Rorug02G0301300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000790
Physical Location & Seq
Reverse (-)
33626780 .. 33628751
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0301300.1

Sequence Viewer

Length: 468 bp
ATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCTCTCTTTGTCCCTGCTGCTTTCCGCCAAGTGGAAGATTTCTCCCCTGAATGGTGGCAACTGGTCACCACCTCTACATGGTACCATGAATATTGGCTCAGTCAGAACCAGGATGAGGATGGTTTCTATGATAATGCTCAGGAAAACTATGACAATGTAGCTGATTTGCTTCCTGAGACCTTTGATCTTGATGCTGGAGAGGACTTCTCTAGTTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGTAAAAATGCAGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAAGGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

155

Amino Acids

17.74

Weight (kDa)

4.54

Isoelectric Point (pI)

63.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 373
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AciI CCGC 2 cut(s) 67, 445
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 2 cut(s) 321, 362
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 4 cut(s) 73, 93, 120, 157
AgsI TTSAA 4 cut(s) 31, 260, 275, 352
AjnI CCWGG 2 cut(s) 6, 150
AluBI AGCT 2 cut(s) 203, 266
AluI AGCT 2 cut(s) 203, 266
Alw26I GTCTC 2 cut(s) 212, 297
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 59, 263, 332, 438, 457
ApoI RAATTY 1 cut(s) 346
Asp718I GGTACC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 100
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 46, 275, 319, 450
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 2 cut(s) 8, 152
BcoDI GTCTC 2 cut(s) 212, 297
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 5 cut(s) 60, 264, 333, 439, 458
BlsI GCNGC 5 cut(s) 61, 265, 334, 440, 459
Bme1390I CCNGG 2 cut(s) 8, 152
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 125, 390
BmrFI CCNGG 2 cut(s) 8, 152
BmsI GCATC 2 cut(s) 223, 365
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 2 cut(s) 258, 269
Bpu10I CCTNAGC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 6, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 93, 120, 157
Bse1I ACTGG 2 cut(s) 108, 286
BseBI CCWGG 2 cut(s) 8, 152
BseDI CCNNGG 2 cut(s) 6, 392
BseGI GGATG 3 cut(s) 160, 166, 450
BseLI CCNNNNNNNGG 4 cut(s) 73, 93, 120, 157
BseMII CTCAG 4 cut(s) 154, 194, 207, 281
BseNI ACTGG 2 cut(s) 108, 286
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 4 cut(s) 46, 275, 319, 450
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 123
BslFI GGGAC 2 cut(s) 38, 357
BslI CCNNNNNNNGG 4 cut(s) 73, 93, 120, 157
BsmAI GTCTC 2 cut(s) 212, 297
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 38, 357
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 20, 226
BspACI CCGC 2 cut(s) 67, 445
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 153, 193, 208, 280
BspLI GGNNCC 2 cut(s) 125, 390
BspMAI CTGCAG 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 108, 286
BssECI CCNNGG 2 cut(s) 6, 392
BssMI GATC 2 cut(s) 20, 226
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 8, 152
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 140, 180, 216, 267
BstEII GGTNACC 1 cut(s) 106
BstF5I GGATG 3 cut(s) 160, 166, 450
BstKTI GATC 2 cut(s) 23, 229
BstMAI GTCTC 2 cut(s) 212, 297
BstMBI GATC 2 cut(s) 20, 226
BstMWI GCNNNNNNNGC 2 cut(s) 388, 444
BstNI CCWGG 2 cut(s) 8, 152
BstPI GGTNACC 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 6, 150
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 4 cut(s) 46, 275, 319, 450
BstXI CCANNNNNNTGG 1 cut(s) 382
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 160, 166, 450
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 120, 128
CviJI RGCY 9 cut(s) 5, 139, 203, 266, 391, 412, 416, 441, 460
CviKI_1 RGCY 9 cut(s) 5, 139, 203, 266, 391, 412, 416, 441, 460
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 4 cut(s) 140, 180, 216, 267
DpnI GATC 2 cut(s) 22, 228
DpnII GATC 2 cut(s) 20, 226
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 2 cut(s) 321, 362
Eco91I GGTNACC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 6, 150
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 2 cut(s) 123, 131
FaiI YATR 6 cut(s) 121, 129, 171, 192, 326, 402
FaqI GGGAC 2 cut(s) 38, 357
FatI CATG 2 cut(s) 119, 127
FauI CCCGC 1 cut(s) 452
Fnu4HI GCNGC 5 cut(s) 60, 264, 333, 439, 458
FokI GGATG 3 cut(s) 167, 173, 437
Fsp4HI GCNGC 5 cut(s) 60, 264, 333, 439, 458
FspBI CTAG 1 cut(s) 252
GluI GCNGC 5 cut(s) 60, 264, 333, 439, 458
GsuI CTGGAG 2 cut(s) 258, 269
HaeIII GGCC 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 2 cut(s) 123, 131
HinfI GANTC 2 cut(s) 31, 427
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 36, 147, 342, 361
Hpy188III TCNNGA 4 cut(s) 15, 182, 215, 230
HpyAV CCTTC 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 314, 335, 404, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 388, 444
HpyF3I CTNAG 4 cut(s) 140, 180, 216, 267
HpySE526I ACGT 1 cut(s) 370
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 2 cut(s) 123, 131
KpnI GGTACC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 20, 226
LmnI GCTCC 2 cut(s) 46, 388
Lsp1109I GCAGC 4 cut(s) 46, 275, 319, 450
LweI GCATC 2 cut(s) 223, 365
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 22, 228
MboI GATC 2 cut(s) 20, 226
MboII GAAGA 5 cut(s) 30, 89, 287, 355, 374
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 5 cut(s) 54, 124, 151, 235, 293
MspR9I CCNGG 2 cut(s) 8, 152
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 8, 152
MwoI GCNNNNNNNGC 2 cut(s) 388, 444
NdeII GATC 2 cut(s) 20, 226
NlaIII CATG 2 cut(s) 123, 131
NlaIV GGNNCC 2 cut(s) 125, 390
NmuCI GTSAC 1 cut(s) 106
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 5 cut(s) 61, 265, 334, 440, 459
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 6, 150
PspEI GGTNACC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 6, 150
PspN4I GGNNCC 2 cut(s) 125, 390
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 337
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 5 cut(s) 60, 264, 333, 439, 458
Sau3AI GATC 2 cut(s) 20, 226
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 8, 152
SetI ASST 6 cut(s) 116, 205, 224, 268, 307, 373
SfaNI GCATC 2 cut(s) 223, 365
SfcI CTRYAG 1 cut(s) 333
Sse9I AATT 1 cut(s) 346
SsiI CCGC 2 cut(s) 67, 445
SspI AATATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 6, 150
StyI CCWWGG 1 cut(s) 392
TaiI ACGT 1 cut(s) 373
TasI AATT 1 cut(s) 346
TfiI GAWTC 1 cut(s) 31
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 5 cut(s) 59, 263, 332, 438, 457
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 144, 439
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 2 cut(s) 158, 382
XspI CTAG 1 cut(s) 252
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.