Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Reverse (-)

42278238 .. 42278690

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACATGATGCTCAGCCCAAAAAGGCTCATTAAAATGGCTAGAAAGTGGCAGATGAATGACGTTATGGGGAGCAAAAAAATTTCATACCTGAGAGGAGTTGGTAGAAAGTCATGTGATACTACTGCAGCGAAAGGCAATTTTGTTATTTACACCCTTGACAAGGCGCGTTTTGTGCTTCCCTTATCTTATCTTGGTAGCTACATTTTCCAAGAGCTTTTCAAAATGTCTGAAGAAGAGTTCGGAGTATCAAGCAATGAGCCTATCGTATTACCATGTGATTCACTCCTCATGAATTACATTGTGTCACTTGTCCACCTTGGAATGAGCATAGATTTGGAGAAAGCTATTGTCAAATTTGTGAGTAGGAGTAGTTGCTCTGTATCTAGCTTCAGTCGAGAACAAACAAGCCAACACTTACTCCTTTGTGGTCAATGGCGGATCCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

150

Amino Acids

17.09

Weight (kDa)

9.1

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	8 - 104	1.2e-25	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	436, 449
AcsI	RAATTY	2 cut(s)	81, 356
AcuI	CTGAAG	2 cut(s)	252, 376
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	201, 217, 347, 390
AluI	AGCT	4 cut(s)	201, 217, 347, 390
AlwI	GGATC	2 cut(s)	436, 449
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	81, 356
AspLEI	GCGC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	446
BfaI	CTAG	2 cut(s)	42, 387
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	28, 83
BseRI	GAGGAG	2 cut(s)	111, 278
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	441
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	27, 84
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	443
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	436, 449
BsrDI	GCAATG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	14, 92
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	169
CviAII	CATG	4 cut(s)	7, 114, 276, 292
CviJI	RGCY	9 cut(s)	18, 28, 41, 201, 217, 262, 347, 390, 411
CviKI_1	RGCY	9 cut(s)	18, 28, 41, 201, 217, 262, 347, 390, 411
DdeI	CTNAG	2 cut(s)	14, 92
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	252, 376
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	4 cut(s)	10, 117, 279, 295
FaiI	YATR	7 cut(s)	8, 68, 88, 115, 277, 293, 332
FatI	CATG	4 cut(s)	6, 113, 275, 291
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	42, 387
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	10, 117, 279, 295
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	232, 245
Hpy188III	TCNNGA	2 cut(s)	292, 398
Hpy8I	GTNNAC	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	14, 92
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	10, 117, 279, 295
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	2 cut(s)	104, 431
Lsp1109I	GCAGC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	42, 387
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	2 cut(s)	245, 248
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	4 cut(s)	81, 139, 295, 356
MnlI	CCTC	2 cut(s)	89, 299
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	4 cut(s)	10, 117, 279, 295
NlaIV	GGNNCC	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	446
SetI	ASST	7 cut(s)	66, 93, 203, 219, 321, 349, 392
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	4 cut(s)	81, 139, 295, 356
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	42, 387
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	397
TasI	AATT	4 cut(s)	81, 139, 295, 356
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	71, 75, 308
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	81, 356
XspI	CTAG	2 cut(s)	42, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.