pycom12g07500

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000790
Physical Location & Seq
Forward (+)
7889634 .. 7890086
453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07500.1

Sequence Viewer

Length: 453 bp
ATGGACTCCAAGATGCTCAGCCCTAAGAAGCTCCTTAAATATGCTATGAAGTGGGAGAGAAGAGCTTTTATGGAGCGGACAGCCATCGCATACCCGAGAGGTGGTGGGAGAAATATAGTCAGAAGTAATATGGTGAGTGAAAAAGGAACTTTTGTGGTATATACCATTGATGAGAGACGTTTTGTGTTGCCGTTATCCTATCTCTCCAACCACATTTTTCAAAAGCTTTTCAAGATGTCTGAGGAAGAGTTTGGACTCTCAAGTACTGAGCCTATCACATTGCCATGTGATTCATTCTTCATGAATTACACGATCTCATTTGTCAAGCGACGTTGTCTAACTATAGATACGGAGAAAGCCTTACTCAATTCTATAGCCAGCAATAGCTGCTCAATGAATTCTAGTTTACATCAAGGACAAACAAGCCTACAATCACTACTTTATGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

151

Amino Acids

17.22

Weight (kDa)

9.48

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 107 1.6e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 221, 232
AluBI AGCT 4 cut(s) 31, 65, 226, 387
AluI AGCT 4 cut(s) 31, 65, 226, 387
Alw26I GTCTC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 94
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 2 cut(s) 342, 372
BisI GCNGC 1 cut(s) 388
BlpI GCTNAGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 389
BmcAI AGTACT 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 94
BmsI GCATC 1 cut(s) 3
Bpu1102I GCTNAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 31, 231, 258
BseXI GCAGC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 17
BspACI CCGC 1 cut(s) 76
BspCNI CTCAG 3 cut(s) 30, 232, 259
BspHI TCATGA 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 278
BssMI GATC 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 55, 240
BstAPI GCANNNNNTGC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 4 cut(s) 17, 24, 240, 267
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstSFI CTRYAG 2 cut(s) 342, 372
BstV1I GCAGC 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 379
CciI TCATGA 1 cut(s) 300
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 285, 301
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 17, 24, 240, 267
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 55, 240
EarI CTCTTC 2 cut(s) 55, 240
Eco88I CYCGRG 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 288, 304
FatI CATG 2 cut(s) 284, 300
Fnu4HI GCNGC 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 388
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 288, 304
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 5, 255, 290
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 122, 241
Hpy188III TCNNGA 2 cut(s) 232, 301
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 178, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 4 cut(s) 17, 24, 240, 267
HpySE526I ACGT 2 cut(s) 178, 331
Hsp92II CATG 2 cut(s) 288, 304
Kzo9I GATC 1 cut(s) 312
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 36, 73
LpnPI CCDG 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 402
MaeII ACGT 2 cut(s) 178, 331
MaeIII GTNAC 1 cut(s) 446
MalI GATC 1 cut(s) 314
MbiI CCGCTC 1 cut(s) 76
MboI GATC 1 cut(s) 312
MboII GAAGA 3 cut(s) 72, 257, 289
MluCI AATT 3 cut(s) 304, 367, 397
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 2 cut(s) 92, 235
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 288, 304
PagI TCATGA 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 389
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PsyI GACNNNGTC 1 cut(s) 333
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 388
Sau3AI GATC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 249
SetI ASST 7 cut(s) 33, 67, 103, 181, 228, 334, 389
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 2 cut(s) 342, 372
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 3 cut(s) 304, 367, 397
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 402
TaiI ACGT 2 cut(s) 181, 334
TasI AATT 3 cut(s) 304, 367, 397
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 387
TspDTI ATGAA 5 cut(s) 62, 282, 289, 317, 410
TspGWI ACGGA 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 333
XapI RAATTY 1 cut(s) 397
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.