTAA

Protein Analysis

415

Amino Acids

46.13

Weight (kDa)

6.81

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 8 - 412 4e-120 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 944
AasI GACNNNNNNGTC 1 cut(s) 1099
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 3 cut(s) 742, 944, 1178
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 2 cut(s) 23, 158
AciI CCGC 6 cut(s) 82, 85, 90, 161, 639, 935
AclWI GGATC 3 cut(s) 311, 324, 919
AcoI YGGCCR 2 cut(s) 63, 1145
AcsI RAATTY 2 cut(s) 259, 1238
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 4 cut(s) 468, 755, 760, 1076
AfiI CCNNNNNNNGG 4 cut(s) 716, 953, 1113, 1234
AhlI ACTAGT 1 cut(s) 1172
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 3 cut(s) 11, 252, 836
AluI AGCT 3 cut(s) 11, 252, 836
Alw21I GWGCWC 2 cut(s) 384, 781
Alw26I GTCTC 5 cut(s) 73, 221, 422, 821, 1196
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 3 cut(s) 311, 324, 919
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 3 cut(s) 63, 234, 1145
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 2 cut(s) 8, 723
ApoI RAATTY 2 cut(s) 259, 1238
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 1203
AsuHPI GGTGA 2 cut(s) 265, 1171
AsuNHI GCTAGC 1 cut(s) 785
AvaII GGWCC 1 cut(s) 1203
AxyI CCTNAGG 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 781
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 645
BauI CACGAG 1 cut(s) 948
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 2 cut(s) 384, 781
BbvI GCAGC 2 cut(s) 20, 735
BccI CCATC 4 cut(s) 284, 339, 495, 631
BceAI ACGGC 3 cut(s) 50, 221, 1132
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 5 cut(s) 73, 221, 422, 821, 1196
BcuI ACTAGT 1 cut(s) 1172
BfaI CTAG 4 cut(s) 72, 786, 939, 1173
BfmI CTRYAG 3 cut(s) 714, 772, 1185
BfuAI ACCTGC 3 cut(s) 742, 944, 1178
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 5 cut(s) 9, 82, 85, 161, 724
BlsI GCNGC 5 cut(s) 10, 83, 86, 162, 725
Bme18I GGWCC 1 cut(s) 1203
BmgT120I GGNCC 1 cut(s) 1203
BmiI GGNNCC 4 cut(s) 318, 371, 1205, 1215
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 1 cut(s) 715
BmtI GCTAGC 1 cut(s) 789
BmuI ACTGGG 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 583
Bpu10I CCTNAGC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 221, 1196
BsaJI CCNNGG 4 cut(s) 182, 231, 337, 794
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 716, 953, 1113, 1234
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 58, 850
Bse21I CCTNAGG 1 cut(s) 859
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 182, 231, 337, 794
BseGI GGATG 5 cut(s) 276, 350, 354, 506, 706
BseLI CCNNNNNNNGG 4 cut(s) 716, 953, 1113, 1234
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 462, 1122, 1221
BseNI ACTGG 2 cut(s) 58, 850
BseSI GKGCMC 1 cut(s) 781
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 20, 735
BseYI CCCAGC 1 cut(s) 959
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 2 cut(s) 23, 158
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 236, 1147
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 384, 781
BsiSI CCGG 3 cut(s) 36, 209, 989
BslFI GGGAC 4 cut(s) 812, 862, 916, 1189
BslI CCNNNNNNNGG 4 cut(s) 716, 953, 1113, 1234
BsmAI GTCTC 5 cut(s) 73, 221, 422, 821, 1196
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 4 cut(s) 812, 862, 916, 1189
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 3 cut(s) 65, 236, 1147
Bso31I GGTCTC 2 cut(s) 221, 1196
Bsp1286I GDGCHC 3 cut(s) 384, 645, 781
Bsp143I GATC 2 cut(s) 316, 911
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 6 cut(s) 82, 85, 90, 161, 639, 935
BspANI GGCC 3 cut(s) 65, 236, 1147
BspCNI CTCAG 3 cut(s) 461, 1121, 1222
BspFNI CGCG 2 cut(s) 23, 158
BspHI TCATGA 2 cut(s) 663, 1167
BspLI GGNNCC 4 cut(s) 318, 371, 1205, 1215
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 3 cut(s) 742, 944, 1178
BspOI GCTAGC 1 cut(s) 789
BspPI GGATC 3 cut(s) 311, 324, 919
BspQI GCTCTTC 1 cut(s) 389
BspTNI GGTCTC 2 cut(s) 221, 1196
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 58, 850
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 182, 231, 337, 794
BssMI GATC 2 cut(s) 316, 911
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 948
BssT1I CCWWGG 2 cut(s) 182, 337
Bst2BI CACGAG 1 cut(s) 948
Bst4CI ACNGT 5 cut(s) 107, 329, 715, 758, 877
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 2 cut(s) 54, 98
BstC8I GCNNGC 6 cut(s) 37, 46, 641, 787, 791, 906
BstDEI CTNAG 4 cut(s) 448, 859, 1108, 1230
BstDSI CCRYGG 1 cut(s) 337
BstENI CCTNNNNNAGG 2 cut(s) 714, 951
BstF5I GGATG 5 cut(s) 276, 350, 354, 506, 706
BstFNI CGCG 2 cut(s) 23, 158
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 319, 914
BstMAI GTCTC 5 cut(s) 73, 221, 422, 821, 1196
BstMBI GATC 2 cut(s) 316, 911
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 7 cut(s) 41, 45, 54, 98, 166, 905, 943
BstSFI CTRYAG 3 cut(s) 714, 772, 1185
BstSLI GKGCMC 1 cut(s) 781
BstUI CGCG 2 cut(s) 23, 158
BstV1I GCAGC 2 cut(s) 20, 735
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 2 cut(s) 316, 911
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 2 cut(s) 316, 911
BstZI CGGCCG 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 859
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 3 cut(s) 65, 236, 1147
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 5 cut(s) 276, 350, 354, 506, 706
BtsI GCAGTG 2 cut(s) 701, 968
BtsIMutI CAGTG 5 cut(s) 701, 843, 873, 968, 1029
BveI ACCTGC 3 cut(s) 742, 944, 1178
Cac8I GCNNGC 6 cut(s) 37, 46, 641, 787, 791, 906
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 2 cut(s) 663, 1167
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 1203
CseI GACGC 2 cut(s) 12, 726
Csp6I GTAC 4 cut(s) 467, 754, 759, 1075
CviAII CATG 7 cut(s) 27, 138, 338, 497, 632, 664, 1168
CviQI GTAC 4 cut(s) 467, 754, 759, 1075
DdeI CTNAG 4 cut(s) 448, 859, 1108, 1230
DpnI GATC 2 cut(s) 318, 913
DpnII GATC 2 cut(s) 316, 911
DrdI GACNNNNNNGTC 1 cut(s) 1099
DseDI GACNNNNNNGTC 1 cut(s) 1099
EaeI YGGCCR 2 cut(s) 63, 1145
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 182, 337
Eco24I GRGCYC 1 cut(s) 645
Eco31I GGTCTC 2 cut(s) 221, 1196
Eco47I GGWCC 1 cut(s) 1203
Eco52I CGGCCG 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 859
EcoNI CCTNNNNNAGG 2 cut(s) 714, 951
EcoRI GAATTC 1 cut(s) 1238
EcoT14I CCWWGG 2 cut(s) 182, 337
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 182, 337
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 7 cut(s) 30, 141, 341, 500, 635, 667, 1171
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 4 cut(s) 812, 862, 916, 1189
FatI CATG 7 cut(s) 26, 137, 337, 496, 631, 663, 1167
FauI CCCGC 2 cut(s) 632, 942
FauNDI CATATG 2 cut(s) 523, 1036
Fnu4HI GCNGC 5 cut(s) 9, 82, 85, 161, 724
FokI GGATG 5 cut(s) 263, 357, 361, 513, 693
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 5 cut(s) 9, 82, 85, 161, 724
FspBI CTAG 4 cut(s) 72, 786, 939, 1173
GlaI GCGC 1 cut(s) 159
GluI GCNGC 5 cut(s) 9, 82, 85, 161, 724
GsaI CCCAGC 1 cut(s) 963
HaeIII GGCC 3 cut(s) 65, 236, 1147
HapII CCGG 3 cut(s) 36, 209, 989
HgaI GACGC 2 cut(s) 12, 726
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 7 cut(s) 30, 141, 341, 500, 635, 667, 1171
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 1104
HindII GTYRAC 1 cut(s) 1104
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 142, 307, 453, 667, 850
HpaII CCGG 3 cut(s) 36, 209, 989
HphI GGTGA 2 cut(s) 265, 1171
Hpy166II GTNNAC 4 cut(s) 618, 754, 779, 1104
Hpy188I TCNGA 4 cut(s) 204, 312, 672, 1092
Hpy188III TCNNGA 6 cut(s) 304, 450, 597, 627, 664, 1168
Hpy8I GTNNAC 4 cut(s) 618, 754, 779, 1104
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 307, 661, 1051
HpyCH4III ACNGT 5 cut(s) 107, 329, 715, 758, 877
HpyCH4IV ACGT 2 cut(s) 153, 997
HpyCH4V TGCA 9 cut(s) 48, 101, 437, 706, 779, 810, 953, 1067, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 45, 54, 98, 166, 905, 943
HpyF3I CTNAG 4 cut(s) 448, 859, 1108, 1230
HpySE526I ACGT 2 cut(s) 153, 997
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 7 cut(s) 30, 141, 341, 500, 635, 667, 1171
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 316, 911
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 3 cut(s) 92, 978, 1219
Lsp1109I GCAGC 2 cut(s) 20, 735
LweI GCATC 1 cut(s) 715
MaeI CTAG 4 cut(s) 72, 786, 939, 1173
MaeII ACGT 2 cut(s) 153, 997
MaeIII GTNAC 2 cut(s) 149, 323
MalI GATC 2 cut(s) 318, 913
MbiI CCGCTC 1 cut(s) 87
MboI GATC 2 cut(s) 316, 911
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 2 cut(s) 316, 911
MhlI GDGCHC 3 cut(s) 384, 645, 781
MluCI AATT 5 cut(s) 49, 259, 432, 1218, 1238
MlyI GAGTC 3 cut(s) 316, 661, 844
MmeI TCCRAC 1 cut(s) 465
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 339, 662
MspI CCGG 3 cut(s) 36, 209, 989
MunI CAATTG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 2 cut(s) 23, 158
MwoI GCNNNNNNNGC 7 cut(s) 41, 45, 54, 98, 166, 905, 943
NaeI GCCGGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 337
NdeI CATATG 2 cut(s) 523, 1036
NdeII GATC 2 cut(s) 316, 911
NgoMIV GCCGGC 1 cut(s) 35
NheI GCTAGC 1 cut(s) 785
NlaIII CATG 7 cut(s) 30, 141, 341, 500, 635, 667, 1171
NlaIV GGNNCC 4 cut(s) 318, 371, 1205, 1215
NmeAIII GCCGAG 2 cut(s) 819, 1058
NmuCI GTSAC 2 cut(s) 149, 323
OliI CACNNNNGTG 1 cut(s) 339
PagI TCATGA 2 cut(s) 663, 1167
PaqCI CACCTGC 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 142, 453
PkrI GCNGC 5 cut(s) 10, 83, 86, 162, 725
PleI GAGTC 3 cut(s) 315, 661, 844
PpsI GAGTC 3 cut(s) 315, 661, 844
PshBI ATTAAT 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 959
PspN4I GGNNCC 4 cut(s) 318, 371, 1205, 1215
PspPI GGNCC 1 cut(s) 1203
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 316, 911
RsaI GTAC 4 cut(s) 468, 755, 760, 1076
RsaNI GTAC 4 cut(s) 467, 754, 759, 1075
RseI CAYNNNNRTG 2 cut(s) 339, 662
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 5 cut(s) 9, 82, 85, 161, 724
Sau3AI GATC 2 cut(s) 316, 911
Sau96I GGNCC 1 cut(s) 1203
SchI GAGTC 3 cut(s) 316, 661, 844
SduI GDGCHC 3 cut(s) 384, 645, 781
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 3 cut(s) 714, 772, 1185
SinI GGWCC 1 cut(s) 1203
SmiMI CAYNNNNRTG 2 cut(s) 339, 662
SpeI ACTAGT 1 cut(s) 1172
Sse9I AATT 5 cut(s) 49, 259, 432, 1218, 1238
SsiI CCGC 6 cut(s) 82, 85, 90, 161, 639, 935
SspMI CTAG 4 cut(s) 72, 786, 939, 1173
StyI CCWWGG 2 cut(s) 182, 337
TaaI ACNGT 5 cut(s) 107, 329, 715, 758, 877
TaiI ACGT 2 cut(s) 156, 1000
TaqI TCGA 1 cut(s) 171
TaqII GACCGA 1 cut(s) 245
TasI AATT 5 cut(s) 49, 259, 432, 1218, 1238
TatI WGTACW 3 cut(s) 753, 758, 1074
TauI GCSGC 3 cut(s) 84, 87, 163
TfiI GAWTC 2 cut(s) 142, 453
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 5 cut(s) 708, 850, 880, 975, 1029
TseFI GTSAC 2 cut(s) 149, 323
TseI GCWGC 2 cut(s) 8, 723
Tsp45I GTSAC 2 cut(s) 149, 323
TspDTI ATGAA 6 cut(s) 188, 368, 485, 510, 646, 1023
TspGWI ACGGA 2 cut(s) 137, 1141
TspRI CASTG 5 cut(s) 708, 850, 880, 975, 1029
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 1203
VspI ATTAAT 1 cut(s) 189
XagI CCTNNNNNAGG 2 cut(s) 714, 951
XapI RAATTY 2 cut(s) 259, 1238
XspI CTAG 4 cut(s) 72, 786, 939, 1173
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.