Rorug02G0301500

Auxin responsive protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
33658069 .. 33658314
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0301500.1

Sequence Viewer

Length: 246 bp
ATGTCTGCGCTGGTGGAGATGTGGAGTAATGAGACCAAGGAGCAGAGCCAGAAGGATCAAACCCTTTCGTCGAATGCCTCGGCCTCATCAAGCACTAATGTTGGGGTTAACCAAGCGAAAGGAAGGATGAACTCGTCAACCTTGTTAGCTCCTGTTTTCGACAGAGTCGTGCGTGTCAACTCACTTTTGACACACTATTCGTCTGAAGCCTCAGTTTCCATGCTTCTAGAGTGGTTTAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.86

Weight (kDa)

6.54

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 225
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 36, 78
BseDI CCNNGG 2 cut(s) 36, 78
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 224
BspPI GGATC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 36, 78
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 132
CfoI GCGC 1 cut(s) 10
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 48, 83, 149, 209, 243
CviKI_1 RGCY 5 cut(s) 48, 83, 149, 209, 243
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 223
FaiI YATR 1 cut(s) 221
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 139
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 3 cut(s) 109, 138, 178
HindII GTYRAC 3 cut(s) 109, 138, 178
HinfI GANTC 1 cut(s) 165
HpaI GTTAAC 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 109, 138, 178
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 3 cut(s) 109, 138, 178
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 46, 117
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 40, 154
LpnPI CCDG 2 cut(s) 62, 165
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 3 cut(s) 88, 94, 220
MseI TTAA 2 cut(s) 108, 237
Mva1269I GAATGC 1 cut(s) 79
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 164
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 108, 237
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 174
SetI ASST 2 cut(s) 143, 151
SspMI CTAG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 2 cut(s) 71, 159
Tru1I TTAA 2 cut(s) 108, 237
Tru9I TTAA 2 cut(s) 108, 237
TspDTI ATGAA 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 226
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.