Rw2G028760

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000790
Physical Location & Seq
Forward (+)
46231196 .. 46231642
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028760.1

Sequence Viewer

Length: 447 bp
ATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCCCAACAGTCATTGGCAGTAACAAGATGAATAGTACAGCAGATAAGGGTACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTTCTTTATCCTATCTCTGCAACCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTCATGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTTTAGAAGTGGAGAAAGCTATCCTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTTTTGATCGAGAACTACAGACAAACCAACAATTACTCCTTTGTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

16.87

Weight (kDa)

9.6

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 104 2e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 392
AciI CCGC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 4 cut(s) 60, 124, 139, 270
AfiI CCNNNNNNNGG 1 cut(s) 68
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 5 cut(s) 28, 217, 319, 347, 381
AluI AGCT 5 cut(s) 28, 217, 319, 347, 381
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 160, 310
Asp718I GGTACC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 160, 310
BfmI CTRYAG 1 cut(s) 410
BlpI GCTNAGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 160, 310
BsmBI CGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 400
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 58
BssMI GATC 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 71, 231
BstDEI CTNAG 2 cut(s) 14, 371
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 160, 310
BstMBI GATC 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 7
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 4 cut(s) 59, 123, 138, 269
CviAII CATG 1 cut(s) 292
CviJI RGCY 7 cut(s) 18, 28, 217, 319, 347, 370, 381
CviKI_1 RGCY 7 cut(s) 18, 28, 217, 319, 347, 370, 381
CviQI GTAC 4 cut(s) 59, 123, 138, 269
DdeI CTNAG 2 cut(s) 14, 371
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 71, 231
EarI CTCTTC 2 cut(s) 71, 231
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 176, 293, 300, 302
FatI CATG 1 cut(s) 291
FblI GTMKAC 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 295
HinfI GANTC 1 cut(s) 281
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 2 cut(s) 232, 446
Hpy188III TCNNGA 3 cut(s) 252, 292, 404
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 6, 169
HpyCH4V TGCA 2 cut(s) 52, 198
HpyF3I CTNAG 2 cut(s) 14, 371
HpySE526I ACGT 2 cut(s) 6, 169
Hsp92II CATG 1 cut(s) 295
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 1 cut(s) 75
MaeII ACGT 2 cut(s) 6, 169
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 4 cut(s) 34, 88, 245, 248
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 295, 355, 425
MnlI CCTC 3 cut(s) 66, 299, 362
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 400
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 60
PagI TCATGA 1 cut(s) 291
PfeI GAWTC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 4 cut(s) 60, 124, 139, 270
RsaNI GTAC 4 cut(s) 59, 123, 138, 269
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 219
SetI ASST 9 cut(s) 9, 30, 60, 64, 172, 219, 321, 349, 383
SfcI CTRYAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 295, 355, 425
SsiI CCGC 1 cut(s) 258
SstI GAGCTC 1 cut(s) 219
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 2 cut(s) 9, 172
TaqI TCGA 2 cut(s) 251, 403
TasI AATT 3 cut(s) 295, 355, 425
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 131, 308
VpaK11BI GGWCC 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.