Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

9838812 .. 9839454

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGATAAACGCAAAGACGCTCATGAAGTTGGCTAAGACATGGCAACAAAGAGCAGCCCTCAAGAGGAAAAGAATTTCATTTCAGAGATCAAGTATTACTACTACTAGCAGCCAAACAACTGTAGAAAAGGGTTGTTTCGTGGTTTACACGGCTGATAAGATCCGTTTTTCATTTCCCTTAAGTTACCTAAGCAACACTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTCCCGACGGAAGGACCAATCACATTGCCATTCGATTCGGTCTTTTTAGAGTATCTCATCAAACTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTCTGTTATGGTCAATCTCAAGTGCTAGATGCTCTTTGCAACCACAACAACATTGTAGTGCTACTCAACAGTTGCTTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

9.27

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	7 - 104	4e-28	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	157, 304
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	66, 254
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	157, 304
ApeKI	GCWGC	2 cut(s)	56, 111
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	68, 123
BceAI	ACGGC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	108, 369
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	181
BisI	GCNGC	2 cut(s)	57, 112
BlsI	GCNGC	2 cut(s)	58, 113
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmsI	GCATC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	47, 346
BsaI	GGTCTC	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 254
Bse3DI	GCAATG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	66, 254
BseMI	GCAATG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	68, 123
BsiHKAI	GWGCWC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	66, 254
BsmAI	GTCTC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	89, 162, 309
BspHI	TCATGA	1 cut(s)	24
BspPI	GGATC	2 cut(s)	157, 304
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	266
BssMI	GATC	3 cut(s)	89, 162, 309
Bst4CI	ACNGT	2 cut(s)	124, 414
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	36, 191
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	3 cut(s)	92, 165, 312
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	89, 162, 309
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	68, 123
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	25, 42
CviJI	RGCY	6 cut(s)	35, 59, 114, 155, 214, 344
CviKI_1	RGCY	6 cut(s)	35, 59, 114, 155, 214, 344
DdeI	CTNAG	2 cut(s)	36, 191
DpnI	GATC	3 cut(s)	91, 164, 311
DpnII	GATC	3 cut(s)	89, 162, 309
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	2 cut(s)	28, 45
FaiI	YATR	3 cut(s)	26, 43, 352
FatI	CATG	2 cut(s)	24, 41
Fnu4HI	GCNGC	2 cut(s)	57, 112
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	57, 112
FspBI	CTAG	2 cut(s)	108, 369
GluI	GCNGC	2 cut(s)	57, 112
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	28, 45
HinfI	GANTC	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	87, 229
Hpy188III	TCNNGA	4 cut(s)	25, 64, 217, 247
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	2 cut(s)	124, 414
HpyCH4V	TGCA	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	36, 191
Hsp92II	CATG	2 cut(s)	28, 45
Kzo9I	GATC	3 cut(s)	89, 162, 309
Lsp1109I	GCAGC	2 cut(s)	68, 123
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	108, 369
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	91, 164, 311
MboI	GATC	3 cut(s)	89, 162, 309
MboII	GAAGA	3 cut(s)	242, 245, 341
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	2 cut(s)	60, 71
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	399
MspCI	CTTAAG	1 cut(s)	181
NdeII	GATC	3 cut(s)	89, 162, 309
NlaIII	CATG	2 cut(s)	28, 45
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	58, 113
Psp124BI	GAGCTC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	57, 112
Sau3AI	GATC	3 cut(s)	89, 162, 309
Sau96I	GGNCC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	2 cut(s)	192, 216
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	3 cut(s)	62, 181, 361
SmoI	CTYRAG	3 cut(s)	62, 181, 361
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	108, 369
SstI	GAGCTC	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	124, 414
TaqI	TCGA	1 cut(s)	276
TaqII	GACCGA	2 cut(s)	230, 271
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	56, 111
TspDTI	ATGAA	4 cut(s)	41, 69, 162, 342
TspGWI	ACGGA	2 cut(s)	155, 266
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	2 cut(s)	108, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.