Rorug02G0301400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000790
Physical Location & Seq
Forward (+)
33650084 .. 33654222
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0301400.1

Sequence Viewer

Length: 744 bp
ATGGGAAAGCTTCCACAACTAATTAAGAAGGCAGATAAAGAAGAAGATACTATAGTCCAAGACACCAACACTGGCGACAAAGAAGAGACGGAGCACCAAAAGGAAGGTGGTGATGACAGTACCTTCGATTACGGAACTTATGAGCCATCTGATCTAGACGAAGACTTAGATAATTCATTATGTTCTGTTGTTAGACACAATCTAGCACCTCCTACAACTCAAGCTTCAAGTGCAGCTGCTGTCTCAAGTTCTGCCGTTGAGTGCCTCAAACTTACCTTGGCTGAAATGAGTCTTCCAGGTAGCTTCAATGATCAAGAAGATATAAAGCAACAGCTTTTGCACGGACCTAGTAGCAGAGATGCTAACTATGATGCACGGAAACGCGAAAATGCCCGCGTATCCCGTATCGAAACGGGAAACGGAGACTCAGAGAGTTCAGACCCAGAGAATAGCTTGGAGAAGATCAAGCGCCAGCTTGCTTCCGGTTTCCGTCGGAACTTGCTCCAGGGCCCACTCCCCACTCCTCAAGCGATCCAAGACTGTGCAGTAAGTAAAGAAGATAGCAAGGGGAATTCTCCCCTTAAAAGAGGTACAAACAAAGACTCTAAGCAACAGATTAGCCACTTTATTTTCAGGGAGAGGAGACTAGAGTTGTTTGCAAACTGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACTCCATTTTCAGAAACTTATCCCTTGGAACCTTCTGTCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

247

Amino Acids

27.37

Weight (kDa)

5.39

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 384, 396
AciI CCGC 1 cut(s) 394
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 1 cut(s) 571
AfaI GTAC 2 cut(s) 121, 592
AgsI TTSAA 2 cut(s) 228, 307
AjnI CCWGG 2 cut(s) 295, 504
AluBI AGCT 8 cut(s) 10, 224, 236, 303, 334, 453, 475, 671
AluI AGCT 8 cut(s) 10, 224, 236, 303, 334, 453, 475, 671
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 4 cut(s) 80, 247, 417, 637
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 508
ApaI GGGCCC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 233, 236
ApoI RAATTY 1 cut(s) 571
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 3 cut(s) 344, 508, 509
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 512
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BanII GRGCYC 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 168, 284
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 223, 245
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 2 cut(s) 297, 506
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 4 cut(s) 80, 247, 417, 637
BfaI CTAG 4 cut(s) 155, 203, 348, 647
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 472
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 2 cut(s) 234, 237
BlsI GCNGC 2 cut(s) 235, 238
Bme1390I CCNGG 2 cut(s) 297, 506
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 344, 508, 509
BmiI GGNNCC 2 cut(s) 510, 727
BmrFI CCNGG 2 cut(s) 297, 506
BmsI GCATC 2 cut(s) 349, 361
BpiI GAAGAC 2 cut(s) 168, 284
BpmI CTGGAG 2 cut(s) 488, 685
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 3 cut(s) 204, 229, 510
BsaJI CCNNGG 3 cut(s) 276, 505, 721
BsaWI WCCGGW 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 76, 668
BseBI CCWGG 2 cut(s) 297, 506
BseDI CCNNGG 3 cut(s) 276, 505, 721
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 2 cut(s) 76, 668
BseRI GAGGAG 2 cut(s) 513, 655
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 2 cut(s) 223, 245
BsgI GTGCAG 2 cut(s) 252, 564
Bsh1236I CGCG 2 cut(s) 384, 396
BshFI GGCC 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 483
BsmAI GTCTC 4 cut(s) 80, 247, 417, 637
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 510
Bsp120I GGGCCC 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 96, 512
Bsp143I GATC 4 cut(s) 151, 310, 462, 531
BspACI CCGC 1 cut(s) 394
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 440
BspFNI CGCG 2 cut(s) 384, 396
BspLI GGNNCC 2 cut(s) 510, 727
BspPI GGATC 1 cut(s) 526
BsrI ACTGG 2 cut(s) 76, 668
BssECI CCNNGG 3 cut(s) 276, 505, 721
BssMI GATC 4 cut(s) 151, 310, 462, 531
BssT1I CCWWGG 2 cut(s) 276, 721
Bst2UI CCWGG 2 cut(s) 297, 506
Bst4CI ACNGT 2 cut(s) 119, 542
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 394, 473, 477
BstDEI CTNAG 4 cut(s) 166, 427, 606, 672
BstFNI CGCG 2 cut(s) 384, 396
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 4 cut(s) 154, 313, 465, 534
BstMAI GTCTC 4 cut(s) 80, 247, 417, 637
BstMBI GATC 4 cut(s) 151, 310, 462, 531
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 2 cut(s) 297, 506
BstSCI CCNGG 2 cut(s) 295, 504
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 2 cut(s) 384, 396
BstV1I GCAGC 2 cut(s) 223, 245
BstV2I GAAGAC 2 cut(s) 168, 284
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 394, 473, 477
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 3 cut(s) 344, 508, 509
Csp6I GTAC 2 cut(s) 120, 591
CviQI GTAC 2 cut(s) 120, 591
DdeI CTNAG 4 cut(s) 166, 427, 606, 672
DpnI GATC 4 cut(s) 153, 312, 464, 533
DpnII GATC 4 cut(s) 151, 310, 462, 531
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 276, 721
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 295, 504
EcoT14I CCWWGG 2 cut(s) 276, 721
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 276, 721
Esp3I CGTCTC 1 cut(s) 80
FaiI YATR 5 cut(s) 53, 141, 181, 323, 369
FauI CCCGC 1 cut(s) 401
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 234, 237
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 234, 237
FspBI CTAG 4 cut(s) 155, 203, 348, 647
GlaI GCGC 1 cut(s) 470
GluI GCNGC 2 cut(s) 234, 237
GsuI CTGGAG 2 cut(s) 488, 685
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 1 cut(s) 510
HapII CCGG 1 cut(s) 483
HhaI GCGC 1 cut(s) 471
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HindIII AAGCTT 2 cut(s) 8, 222
HinfI GANTC 3 cut(s) 289, 425, 602
HpaII CCGG 1 cut(s) 483
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 5 cut(s) 151, 430, 439, 495, 710
Hpy188III TCNNGA 3 cut(s) 155, 314, 688
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 4 cut(s) 22, 98, 133, 739
HpyCH4III ACNGT 2 cut(s) 119, 542
HpyCH4V TGCA 5 cut(s) 233, 340, 374, 545, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 4 cut(s) 166, 427, 606, 672
HspAI GCGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 151, 310, 462, 531
LmnI GCTCC 2 cut(s) 91, 507
Lsp1109I GCAGC 2 cut(s) 223, 245
LweI GCATC 2 cut(s) 349, 361
MaeI CTAG 4 cut(s) 155, 203, 348, 647
MalI GATC 4 cut(s) 153, 312, 464, 533
MboI GATC 4 cut(s) 151, 310, 462, 531
MboII GAAGA 8 cut(s) 53, 56, 95, 173, 284, 329, 472, 569
MhlI GDGCHC 2 cut(s) 96, 512
MluCI AATT 3 cut(s) 21, 172, 571
MlyI GAGTC 3 cut(s) 298, 419, 596
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 5 cut(s) 219, 275, 534, 581, 633
MseI TTAA 2 cut(s) 24, 582
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 2 cut(s) 297, 506
MvaI CCWGG 2 cut(s) 297, 506
MvnI CGCG 2 cut(s) 384, 396
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 151, 310, 462, 531
NlaIV GGNNCC 2 cut(s) 510, 727
PkrI GCNGC 2 cut(s) 235, 238
PleI GAGTC 3 cut(s) 297, 419, 596
PpsI GAGTC 3 cut(s) 297, 419, 596
Psp6I CCWGG 2 cut(s) 295, 504
PspGI CCWGG 2 cut(s) 295, 504
PspN4I GGNNCC 2 cut(s) 510, 727
PspOMI GGGCCC 1 cut(s) 508
PspPI GGNCC 3 cut(s) 344, 508, 509
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 121, 592
RsaNI GTAC 2 cut(s) 120, 591
SaqAI TTAA 2 cut(s) 24, 582
SatI GCNGC 2 cut(s) 234, 237
Sau3AI GATC 4 cut(s) 151, 310, 462, 531
Sau96I GGNCC 3 cut(s) 344, 508, 509
SchI GAGTC 3 cut(s) 298, 419, 596
ScrFI CCNGG 2 cut(s) 297, 506
SduI GDGCHC 2 cut(s) 96, 512
SfaNI GCATC 2 cut(s) 349, 361
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 219, 244, 525
SmoI CTYRAG 3 cut(s) 219, 244, 525
Sse9I AATT 3 cut(s) 21, 172, 571
SsiI CCGC 1 cut(s) 394
SspMI CTAG 4 cut(s) 155, 203, 348, 647
StyD4I CCNGG 2 cut(s) 295, 504
StyI CCWWGG 2 cut(s) 276, 721
TaaI ACNGT 2 cut(s) 119, 542
TaqI TCGA 3 cut(s) 126, 408, 736
TasI AATT 3 cut(s) 21, 172, 571
Tru1I TTAA 2 cut(s) 24, 582
Tru9I TTAA 2 cut(s) 24, 582
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 233, 236
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 6 cut(s) 104, 147, 357, 391, 435, 479
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 571
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 4 cut(s) 155, 203, 348, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.