Prupe.7G048500_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000790
Physical Location & Seq
Reverse (-)
8552726 .. 8553184
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G048500.1

Sequence Viewer

Length: 459 bp
ATGGAAAAAATAATCAGCCCCAAGAGACTCATTAAAATTGCTAGCAAGTGGCAAAAGAGAGATGCTGTGGGGAGGAACAAAAATTCATCGCCAAGAGTAGCAAACAACAACATGATGAATAACATGGTGAGTGAAAAGGGAACTTTTGTTATCTACACCATTGACGAAAGCCGTTTTGTACTGCCGTTATCCTATCTTTCCAACTGCATTTTCCAAGAGCTCTTCAAGATGTCTGAAGAAGAGTTTGGACTTTCAACTAGTTCTGGGCCTATCGTCTTGCCGTGTGACTCGTTCTTCATGAATTACGTAGTCTCACGTCTCCAACAAGGAATGACTACAGATTTGGAGAGAGCTTTGCAGGCCAAATCTCTCATTAGTTGTAGCTGCTCAAGTTTTACATTACATCAAGGACAAACAAGCAACCCAACTATTCCTTTGTGGTTACTGCTGAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

8.98

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 2 cut(s) 226, 255
AhlI ACTAGT 1 cut(s) 257
AjiI CACGTC 1 cut(s) 317
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 228, 260
AluBI AGCT 4 cut(s) 220, 353, 384, 456
AluI AGCT 4 cut(s) 220, 353, 384, 456
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 19, 316, 323
AoxI GGCC 2 cut(s) 266, 360
ApeKI GCWGC 2 cut(s) 384, 453
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 139
AsuNHI GCTAGC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 371
BceAI ACGGC 3 cut(s) 156, 169, 265
BcoDI GTCTC 3 cut(s) 19, 316, 323
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 2 cut(s) 42, 258
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 385, 454
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 2 cut(s) 386, 455
BmgBI CACGTC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 266
BmsI GCATC 1 cut(s) 52
BmtI GCTAGC 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 307
BseMII CTCAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 371
BshFI GGCC 2 cut(s) 268, 362
BsiHKAI GWGCWC 1 cut(s) 222
BsmAI GTCTC 3 cut(s) 19, 316, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 2 cut(s) 268, 362
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1720I GCTNAGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 268, 362
BspCNI CTCAG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 297
BspOI GCTAGC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 227, 234
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 43, 360
BstDEI CTNAG 1 cut(s) 449
BstMAI GTCTC 3 cut(s) 19, 316, 323
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 336
BstSNI TACGTA 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 268, 362
BtgZI GCGATG 1 cut(s) 72
BtrI CACGTC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 43, 360
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 112, 124, 298
CviJI RGCY 8 cut(s) 18, 171, 220, 268, 353, 362, 384, 456
CviKI_1 RGCY 8 cut(s) 18, 171, 220, 268, 353, 362, 384, 456
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 227, 234
EarI CTCTTC 2 cut(s) 227, 234
Ecl136II GAGCTC 1 cut(s) 220
Eco105I TACGTA 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 3 cut(s) 115, 127, 301
FaiI YATR 3 cut(s) 113, 125, 299
FatI CATG 3 cut(s) 111, 123, 297
Fnu4HI GCNGC 2 cut(s) 385, 454
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 385, 454
FspBI CTAG 2 cut(s) 42, 258
GluI GCNGC 2 cut(s) 385, 454
HaeIII GGCC 2 cut(s) 268, 362
Hin1II CATG 3 cut(s) 115, 127, 301
HinfI GANTC 2 cut(s) 27, 287
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 226, 298
HpyCH4IV ACGT 2 cut(s) 306, 316
HpyCH4V TGCA 2 cut(s) 207, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 2 cut(s) 306, 316
Hsp92II CATG 3 cut(s) 115, 127, 301
LguI GCTCTTC 1 cut(s) 227
LpnPI CCDG 2 cut(s) 249, 344
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 42, 258
MaeII ACGT 2 cut(s) 306, 316
MaeIII GTNAC 2 cut(s) 284, 441
MboII GAAGA 4 cut(s) 214, 248, 251, 286
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 3 cut(s) 36, 82, 301
MlyI GAGTC 2 cut(s) 21, 281
MmeI TCCRAC 2 cut(s) 225, 346
MnlI CCTC 1 cut(s) 66
MseI TTAA 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 359
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 115, 127, 301
NmuCI GTSAC 1 cut(s) 284
PagI TCATGA 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 386, 455
PleI GAGTC 2 cut(s) 21, 281
PpsI GAGTC 2 cut(s) 21, 281
Ppu21I YACGTR 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 385, 454
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 21, 281
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 222, 309, 319, 355, 386, 458
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SnaBI TACGTA 1 cut(s) 307
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 3 cut(s) 36, 82, 301
SspMI CTAG 2 cut(s) 42, 258
SstI GAGCTC 1 cut(s) 222
TaiI ACGT 2 cut(s) 309, 319
TasI AATT 3 cut(s) 36, 82, 301
TatI WGTACW 1 cut(s) 178
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 2 cut(s) 384, 453
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 75, 131, 286, 314
XapI RAATTY 1 cut(s) 82
XspI CTAG 2 cut(s) 42, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.