Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Forward (+)

10319732 .. 10320402

Gene Structure 671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTTAAGGAGGAAAAGAATCTCATTCCAGAGATCAAATTCTACTACTAGTAGCTCATCCGCGGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTTTCCGATAAGTTACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGGTATTCCCACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTGGAGTATCTCATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

10.0

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	5 - 96	1.4e-27	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	114, 116, 149
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	39, 63, 248
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	203, 214
AhlI	ACTAGT	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	108, 208
AluI	AGCT	2 cut(s)	108, 208
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	22
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 63, 248
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	3 cut(s)	39, 63, 248
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	39, 63, 248
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	86, 151
BspACI	CCGC	3 cut(s)	114, 116, 149
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	21
BspPI	GGATC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	86, 151
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	2 cut(s)	89, 154
BstMBI	GATC	2 cut(s)	86, 151
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	32, 56, 108, 129, 208
CviKI_1	RGCY	5 cut(s)	32, 56, 108, 129, 208
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	88, 153
DpnII	GATC	2 cut(s)	86, 151
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	25
FaiI	YATR	1 cut(s)	23
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	3 cut(s)	72, 272, 277
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	174, 223
Hpy188III	TCNNGA	4 cut(s)	22, 82, 203, 211
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	118, 242
HpyCH4IV	ACGT	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	86, 151
LpnPI	CCDG	2 cut(s)	95, 197
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	179, 188
MalI	GATC	2 cut(s)	88, 153
MboI	GATC	2 cut(s)	86, 151
MboII	GAAGA	4 cut(s)	37, 226, 236, 239
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	91, 304
MluNI	TGGCCA	1 cut(s)	32
MnlI	CCTC	1 cut(s)	57
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	116
NdeII	GATC	2 cut(s)	86, 151
NlaIII	CATG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	72, 272, 277
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	86, 151
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	110, 186, 210, 263
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	2 cut(s)	91, 304
SsiI	CCGC	3 cut(s)	114, 116, 149
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	210
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	270, 275, 280
TasI	AATT	2 cut(s)	91, 304
TfiI	GAWTC	3 cut(s)	72, 272, 277
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	20, 38
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	91
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.