Rh2CG338300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000790
Physical Location & Seq
Forward (+)
45024840 .. 45026373
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG338300.1

Sequence Viewer

Length: 450 bp
ATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCCCAACAGTCATTGGCAGTAACAAGATGAATAGTACTACAGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATCTCTGCAACCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTCATGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTTTAGAAGTGGAGAAAGCTATCCTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTTTTGATCGAGAACTACGGACCAACCAACAATTACTCCTTTGTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

149

Amino Acids

17.01

Weight (kDa)

9.71

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 1.5e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 395
AciI CCGC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 3 cut(s) 60, 124, 273
AfiI CCNNNNNNNGG 1 cut(s) 68
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 5 cut(s) 28, 220, 322, 350, 384
AluI AGCT 5 cut(s) 28, 220, 322, 350, 384
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 163, 313
Asp718I GGTACC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 263, 417
AsuHPI GGTGA 1 cut(s) 78
AvaII GGWCC 2 cut(s) 263, 417
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 163, 313
BfmI CTRYAG 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 263, 417
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 263, 417
BmiI GGNNCC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 163, 313
BsmBI CGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 143, 222
Bsp143I GATC 1 cut(s) 403
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 58
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 71, 234
BstDEI CTNAG 2 cut(s) 14, 374
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 2 cut(s) 163, 313
BstMBI GATC 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 143
BtrI CACGTC 1 cut(s) 7
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 263, 417
Csp6I GTAC 3 cut(s) 59, 123, 272
CviAII CATG 1 cut(s) 295
CviJI RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviKI_1 RGCY 7 cut(s) 18, 28, 220, 322, 350, 373, 384
CviQI GTAC 3 cut(s) 59, 123, 272
DdeI CTNAG 2 cut(s) 14, 374
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 71, 234
EarI CTCTTC 2 cut(s) 71, 234
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 263, 417
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 1 cut(s) 298
FaiI YATR 4 cut(s) 179, 296, 303, 305
FatI CATG 1 cut(s) 294
FblI GTMKAC 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 298
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 255, 295, 407
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 6, 172
HpyCH4V TGCA 2 cut(s) 52, 201
HpyF3I CTNAG 2 cut(s) 14, 374
HpySE526I ACGT 2 cut(s) 6, 172
Hsp92II CATG 1 cut(s) 298
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 1 cut(s) 75
MaeII ACGT 2 cut(s) 6, 172
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 4 cut(s) 34, 88, 248, 251
MhlI GDGCHC 2 cut(s) 143, 222
MluCI AATT 3 cut(s) 298, 358, 428
MnlI CCTC 3 cut(s) 66, 302, 365
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 60
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 263, 417
RsaI GTAC 3 cut(s) 60, 124, 273
RsaNI GTAC 3 cut(s) 59, 123, 272
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 263, 417
ScaI AGTACT 1 cut(s) 124
SduI GDGCHC 2 cut(s) 143, 222
SetI ASST 9 cut(s) 9, 30, 60, 64, 175, 222, 324, 352, 386
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 263, 417
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 298, 358, 428
SsiI CCGC 1 cut(s) 261
SstI GAGCTC 1 cut(s) 222
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 2 cut(s) 9, 175
TaqI TCGA 2 cut(s) 254, 406
TasI AATT 3 cut(s) 298, 358, 428
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 131, 311
TspGWI ACGGA 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 263, 417
XmiI GTMKAC 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.