Rw2G028790

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000790
Physical Location & Seq
Forward (+)
46272866 .. 46273306
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028790.1

Sequence Viewer

Length: 441 bp
ATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCGCAACAGTCATTGGCAGTAACAAGATGAATTGTACTACCGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATCTCTGCAACCACATTTTCCAAGAGCTCTTTAAGATGTCTGAAGAAGAGTTAGGAATATCGAGAAGCGGTCCTATCGTACTCCCGTGCGATTCACTCCTCATGAATTATATAGTCTCACTTGTTCAGCTTGGAATGAGTTTAGAAGTGGAGAAAGCTATCCTCAATTCTATTATTAGGCTTAGGAGTAGCTACTTCTTGTCTACTTTTGATCGAGAACTACAGACCAACCAACAATTACTCCTTTGTGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

146

Amino Acids

16.58

Weight (kDa)

9.54

Isoelectric Point (pI)

68.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 5 - 102 1.3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 81, 120, 252
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 3 cut(s) 51, 115, 264
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 5 cut(s) 19, 211, 313, 341, 375
AluI AGCT 5 cut(s) 19, 211, 313, 341, 375
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 154, 304
Asp718I GGTACC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 154, 304
BfmI CTRYAG 1 cut(s) 404
BlpI GCTNAGC 1 cut(s) 5
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 154, 304
BsmBI CGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 134, 213
Bsp143I GATC 1 cut(s) 394
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 3 cut(s) 81, 120, 252
BspCNI CTCAG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 49
BssMI GATC 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 62, 225
BstDEI CTNAG 2 cut(s) 5, 365
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 154, 304
BstMBI GATC 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 134
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 50, 114, 263
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 9, 19, 211, 313, 341, 364, 375
CviKI_1 RGCY 7 cut(s) 9, 19, 211, 313, 341, 364, 375
CviQI GTAC 3 cut(s) 50, 114, 263
DdeI CTNAG 2 cut(s) 5, 365
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 62, 225
EarI CTCTTC 2 cut(s) 62, 225
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 170, 287, 294, 296
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 88
FblI GTMKAC 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 275
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 246, 286, 398
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 43, 192
HpyF3I CTNAG 2 cut(s) 5, 365
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 289
KpnI GGTACC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 1 cut(s) 66
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 4 cut(s) 25, 79, 239, 242
MhlI GDGCHC 2 cut(s) 134, 213
MluCI AATT 4 cut(s) 109, 289, 349, 419
MnlI CCTC 3 cut(s) 57, 293, 356
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 26
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 51
PagI TCATGA 1 cut(s) 285
PfeI GAWTC 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 3 cut(s) 51, 115, 264
RsaNI GTAC 3 cut(s) 50, 114, 263
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 134, 213
SetI ASST 8 cut(s) 21, 51, 55, 166, 213, 315, 343, 377
SfcI CTRYAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 4 cut(s) 109, 289, 349, 419
SsiI CCGC 3 cut(s) 81, 120, 252
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 245, 397
TasI AATT 4 cut(s) 109, 289, 349, 419
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 122, 302
VpaK11BI GGWCC 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.