Rh2AG353000

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000790
Physical Location & Seq
Forward (+)
52219606 .. 52219986
381 bp
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UTR
Exon/CDS
Intron
Rh2AG353000.1

Sequence Viewer

Length: 381 bp
ATGGATATGATGCTCAGCCCCAAGAAACTCATCAAACTGACTAGGAAGATACCAGTCATCAGAAGGAAAAAGAACTCATACCCAAGAGCACGTGTAAGTACTAGTTTCAAGATGGATAGCCCTAAGTCTACAGATAAAGGTACTTTTGTTATCTACACCCTTGACCAAAGGCGTTTTGTTCTTCCCTTATCCTTTCTATGCAACTACATTTTTCAAGAGCTTTTCAAGATTTCCGAAGAAGAGTTTGGAATACCGAGTGACGGGCCTATTGTTGTTCCATGCGATTCACTTCTCATGAATTACATTGTCTCACTTGTCCAACTTGGAATGAGTTCAGATTTGGAGAAAGCTATACTCAACTCCATGCATCATCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

126

Amino Acids

14.53

Weight (kDa)

9.58

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 105 3.8e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AcvI CACGTG 1 cut(s) 92
AfaI GTAC 2 cut(s) 100, 142
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 109, 215, 226
AhlI ACTAGT 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 2 cut(s) 220, 350
AluI AGCT 2 cut(s) 220, 350
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 313
AoxI GGCC 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 132, 165
BbrPI CACGTG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 42, 102
BfmI CTRYAG 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 376
Bpu1102I GCTNAGC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 53
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 313
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 14, 123
BstMAI GTCTC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 265
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 99, 141
CviAII CATG 3 cut(s) 279, 295, 364
CviJI RGCY 5 cut(s) 18, 120, 220, 265, 350
CviKI_1 RGCY 5 cut(s) 18, 120, 220, 265, 350
CviQI GTAC 2 cut(s) 99, 141
DdeI CTNAG 2 cut(s) 14, 123
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 369
FaeI CATG 3 cut(s) 282, 298, 367
FaiI YATR 7 cut(s) 8, 79, 199, 280, 296, 353, 365
FatI CATG 3 cut(s) 278, 294, 363
FblI GTMKAC 1 cut(s) 128
FspBI CTAG 2 cut(s) 42, 102
HaeIII GGCC 1 cut(s) 265
Hin1II CATG 3 cut(s) 282, 298, 367
HinfI GANTC 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 4 cut(s) 62, 235, 337, 375
Hpy188III TCNNGA 4 cut(s) 109, 215, 226, 295
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 201, 367
HpyF3I CTNAG 2 cut(s) 14, 123
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 282, 298, 367
LpnPI CCDG 1 cut(s) 66
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 42, 102
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 4 cut(s) 58, 173, 248, 251
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 343
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 331
NlaIII CATG 3 cut(s) 282, 298, 367
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 369
PagI TCATGA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 284
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 92
PspCI CACGTG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 100, 142
RsaNI GTAC 2 cut(s) 99, 141
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 100
SduI GDGCHC 1 cut(s) 91
SetI ASST 4 cut(s) 94, 142, 222, 352
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 42, 102
TaiI ACGT 1 cut(s) 94
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 1 cut(s) 284
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 2 cut(s) 42, 102
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.