Rh2AG339000

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000790
Physical Location & Seq
Reverse (-)
49211245 .. 49211691
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG339000.1

Sequence Viewer

Length: 447 bp
ATGGACATTCTACTTAGTCCAAAGAAGCTCATCAAACTGACCAGGAACTTGCAGAAGCTACCAGTTATTGGGAGAAGGAAAACTTCATACCAAAGAGCAGCTGTCGACGGTAACAGGATGAGTACTAGTACTGCAGATAAAGGCACCTTCGTTATCTACACCCTTGACAAGAGGCGCTTTGTGCTTCCCTTGTCCTATCTTTCTAACTACATTTTCCAAGAGCTATTCAAGATGTCTGAAGAAGAATTTGGAATATCGAGTAGTGATCCTATTGTTATCCCATGCGATTCACGCCTCATGGACTACATAGTCTCACTAGTGAAGCTTGGAATGAGTGTAGAGTTGGAGAAAGCTTTACTCAACTCTATCATTAGAAGTAGTTGCTCCATAGCTACTTTTGATCCTCGAGGACAGACAAGCCAACAATTACTCGTCTGTGGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

16.72

Weight (kDa)

9.35

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 8 - 106 1.6e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AbsI CCTCGAGG 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 1 cut(s) 105
AclWI GGATC 2 cut(s) 260, 395
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 124, 130
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 229
AhlI ACTAGT 2 cut(s) 125, 316
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 7 cut(s) 28, 58, 101, 223, 325, 353, 392
AluI AGCT 7 cut(s) 28, 58, 101, 223, 325, 353, 392
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 2 cut(s) 260, 395
Ama87I CYCGRG 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 405
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 316
BcuI ACTAGT 2 cut(s) 125, 316
BfaI CTAG 2 cut(s) 126, 317
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 2 cut(s) 124, 130
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 405
Bsp143I GATC 2 cut(s) 265, 400
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 2 cut(s) 260, 395
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 62
BssMI GATC 2 cut(s) 265, 400
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 268, 403
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 265, 400
BstMWI GCNNNNNNNGC 2 cut(s) 181, 291
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 123
CfoI GCGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 123, 129
CviAII CATG 2 cut(s) 282, 298
CviJI RGCY 8 cut(s) 28, 58, 101, 223, 325, 353, 392, 420
CviKI_1 RGCY 8 cut(s) 28, 58, 101, 223, 325, 353, 392, 420
CviQI GTAC 2 cut(s) 123, 129
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 267, 402
DpnII GATC 2 cut(s) 265, 400
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 2 cut(s) 285, 301
FaiI YATR 5 cut(s) 88, 283, 299, 308, 389
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 161, 193
FatI CATG 2 cut(s) 281, 297
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 126, 317
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 178
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 285, 301
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 323, 351
HinfI GANTC 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 69, 157
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 52, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 291
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 2 cut(s) 285, 301
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 265, 400
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 4 cut(s) 28, 55, 75, 100
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 2 cut(s) 126, 317
MaeIII GTNAC 2 cut(s) 110, 440
MalI GATC 2 cut(s) 267, 402
MboI GATC 2 cut(s) 265, 400
MboII GAAGA 2 cut(s) 251, 254
MluCI AATT 2 cut(s) 245, 425
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 4 cut(s) 165, 305, 401, 414
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 181, 291
NdeII GATC 2 cut(s) 265, 400
NlaIII CATG 2 cut(s) 285, 301
NlaIV GGNNCC 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 405
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 405
PstI CTGCAG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 124, 130
RsaNI GTAC 2 cut(s) 123, 129
SalI GTCGAC 1 cut(s) 104
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 265, 400
ScaI AGTACT 2 cut(s) 124, 130
ScrFI CCNGG 1 cut(s) 43
SetI ASST 8 cut(s) 30, 60, 103, 149, 225, 327, 355, 394
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SpeI ACTAGT 2 cut(s) 125, 316
Sse9I AATT 2 cut(s) 245, 425
SspMI CTAG 2 cut(s) 126, 317
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 3 cut(s) 105, 257, 406
TasI AATT 2 cut(s) 245, 425
TatI WGTACW 2 cut(s) 122, 128
TfiI GAWTC 1 cut(s) 287
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 245
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 2 cut(s) 126, 317
ZrmI AGTACT 2 cut(s) 124, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.