Rroxscaffold_2G00112430

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000790
Physical Location & Seq
Reverse (-)
37609001 .. 37610244
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112430.1

Sequence Viewer

Length: 558 bp
ATGGATATGATGCTCAGCCCCAAGAAACTCATCAAACTGACTAGGAAGATACCAGTCATCAGAAGGAAAAAGAACTCATACCCAAGAGCAGGAGCAAGTACTAGTTTCAAGATGGATAGCCCAAAGTCTACAGATAAAGGTACTTTTGTTATCTACACCCTTGACCAAAGGCGTTTTGTTCTTCCCTTATCCTTTTTATGCAACTACATTTTTCAAGAGCTTTTCAAGATTTCCGAAGAAGAGTTTGGAATACCGAGTGACGGGCCTATTGTTGTTCCATGCGATTCACTTCTCATGAATTACATTGTCTCACTTGTCCAACTTAGAATGAGTTCAGATTTGGAGAAAGCTATACTCAACCCCATCATCAGAAGTAACTGCTCCATATCTACTTTTGATGGTCGAGAACAGAAGAGCCAACAATTACTCCTGCGTACATGTGGGTTACTAATTAACATATCCGTACATTCACTTAATATATATAGAAGACATAAACATAACTGTAAAAATGAGTCCAATATATTGTTGATGGAGCGTCGTAAAACAGGATGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

185

Amino Acids

21.39

Weight (kDa)

9.71

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 1.2e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AfaI GTAC 4 cut(s) 100, 142, 436, 465
AfiI CCNNNNNNNGG 2 cut(s) 89, 260
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 3 cut(s) 109, 215, 226
AhlI ACTAGT 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 2 cut(s) 220, 350
AluI AGCT 2 cut(s) 220, 350
Alw26I GTCTC 1 cut(s) 313
AoxI GGCC 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 132, 165
BbsI GAAGAC 1 cut(s) 493
BccI CCATC 5 cut(s) 106, 371, 392, 523, 543
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 42, 102
BfmI CTRYAG 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 493
Bpu1102I GCTNAGC 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 260
Bse1I ACTGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 2 cut(s) 89, 260
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 53
BshFI GGCC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 89, 260
BsmAI GTCTC 1 cut(s) 313
BsnI GGCC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 407
BsrI ACTGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 2 cut(s) 234, 407
BstDEI CTNAG 2 cut(s) 14, 323
BstF5I GGATG 1 cut(s) 554
BstMAI GTCTC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 554
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 524
Csp6I GTAC 4 cut(s) 99, 141, 435, 464
CviAII CATG 3 cut(s) 279, 295, 438
CviJI RGCY 6 cut(s) 18, 120, 220, 265, 350, 417
CviKI_1 RGCY 6 cut(s) 18, 120, 220, 265, 350, 417
CviQI GTAC 4 cut(s) 99, 141, 435, 464
DdeI CTNAG 2 cut(s) 14, 323
Eam1104I CTCTTC 2 cut(s) 234, 407
EarI CTCTTC 2 cut(s) 234, 407
FaeI CATG 3 cut(s) 282, 298, 441
FatI CATG 3 cut(s) 278, 294, 437
FblI GTMKAC 1 cut(s) 128
FspBI CTAG 2 cut(s) 42, 102
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 1 cut(s) 524
Hin1II CATG 3 cut(s) 282, 298, 441
HinfI GANTC 2 cut(s) 284, 512
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 4 cut(s) 62, 235, 337, 371
Hpy188III TCNNGA 5 cut(s) 109, 215, 226, 295, 404
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 540
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 201
HpyF3I CTNAG 2 cut(s) 14, 323
Hsp92II CATG 3 cut(s) 282, 298, 441
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 92, 386, 532
LpnPI CCDG 4 cut(s) 66, 75, 443, 531
MaeI CTAG 2 cut(s) 42, 102
MaeIII GTNAC 3 cut(s) 257, 374, 444
MboII GAAGA 6 cut(s) 58, 173, 248, 251, 424, 498
MluCI AATT 3 cut(s) 298, 422, 450
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 2 cut(s) 453, 474
NlaIII CATG 3 cut(s) 282, 298, 441
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 441
PagI TCATGA 1 cut(s) 294
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PscI ACATGT 1 cut(s) 437
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 4 cut(s) 100, 142, 436, 465
RsaNI GTAC 4 cut(s) 99, 141, 435, 464
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 453, 474
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 521
SetI ASST 3 cut(s) 142, 222, 352
SfcI CTRYAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 3 cut(s) 298, 422, 450
SspMI CTAG 2 cut(s) 42, 102
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 1 cut(s) 403
TasI AATT 3 cut(s) 298, 422, 450
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 453, 474
Tru9I TTAA 2 cut(s) 453, 474
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 2 cut(s) 42, 102
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.