Rmu_sc0000584.1_g000015

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000584.1
OG0000790
Physical Location & Seq
Forward (+)
62392 .. 67615
5224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000584.1_g000015.1.cds

Sequence Viewer

Length: 495 bp
atggacgtgatgctcatcccgaagaagctcatcaaaatgacaaagaagttgcagaaggtacctgttattgggaggaagagagcttcacccccaacagtcactggcagtaacaagatgaatagtactaccgcagataagggcacttttgtcatctacacccttgacaagagacgttttatgcttcctttatcctatctctgcaaccacattttccaagagctctttaagacgtctgaagaagagttaggaatatcgagaagcgaaagaaaagctactcagtggaggacaaaatgggaaactgatgagatgttcatttggcggaagagaaggctgaggatgacgagagagcagaggaggactatgaagacatcagagatgagagaagaggtcgtcgagagcttggtcatcgctgatctctactcagacggaacgatggccatggagatggcggtttcaactgtaggagatattgggaatttcttgctggacggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

164

Amino Acids

19.14

Weight (kDa)

9.81

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 3 cut(s) 129, 319, 449
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 60, 124
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 456
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 5 cut(s) 28, 83, 220, 272, 399
AluI AGCT 5 cut(s) 28, 83, 220, 272, 399
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 435
ApoI RAATTY 1 cut(s) 475
Asp718I GGTACC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 427, 439
BcoDI GTCTC 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 459
BmcAI AGTACT 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 15, 342
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 290, 323, 435
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 367
BseSI GKGCMC 1 cut(s) 143
BshFI GGCC 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 143, 222
Bsp143I GATC 1 cut(s) 412
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 3 cut(s) 129, 319, 449
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 3 cut(s) 289, 324, 434
BspLI GGNNCC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 1 cut(s) 412
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 97, 460
Bst6I CTCTTC 4 cut(s) 71, 234, 317, 378
BstACI GRCGYC 1 cut(s) 230
BstDEI CTNAG 3 cut(s) 276, 332, 421
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 15, 342
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 445
BsuRI GGCC 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 391
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 15, 342
BtsIMutI CAGTG 2 cut(s) 99, 284
CaiI CAGNNNCTG 1 cut(s) 101
Csp6I GTAC 2 cut(s) 59, 123
CviAII CATG 1 cut(s) 439
CviJI RGCY 8 cut(s) 28, 83, 220, 272, 331, 399, 437, 492
CviKI_1 RGCY 8 cut(s) 28, 83, 220, 272, 331, 399, 437, 492
CviQI GTAC 2 cut(s) 59, 123
DdeI CTNAG 3 cut(s) 276, 332, 421
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 4 cut(s) 71, 234, 317, 378
EarI CTCTTC 4 cut(s) 71, 234, 317, 378
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 1 cut(s) 442
FaiI YATR 3 cut(s) 179, 362, 440
FatI CATG 1 cut(s) 438
FokI GGATG 2 cut(s) 2, 349
FriOI GRGCYC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 1 cut(s) 442
HphI GGTGA 1 cut(s) 78
Hpy188I TCNGA 3 cut(s) 235, 373, 424
Hpy188III TCNNGA 3 cut(s) 19, 255, 394
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 49, 321
HpyCH4III ACNGT 2 cut(s) 97, 460
HpyCH4IV ACGT 3 cut(s) 6, 172, 230
HpyCH4V TGCA 2 cut(s) 52, 201
HpyF3I CTNAG 3 cut(s) 276, 332, 421
HpySE526I ACGT 3 cut(s) 6, 172, 230
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 442
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 412
LpnPI CCDG 3 cut(s) 75, 87, 470
MaeII ACGT 3 cut(s) 6, 172, 230
MaeIII GTNAC 2 cut(s) 97, 107
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 7 cut(s) 34, 88, 248, 251, 334, 376, 395
MhlI GDGCHC 2 cut(s) 143, 222
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 1 cut(s) 475
MluNI TGGCCA 1 cut(s) 437
MnlI CCTC 6 cut(s) 66, 276, 327, 345, 348, 379
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 35, 443
Msp20I TGGCCA 1 cut(s) 437
NcoI CCATGG 1 cut(s) 438
NdeII GATC 1 cut(s) 412
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 60, 124
RsaNI GTAC 2 cut(s) 59, 123
RseI CAYNNNNRTG 2 cut(s) 35, 443
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 124
SduI GDGCHC 2 cut(s) 143, 222
SfcI CTRYAG 1 cut(s) 459
SmiMI CAYNNNNRTG 2 cut(s) 35, 443
Sse9I AATT 1 cut(s) 475
SsiI CCGC 3 cut(s) 129, 319, 449
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 97, 460
TaiI ACGT 3 cut(s) 9, 175, 233
TaqI TCGA 2 cut(s) 254, 393
TasI AATT 1 cut(s) 475
TatI WGTACW 1 cut(s) 122
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 106, 284
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 131, 301, 377
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 2 cut(s) 106, 284
XapI RAATTY 1 cut(s) 475
ZraI GACGTC 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.