MD07G1151400.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000790
Physical Location & Seq
Reverse (-)
22071122 .. 22071418
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1151400.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGTATATACCATTGACAAGAGACGTTTTGTACTGCTGTTATCCTACCTCTCTAACCACATTTTTCAAGAGCTTTTCAAGATCTCCAAGGAAGCATATGGAATCTCAAGTAGTGAACCTATCATCTTGCCATGTGATTCATTCTTCATGAATTACATGGTCTCACTTGTCAAGCAAGGCCGTCTTACTGTAGATACGAAGAAAGCTTTACTTAATTCTATTGCCAGTAGCTGCTCAATTAATTTTAGTTTACATCAAGGACAAACAAGCCTACAATTACTACTTTATGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

8.98

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 1 - 56 6.1e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 2 cut(s) 68, 79
AluBI AGCT 3 cut(s) 73, 206, 231
AluI AGCT 3 cut(s) 73, 206, 231
Alw26I GTCTC 2 cut(s) 16, 166
AlwNI CAGNNNCTG 1 cut(s) 231
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 231
AseI ATTAAT 1 cut(s) 240
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 16, 166
BfmI CTRYAG 1 cut(s) 189
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 16, 166
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 180
BspHI TCATGA 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 190
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 16, 166
BstMBI GATC 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 147
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 132, 148, 157
CviJI RGCY 5 cut(s) 73, 180, 206, 231, 270
CviKI_1 RGCY 5 cut(s) 73, 180, 206, 231, 270
CviQI GTAC 1 cut(s) 32
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 135, 151, 160
FaiI YATR 8 cut(s) 7, 9, 97, 99, 133, 149, 158, 288
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 195, 227
FatI CATG 3 cut(s) 131, 147, 156
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 3 cut(s) 135, 151, 160
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 2 cut(s) 102, 137
Hpy166II GTNNAC 2 cut(s) 116, 251
Hpy188III TCNNGA 3 cut(s) 68, 79, 148
Hpy8I GTNNAC 2 cut(s) 116, 251
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 135, 151, 160
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 218
MaeII ACGT 1 cut(s) 25
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 2 cut(s) 136, 211
MflI RGATCY 1 cut(s) 81
MluCI AATT 5 cut(s) 151, 214, 237, 241, 275
MnlI CCTC 1 cut(s) 59
MseI TTAA 2 cut(s) 213, 240
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 81
NlaIII CATG 3 cut(s) 135, 151, 160
PagI TCATGA 1 cut(s) 147
PfeI GAWTC 2 cut(s) 102, 137
PkrI GCNGC 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 213, 240
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 81
SetI ASST 6 cut(s) 28, 51, 75, 121, 208, 233
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 5 cut(s) 151, 214, 237, 241, 275
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 28
TasI AATT 5 cut(s) 151, 214, 237, 241, 275
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 2 cut(s) 102, 137
Tru1I TTAA 2 cut(s) 213, 240
Tru9I TTAA 2 cut(s) 213, 240
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 129, 136, 164
VspI ATTAAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.