Rh2BG347600

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000790
Physical Location & Seq
Reverse (-)
46773373 .. 46773810
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG347600.1

Sequence Viewer

Length: 438 bp
ATGGACGTATTGCTCAGTCCTAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGCAGGTACCAGTTATTGGGAGGAAAAGAACAACACAGCAAACAGTTGTTCGCAGTAACAAAATTAATAGTACTACTGCAAATAAGGGCACTTTTGTTATCTACACCCTTGACCAAAGGCGTTTTGTACTTCCCTTATCCTTTCTATGCAACTACATTTTTCAAGAGCTTTTCAAGATGTCCGAAGAAGAGTTTGGAATACCAAGTGACGGACCTATTGTACTCCCATGTGATTCACTCCTCGTGAATTACATTCTGTCACTTGTACAACTGGGAACGAGTTTAGAATCGGAGAAAGCTATCCTCAACTCTATCATTAGGCTTAGGAGTAGCTACTTCTTATCTACTGTTGATCGAGAACTACAGACAACACAACAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

145

Amino Acids

16.56

Weight (kDa)

9.61

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 106 3.7e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 49
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 71
AfaI GTAC 5 cut(s) 63, 127, 183, 276, 321
AfiI CCNNNNNNNGG 2 cut(s) 71, 263
AgsI TTSAA 2 cut(s) 218, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 28, 223, 353, 387
AluI AGCT 4 cut(s) 28, 223, 353, 387
AseI ATTAAT 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 377
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 263
Bse1I ACTGG 2 cut(s) 65, 330
BseLI CCNNNNNNNGG 2 cut(s) 71, 263
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 65, 330
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 71, 263
Bsp1286I GDGCHC 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 65, 330
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 100, 403
Bst6I CTCTTC 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 14, 21, 377
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 146
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 5 cut(s) 62, 126, 182, 275, 320
CviAII CATG 1 cut(s) 282
CviJI RGCY 5 cut(s) 28, 223, 353, 376, 387
CviKI_1 RGCY 5 cut(s) 28, 223, 353, 376, 387
CviQI GTAC 5 cut(s) 62, 126, 182, 275, 320
DdeI CTNAG 3 cut(s) 14, 21, 377
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 266
FaeI CATG 1 cut(s) 285
FaiI YATR 3 cut(s) 202, 283, 436
FatI CATG 1 cut(s) 281
Hin1II CATG 1 cut(s) 285
HinfI GANTC 2 cut(s) 287, 341
Hpy188I TCNGA 2 cut(s) 238, 346
Hpy188III TCNNGA 4 cut(s) 218, 229, 298, 410
HpyCH4III ACNGT 2 cut(s) 100, 403
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 52, 134, 204
HpyF3I CTNAG 3 cut(s) 14, 21, 377
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 285
KpnI GGTACC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 3 cut(s) 44, 78, 311
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 3 cut(s) 110, 260, 312
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 251, 254
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 117, 301, 431
MnlI CCTC 3 cut(s) 69, 305, 368
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 260, 312
PfeI GAWTC 2 cut(s) 287, 341
PflMI CCANNNNNTGG 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 5 cut(s) 63, 127, 183, 276, 321
RsaNI GTAC 5 cut(s) 62, 126, 182, 275, 320
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 127
SduI GDGCHC 1 cut(s) 146
SetI ASST 7 cut(s) 9, 30, 63, 225, 271, 355, 389
SfcI CTRYAG 1 cut(s) 416
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 117, 301, 431
TaaI ACNGT 2 cut(s) 100, 403
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 409
TasI AATT 3 cut(s) 117, 301, 431
TatI WGTACW 4 cut(s) 125, 181, 274, 319
TfiI GAWTC 2 cut(s) 287, 341
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 2 cut(s) 260, 312
Tsp45I GTSAC 2 cut(s) 260, 312
TspGWI ACGGA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 266
VspI ATTAAT 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.