Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000790

Physical Location & Seq

Genomic Coordinates Forward (+)

10322423 .. 10323239

Gene Structure 817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGCCCTCCACAGGAAAAGAATCTCATTTCAGAGATCAAATGTCTTTACTAGCAGCTCTTCTACTGTAGAAAAGGGTTGTTTCGTGGTCTACACGGCGGATAAAATCCGCTTTGCTTTTCCAATAAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTCCCAACGGAAGGACCAATCACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCTCATCAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTGATGTCAATCTCTAGTGCTAAGTGTTCTTTACAATGTTCTTTGCTACAGCAAGAACAGAGTACTCAACAATTGCTTGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006810 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0010817 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046620 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

9.38

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	6 - 103	8.2e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29420 AT1G29420 AT1G29430 AT1G29440 AT1G29450 AT1G29450 AT1G29460 AT1G29460 AT1G29490 AT1G29500 AT1G29510 AT5G27780
fragaria_vesca	FvH4_6g27350
malus_domestica	MD07G1151400.v1.1 MD12G1088000.v1.1 MD12G1088100.v1.1 MD12G1088200.v1.1
prunus_persica	Prupe.7G048400_v2.0.a1 Prupe.7G048500_v2.0.a1 Prupe.7G048600_v2.0.a1
pyrus_communis	pycom12g07490 pycom12g07500
rosa_chinensis	RchiOBHm_Chr2g0129571 RchiOBHm_Chr2g0129581 RchiOBHm_Chr2g0131961 RchiOBHm_Chr2g0131971 RchiOBHm_Chr2g0131981
rosa_laevigata	RLG00000019088 RLG00000019089 RLG00000019220 RLG00000019221
rosa_multiflora	Rmu_sc0000584.1_g000015 Rmu_sc0000584.1_g000016 Rmu_sc0000584.1_g000020 Rmu_sc0000999.1_g000048
rosa_roxburghii	Rroxscaffold_2G00112430 Rroxscaffold_2G00112440 Rroxscaffold_2G00114520
rosa_rugosa	Rorug02G0287200 Rorug02G0287300 Rorug02G0287400 Rorug02G0301300 Rorug02G0301400 Rorug02G0301500 Rorug02G0301600
rosa_samantha	Rh2AG338800 Rh2AG338900 Rh2AG339000 Rh2AG353000 Rh2BG347600 Rh2BG347700 Rh2BG360400 Rh2BG360500 Rh2BG360600 Rh2CG326200 Rh2CG326300 Rh2CG326400 Rh2CG338300 Rh2DG366000 Rh2DG366100 Rh2DG377300 Rh2DG377400 Rh7DG159500 Rh7DG377700
rosa_wichuraiana	Rw2G028020 Rw2G028030 Rw2G028760 Rw2G028770 Rw2G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	152, 163
AclWI	GGATC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	66, 251
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	3 cut(s)	22, 111, 211
AluI	AGCT	3 cut(s)	22, 111, 211
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	56, 108
AspS9I	GGNCC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	68, 120
BccI	CCATC	2 cut(s)	25, 317
BceAI	ACGGC	2 cut(s)	165, 253
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	105, 360
BfmI	CTRYAG	2 cut(s)	120, 392
BisI	GCNGC	2 cut(s)	57, 109
BlsI	GCNGC	2 cut(s)	58, 110
BmcAI	AGTACT	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BsaBI	GATNNNNATC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 251
Bse3DI	GCAATG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	353
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	66, 251
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	68, 120
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	66, 251
BsmAI	GTCTC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	89, 306
BspACI	CCGC	2 cut(s)	152, 163
BspCNI	CTCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	263
BssMI	GATC	2 cut(s)	89, 306
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	118, 225
BstDEI	CTNAG	3 cut(s)	36, 188, 366
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	92, 309
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	89, 306
BstSFI	CTRYAG	2 cut(s)	120, 392
BstV1I	GCAGC	2 cut(s)	68, 120
BtsCI	GGATG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	408
CviJI	RGCY	6 cut(s)	22, 35, 59, 111, 211, 341
CviKI_1	RGCY	6 cut(s)	22, 35, 59, 111, 211, 341
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	36, 188, 366
DpnI	GATC	2 cut(s)	91, 308
DpnII	GATC	2 cut(s)	89, 306
Eam1104I	CTCTTC	2 cut(s)	118, 225
EarI	CTCTTC	2 cut(s)	118, 225
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	213
FaiI	YATR	2 cut(s)	26, 430
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	57, 109
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	57, 109
FspBI	CTAG	2 cut(s)	105, 360
GluI	GCNGC	2 cut(s)	57, 109
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	75, 275
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	87, 189, 226
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	36, 188, 366
Kzo9I	GATC	2 cut(s)	89, 306
LguI	GCTCTTC	1 cut(s)	118
LpnPI	CCDG	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	68, 120
MaeI	CTAG	2 cut(s)	105, 360
MalI	GATC	2 cut(s)	91, 308
MboI	GATC	2 cut(s)	89, 306
MboII	GAAGA	4 cut(s)	40, 105, 239, 242
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	416
MnlI	CCTC	1 cut(s)	71
MunI	CAATTG	1 cut(s)	416
NdeII	GATC	2 cut(s)	89, 306
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	75, 275
PkrI	GCNGC	2 cut(s)	58, 110
Psp124BI	GAGCTC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	57, 109
Sau3AI	GATC	2 cut(s)	89, 306
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	3 cut(s)	24, 113, 213
SfcI	CTRYAG	2 cut(s)	120, 392
SgeI	CNNG	9 cut(s)	79, 117, 151, 160, 218, 226, 298, 372, 410
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	152, 163
SspMI	CTAG	2 cut(s)	105, 360
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	416
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	75, 275
TseI	GCWGC	2 cut(s)	56, 108
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	105, 360
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.